HEADER RNA BINDING PROTEIN 04-NOV-15 5EL3 TITLE STRUCTURE OF THE KH DOMAIN OF T-STAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION- COMPND 3 ASSOCIATED PROTEIN 3; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: RNA BINDING PROTEIN, RESIDUES 50-160; COMPND 6 SYNONYM: RNA-BINDING PROTEIN T-STAR,SAM68-LIKE MAMMALIAN PROTEIN 2, COMPND 7 SLM-2,SAM68-LIKE PHOSPHOTYROSINE PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: N-TERMINUS GA FROM TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KHDRBS3, SALP, SLM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLEICS 03 KEYWDS PROTEIN - RNA COMPLEXES STAR PROTEINS KH - DOMAIN ALTERNATIVE KEYWDS 2 SPLICING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DOMINGUEZ,M.FERACCI REVDAT 4 13-SEP-17 5EL3 1 REMARK REVDAT 3 27-JAN-16 5EL3 1 JRNL REVDAT 2 20-JAN-16 5EL3 1 REVDAT 1 13-JAN-16 5EL3 0 JRNL AUTH M.FERACCI,J.N.FOOT,S.N.GRELLSCHEID,M.DANILENKO,R.STEHLE, JRNL AUTH 2 O.GONCHAR,H.S.KANG,C.DALGLIESH,N.H.MEYER,Y.LIU,A.LAHAT, JRNL AUTH 3 M.SATTLER,I.C.EPERON,D.J.ELLIOTT,C.DOMINGUEZ JRNL TITL STRUCTURAL BASIS OF RNA RECOGNITION AND DIMERIZATION BY THE JRNL TITL 2 STAR PROTEINS T-STAR AND SAM68. JRNL REF NAT COMMUN V. 7 10355 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 26758068 JRNL DOI 10.1038/NCOMMS10355 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3426 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 239 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 632 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3693 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3751 ; 0.015 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4941 ; 1.881 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8677 ; 2.512 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.701 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;37.825 ;24.601 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 695 ;13.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4075 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 801 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1810 ; 4.806 ; 1.184 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1808 ; 4.807 ; 1.184 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2259 ; 5.173 ; 1.760 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 53 159 B 53 159 12154 0.180 0.050 REMARK 3 2 A 53 159 C 53 159 12032 0.180 0.050 REMARK 3 3 A 53 159 D 53 159 12200 0.180 0.050 REMARK 3 4 B 48 160 C 48 160 12610 0.160 0.050 REMARK 3 5 B 48 160 D 48 160 12700 0.160 0.050 REMARK 3 6 C 48 160 D 48 160 12878 0.150 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1040 43.7860 9.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.1167 REMARK 3 T33: 0.0031 T12: -0.0152 REMARK 3 T13: 0.0130 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.1679 L22: 0.6315 REMARK 3 L33: 0.4838 L12: 0.0540 REMARK 3 L13: 0.0647 L23: 0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0655 S13: -0.0278 REMARK 3 S21: -0.0038 S22: 0.0183 S23: 0.0038 REMARK 3 S31: 0.0420 S32: -0.0178 S33: -0.0133 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4450 65.6960 10.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1261 REMARK 3 T33: 0.0484 T12: -0.0241 REMARK 3 T13: 0.0291 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.6241 L22: 0.7657 REMARK 3 L33: 1.0745 L12: 0.2915 REMARK 3 L13: -0.1678 L23: -0.3674 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: -0.0402 S13: 0.1177 REMARK 3 S21: 0.0290 S22: -0.0560 S23: 0.0146 REMARK 3 S31: -0.0606 S32: 0.0967 S33: 0.0031 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 160 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6810 50.2500 30.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.2182 REMARK 3 T33: 0.0161 T12: -0.0293 REMARK 3 T13: 0.0324 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.3262 L22: 0.6861 REMARK 3 L33: 1.3841 L12: 0.1503 REMARK 3 L13: -0.1497 L23: -0.3896 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.1354 S13: 0.0097 REMARK 3 S21: 0.1919 S22: -0.0183 S23: 0.0959 REMARK 3 S31: -0.1311 S32: 0.0134 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 48 D 160 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1620 34.8690 3.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.1442 REMARK 3 T33: 0.0374 T12: -0.0025 REMARK 3 T13: 0.0010 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.0800 L22: 0.7310 REMARK 3 L33: 0.5058 L12: 0.0503 REMARK 3 L13: -0.3090 L23: 0.1623 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.1434 S13: -0.0535 REMARK 3 S21: -0.1038 S22: -0.0064 S23: 0.0906 REMARK 3 S31: 0.0471 S32: -0.0076 S33: -0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5EL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 52.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.67700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL 1.8.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, HEPES, PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.96000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 ILE A 50 REMARK 465 ASN A 51 REMARK 465 LYS A 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 104 O HOH C 201 2.00 REMARK 500 O HOH C 262 O HOH C 267 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 90 OH TYR D 120 2555 2.12 REMARK 500 O HOH A 431 O HOH B 286 2545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 103 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 LYS A 153 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP B 105 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 MSE C 103 CA - CB - CG ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG C 143 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 MSE D 103 CA - CB - CG ANGL. DEV. = -11.4 DEGREES REMARK 500 MSE D 103 CG - SE - CE ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 105 77.20 -163.06 REMARK 500 ASP B 158 -159.68 -140.65 REMARK 500 LYS D 69 111.31 -20.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 484 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 485 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH D 348 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH D 349 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 DBREF 5EL3 A 50 160 UNP O75525 KHDR3_HUMAN 50 160 DBREF 5EL3 B 50 160 UNP O75525 KHDR3_HUMAN 50 160 DBREF 5EL3 C 50 160 UNP O75525 KHDR3_HUMAN 50 160 DBREF 5EL3 D 50 160 UNP O75525 KHDR3_HUMAN 50 160 SEQADV 5EL3 GLY A 48 UNP O75525 EXPRESSION TAG SEQADV 5EL3 ALA A 49 UNP O75525 EXPRESSION TAG SEQADV 5EL3 GLY B 48 UNP O75525 EXPRESSION TAG SEQADV 5EL3 ALA B 49 UNP O75525 EXPRESSION TAG SEQADV 5EL3 GLY C 48 UNP O75525 EXPRESSION TAG SEQADV 5EL3 ALA C 49 UNP O75525 EXPRESSION TAG SEQADV 5EL3 GLY D 48 UNP O75525 EXPRESSION TAG SEQADV 5EL3 ALA D 49 UNP O75525 EXPRESSION TAG SEQRES 1 A 113 GLY ALA ILE ASN LYS ASN MSE LYS LEU GLY GLN LYS VAL SEQRES 2 A 113 LEU ILE PRO VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL SEQRES 3 A 113 GLY LYS LEU LEU GLY PRO ARG GLY ASN SER LEU LYS ARG SEQRES 4 A 113 LEU GLN GLU GLU THR LEU THR LYS MSE SER ILE LEU GLY SEQRES 5 A 113 LYS GLY SER MSE ARG ASP LYS ALA LYS GLU GLU GLU LEU SEQRES 6 A 113 ARG LYS SER GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP SEQRES 7 A 113 ASP LEU HIS VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA SEQRES 8 A 113 GLU ALA TYR ALA ARG MSE GLY HIS ALA LEU GLU GLU ILE SEQRES 9 A 113 LYS LYS PHE LEU ILE PRO ASP TYR ASN SEQRES 1 B 113 GLY ALA ILE ASN LYS ASN MSE LYS LEU GLY GLN LYS VAL SEQRES 2 B 113 LEU ILE PRO VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL SEQRES 3 B 113 GLY LYS LEU LEU GLY PRO ARG GLY ASN SER LEU LYS ARG SEQRES 4 B 113 LEU GLN GLU GLU THR LEU THR LYS MSE SER ILE LEU GLY SEQRES 5 B 113 LYS GLY SER MSE ARG ASP LYS ALA LYS GLU GLU GLU LEU SEQRES 6 B 113 ARG LYS SER GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP SEQRES 7 B 113 ASP LEU HIS VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA SEQRES 8 B 113 GLU ALA TYR ALA ARG MSE GLY HIS ALA LEU GLU GLU ILE SEQRES 9 B 113 LYS LYS PHE LEU ILE PRO ASP TYR ASN SEQRES 1 C 113 GLY ALA ILE ASN LYS ASN MSE LYS LEU GLY GLN LYS VAL SEQRES 2 C 113 LEU ILE PRO VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL SEQRES 3 C 113 GLY LYS LEU LEU GLY PRO ARG GLY ASN SER LEU LYS ARG SEQRES 4 C 113 LEU GLN GLU GLU THR LEU THR LYS MSE SER ILE LEU GLY SEQRES 5 C 113 LYS GLY SER MSE ARG ASP LYS ALA LYS GLU GLU GLU LEU SEQRES 6 C 113 ARG LYS SER GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP SEQRES 7 C 113 ASP LEU HIS VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA SEQRES 8 C 113 GLU ALA TYR ALA ARG MSE GLY HIS ALA LEU GLU GLU ILE SEQRES 9 C 113 LYS LYS PHE LEU ILE PRO ASP TYR ASN SEQRES 1 D 113 GLY ALA ILE ASN LYS ASN MSE LYS LEU GLY GLN LYS VAL SEQRES 2 D 113 LEU ILE PRO VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL SEQRES 3 D 113 GLY LYS LEU LEU GLY PRO ARG GLY ASN SER LEU LYS ARG SEQRES 4 D 113 LEU GLN GLU GLU THR LEU THR LYS MSE SER ILE LEU GLY SEQRES 5 D 113 LYS GLY SER MSE ARG ASP LYS ALA LYS GLU GLU GLU LEU SEQRES 6 D 113 ARG LYS SER GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP SEQRES 7 D 113 ASP LEU HIS VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA SEQRES 8 D 113 GLU ALA TYR ALA ARG MSE GLY HIS ALA LEU GLU GLU ILE SEQRES 9 D 113 LYS LYS PHE LEU ILE PRO ASP TYR ASN MODRES 5EL3 MSE A 54 MET MODIFIED RESIDUE MODRES 5EL3 MSE A 95 MET MODIFIED RESIDUE MODRES 5EL3 MSE A 103 MET MODIFIED RESIDUE MODRES 5EL3 MSE A 144 MET MODIFIED RESIDUE MODRES 5EL3 MSE B 54 MET MODIFIED RESIDUE MODRES 5EL3 MSE B 95 MET MODIFIED RESIDUE MODRES 5EL3 MSE B 103 MET MODIFIED RESIDUE MODRES 5EL3 MSE B 144 MET MODIFIED RESIDUE MODRES 5EL3 MSE C 54 MET MODIFIED RESIDUE MODRES 5EL3 MSE C 95 MET MODIFIED RESIDUE MODRES 5EL3 MSE C 103 MET MODIFIED RESIDUE MODRES 5EL3 MSE C 144 MET MODIFIED RESIDUE MODRES 5EL3 MSE D 54 MET MODIFIED RESIDUE MODRES 5EL3 MSE D 95 MET MODIFIED RESIDUE MODRES 5EL3 MSE D 103 MET MODIFIED RESIDUE MODRES 5EL3 MSE D 144 MET MODIFIED RESIDUE HET MSE A 54 8 HET MSE A 95 8 HET MSE A 103 8 HET MSE A 144 8 HET MSE B 54 8 HET MSE B 95 8 HET MSE B 103 8 HET MSE B 144 8 HET MSE C 54 8 HET MSE C 95 8 HET MSE C 103 8 HET MSE C 144 8 HET MSE D 54 8 HET MSE D 95 8 HET MSE D 103 8 HET MSE D 144 8 HET SO4 A 201 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *632(H2 O) HELIX 1 AA1 ASN A 71 GLY A 78 1 8 HELIX 2 AA2 ASN A 82 LEU A 92 1 11 HELIX 3 AA3 ASP A 105 GLY A 116 1 12 HELIX 4 AA4 GLU A 117 ASP A 125 5 9 HELIX 5 AA5 PRO A 136 LYS A 152 1 17 HELIX 6 AA6 LYS A 153 LEU A 155 5 3 HELIX 7 AA7 ASN B 71 GLY B 78 1 8 HELIX 8 AA8 ASN B 82 LEU B 92 1 11 HELIX 9 AA9 ASP B 105 GLY B 116 1 12 HELIX 10 AB1 GLU B 117 ASP B 125 5 9 HELIX 11 AB2 PRO B 136 LYS B 152 1 17 HELIX 12 AB3 LYS B 153 ILE B 156 5 4 HELIX 13 AB4 ASN C 71 GLY C 78 1 8 HELIX 14 AB5 GLY C 81 LEU C 92 1 12 HELIX 15 AB6 ASP C 105 GLY C 116 1 12 HELIX 16 AB7 GLU C 117 ASP C 125 5 9 HELIX 17 AB8 PRO C 136 LEU C 155 1 20 HELIX 18 AB9 ASN D 71 GLY D 78 1 8 HELIX 19 AC1 GLY D 81 LEU D 92 1 12 HELIX 20 AC2 ASP D 105 GLY D 116 1 12 HELIX 21 AC3 GLU D 117 ASP D 125 5 9 HELIX 22 AC4 PRO D 136 LYS D 152 1 17 HELIX 23 AC5 LYS D 153 ILE D 156 5 4 SHEET 1 AA1 3 MSE A 54 LEU A 61 0 SHEET 2 AA1 3 HIS A 128 ALA A 135 -1 O ILE A 131 N GLN A 58 SHEET 3 AA1 3 LYS A 94 LEU A 98 -1 N LYS A 94 O GLU A 132 SHEET 1 AA2 3 MSE B 54 LEU B 61 0 SHEET 2 AA2 3 HIS B 128 ALA B 135 -1 O ILE B 131 N GLN B 58 SHEET 3 AA2 3 LYS B 94 LEU B 98 -1 N LYS B 94 O GLU B 132 SHEET 1 AA3 3 MSE C 54 LEU C 61 0 SHEET 2 AA3 3 HIS C 128 ALA C 135 -1 O ILE C 131 N GLN C 58 SHEET 3 AA3 3 LYS C 94 LEU C 98 -1 N LYS C 94 O GLU C 132 SHEET 1 AA4 3 MSE D 54 LEU D 61 0 SHEET 2 AA4 3 HIS D 128 ALA D 135 -1 O ILE D 131 N GLN D 58 SHEET 3 AA4 3 LYS D 94 LEU D 98 -1 N SER D 96 O LEU D 130 LINK C ASN A 53 N MSE A 54 1555 1555 1.34 LINK C MSE A 54 N LYS A 55 1555 1555 1.34 LINK C LYS A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N ASER A 96 1555 1555 1.33 LINK C MSE A 95 N BSER A 96 1555 1555 1.33 LINK C SER A 102 N MSE A 103 1555 1555 1.34 LINK C MSE A 103 N ARG A 104 1555 1555 1.33 LINK C ARG A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N GLY A 145 1555 1555 1.32 LINK C ASN B 53 N MSE B 54 1555 1555 1.34 LINK C MSE B 54 N LYS B 55 1555 1555 1.33 LINK C LYS B 94 N MSE B 95 1555 1555 1.31 LINK C MSE B 95 N SER B 96 1555 1555 1.35 LINK C SER B 102 N MSE B 103 1555 1555 1.32 LINK C MSE B 103 N ARG B 104 1555 1555 1.34 LINK C ARG B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N GLY B 145 1555 1555 1.34 LINK C ASN C 53 N MSE C 54 1555 1555 1.34 LINK C MSE C 54 N LYS C 55 1555 1555 1.32 LINK C LYS C 94 N MSE C 95 1555 1555 1.31 LINK C MSE C 95 N SER C 96 1555 1555 1.33 LINK C SER C 102 N MSE C 103 1555 1555 1.32 LINK C MSE C 103 N ARG C 104 1555 1555 1.31 LINK C ARG C 143 N MSE C 144 1555 1555 1.34 LINK C MSE C 144 N GLY C 145 1555 1555 1.33 LINK C ASN D 53 N MSE D 54 1555 1555 1.34 LINK C MSE D 54 N LYS D 55 1555 1555 1.33 LINK C LYS D 94 N MSE D 95 1555 1555 1.33 LINK C MSE D 95 N SER D 96 1555 1555 1.32 LINK C SER D 102 N MSE D 103 1555 1555 1.33 LINK C MSE D 103 N ARG D 104 1555 1555 1.34 LINK C ARG D 143 N MSE D 144 1555 1555 1.34 LINK C MSE D 144 N GLY D 145 1555 1555 1.33 SITE 1 AC1 5 ARG A 80 SER A 83 ARG A 86 HOH A 322 SITE 2 AC1 5 HOH A 328 CRYST1 57.120 85.920 59.070 90.00 117.23 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017507 0.000000 0.009009 0.00000 SCALE2 0.000000 0.011639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019039 0.00000