HEADER TOXIN 04-NOV-15 5ELB TITLE CHOLERA TOXIN CLASSICAL B-PENTAMER IN COMPLEX WITH LEWIS-Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLERA ENTEROTOXIN B SUBUNIT; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J; COMPND 4 SYNONYM: CHOLERA ENTEROTOXIN SUBUNIT B,CHOLERA TOXIN B PROTEIN (CTB), COMPND 5 CHOLERA TOXIN B SUBUNIT,CHOLERA TOXIN BETA SUBUNIT,CHOLERA TOXIN COMPND 6 SUBUNIT B,CHOLERAE TOXIN B SUBUNIT,CTXB; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1; SOURCE 3 ORGANISM_TAXID: 127906; SOURCE 4 GENE: CTXB, EN12_07055, ERS013160_03498, ERS013165_03981, SOURCE 5 ERS013197_06217, ERS013202_03762, ERS013206_03003, ERS013207_03244, SOURCE 6 ERS013212_03447; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CHOLERA TOXIN B-PENTAMER, LEWIS-Y, COMPLEX, BLOOD GROUP KEYWDS 2 OLIGOSACCHARIDE/ANTIGEN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HEGGELUND,D.BURSCHOWSKY,U.KRENGEL REVDAT 7 20-NOV-24 5ELB 1 REMARK REVDAT 6 10-JAN-24 5ELB 1 HETSYN SHEET REVDAT 5 29-JUL-20 5ELB 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 21-NOV-18 5ELB 1 SOURCE REVDAT 3 11-OCT-17 5ELB 1 REMARK REVDAT 2 27-APR-16 5ELB 1 JRNL REVDAT 1 30-MAR-16 5ELB 0 JRNL AUTH J.E.HEGGELUND,D.BURSCHOWSKY,V.A.BJRNESTAD,V.HODNIK, JRNL AUTH 2 G.ANDERLUH,U.KRENGEL JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURES ELUCIDATE THE MOLECULAR JRNL TITL 2 BASIS OF CHOLERA BLOOD GROUP DEPENDENCE. JRNL REF PLOS PATHOG. V. 12 05567 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27082955 JRNL DOI 10.1371/JOURNAL.PPAT.1005567 REMARK 2 REMARK 2 RESOLUTION. 1.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 3 NUMBER OF REFLECTIONS : 351626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 18334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 857 REMARK 3 SOLVENT ATOMS : 1550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10284 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 9758 ; 0.005 ; 0.021 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14142 ; 2.218 ; 2.062 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22897 ; 1.295 ; 3.056 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1217 ; 7.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 403 ;41.333 ;25.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1768 ;11.614 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;30.642 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1872 ; 0.192 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10575 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2061 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4438 ; 1.634 ; 1.127 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4437 ; 1.603 ; 1.126 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5632 ; 1.881 ; 1.691 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5633 ; 1.882 ; 1.691 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5846 ; 2.680 ; 1.468 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 5847 ; 2.680 ; 1.468 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 8452 ; 3.193 ; 2.137 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12720 ; 5.915 ;12.313 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12721 ; 5.915 ;12.313 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 20042 ; 3.535 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 321 ;38.855 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 21012 ;12.706 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ELB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 369957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.080 REMARK 200 RESOLUTION RANGE LOW (A) : 49.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3CHB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE-TRIS, 10% PEG1000, 10% REMARK 280 PEG3350, 10% MPD, 0.03 M CALCIUM CHLORIDE, 0.03 M MAGNESIUM REMARK 280 CHLORIDE. MICROSEEDING., PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.16650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.00950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.49200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.00950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.16650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.49200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H, I, J, P, Q, R, S, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GAL J 1201 O HOH J 1301 2.12 REMARK 500 O HOH A 334 O HOH G 358 2.15 REMARK 500 O HOH C 406 O HOH C 429 2.15 REMARK 500 O HOH H 1441 O HOH H 1451 2.17 REMARK 500 O HOH G 346 O HOH G 418 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 310 O HOH J 1408 3545 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 29 CD GLU B 29 OE1 -0.073 REMARK 500 GLU E 11 CD GLU E 11 OE1 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 35 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LYS B 63 CD - CE - NZ ANGL. DEV. = 15.0 DEGREES REMARK 500 GLU C 29 CG - CD - OE1 ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG C 67 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 LYS C 81 CD - CE - NZ ANGL. DEV. = 20.9 DEGREES REMARK 500 ARG D 67 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG D 67 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 LYS D 81 CD - CE - NZ ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG E 35 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG E 35 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP E 59 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG E 67 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG F 67 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG F 67 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LYS G 34 CD - CE - NZ ANGL. DEV. = 17.7 DEGREES REMARK 500 ARG G 35 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG G 67 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG G 73 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG I 67 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS J 23 CD - CE - NZ ANGL. DEV. = 23.6 DEGREES REMARK 500 LYS J 43 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG J 67 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS J 81 CD - CE - NZ ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 83 -70.28 -78.73 REMARK 500 LYS H 34 -6.94 77.69 REMARK 500 LYS H 34 -0.63 73.04 REMARK 500 GLU I 83 -70.20 -78.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 102 ASN B 103 148.82 REMARK 500 ALA G 102 ASN G 103 148.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 463 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 464 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH E 440 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 79 OE1 REMARK 620 2 GLU A 79 OE2 49.5 REMARK 620 3 BCN A 204 O22 78.4 126.3 REMARK 620 4 BCN A 204 O4 154.6 141.9 81.5 REMARK 620 5 BCN A 204 O6 79.7 81.0 104.2 120.5 REMARK 620 6 HOH A 406 O 79.1 80.5 77.6 81.5 157.9 REMARK 620 7 GLU H 79 OE2 121.1 72.0 159.9 78.4 85.7 99.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 79 OE2 REMARK 620 2 BCN A 206 O6 80.1 REMARK 620 3 BCN A 206 O21 160.0 80.5 REMARK 620 4 BCN A 206 O4 82.9 124.4 104.4 REMARK 620 5 HOH A 411 O 97.8 77.1 82.4 158.0 REMARK 620 6 GLU H 79 OE1 121.1 152.3 78.8 78.8 82.1 REMARK 620 7 GLU H 79 OE2 71.9 139.4 127.2 81.1 78.2 50.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 79 OE1 REMARK 620 2 GLU B 79 OE2 50.9 REMARK 620 3 BCN B 202 O6 152.1 139.4 REMARK 620 4 BCN B 202 O4 81.1 81.4 122.5 REMARK 620 5 BCN B 202 O22 76.6 126.4 83.2 102.8 REMARK 620 6 HOH F1363 O 80.4 80.5 77.6 159.7 80.8 REMARK 620 7 GLU G 79 OE2 121.8 71.4 78.7 83.9 161.5 99.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 79 OE2 REMARK 620 2 BCN B 206 O21 162.1 REMARK 620 3 BCN B 206 O6 80.8 82.2 REMARK 620 4 BCN B 206 O4 81.3 102.6 119.7 REMARK 620 5 HOH B 410 O 105.3 78.2 84.0 156.2 REMARK 620 6 GLU G 79 OE1 120.0 77.8 154.9 79.8 77.2 REMARK 620 7 GLU G 79 OE2 71.2 126.4 141.3 82.4 78.4 50.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 79 OE1 REMARK 620 2 GLU C 79 OE2 50.6 REMARK 620 3 BCN C 206 O22 126.8 77.5 REMARK 620 4 BCN C 206 O4 81.4 79.1 101.6 REMARK 620 5 BCN C 206 O6 140.8 153.8 82.4 121.7 REMARK 620 6 GLU F 79 OE1 71.4 121.2 161.2 84.5 79.3 REMARK 620 7 HOH J1325 O 83.8 85.7 81.3 163.4 74.8 98.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 79 OE1 REMARK 620 2 BCN C 205 O6 80.9 REMARK 620 3 BCN C 205 O21 161.1 108.5 REMARK 620 4 BCN C 205 O4 79.2 117.6 81.9 REMARK 620 5 HOH C 418 O 94.6 162.1 81.2 78.1 REMARK 620 6 GLU F 79 OE1 71.2 80.1 125.7 142.7 82.0 REMARK 620 7 GLU F 79 OE2 121.1 84.1 76.9 153.7 83.5 50.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 355 O REMARK 620 2 GLU D 79 OE2 92.4 REMARK 620 3 BCN D 201 O21 82.4 160.5 REMARK 620 4 BCN D 201 O4 158.1 85.3 106.4 REMARK 620 5 BCN D 201 O6 79.5 79.6 81.0 121.3 REMARK 620 6 GLU J 79 OE1 81.7 120.6 77.5 80.8 153.0 REMARK 620 7 GLU J 79 OE2 76.9 69.3 127.0 82.0 139.6 51.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 79 OE1 REMARK 620 2 GLU D 79 OE2 50.7 REMARK 620 3 BCN D 203 O22 77.7 126.2 REMARK 620 4 BCN D 203 O4 80.2 83.8 103.5 REMARK 620 5 BCN D 203 O6 153.7 137.4 83.1 122.2 REMARK 620 6 HOH D 397 O 83.9 78.6 82.4 161.4 75.7 REMARK 620 7 GLU J 79 OE2 119.5 70.0 162.6 83.4 79.7 96.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 357 O REMARK 620 2 GLU E 79 OE2 92.6 REMARK 620 3 BCN E 201 O21 84.3 162.6 REMARK 620 4 BCN E 201 O4 159.5 84.4 104.4 REMARK 620 5 BCN E 201 O6 77.3 80.3 82.3 121.9 REMARK 620 6 GLU I 79 OE1 84.2 119.4 77.4 79.7 153.7 REMARK 620 7 GLU I 79 OE2 78.1 69.6 125.9 81.9 139.8 50.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 79 OE1 REMARK 620 2 GLU E 79 OE2 50.7 REMARK 620 3 BCN E 203 O22 78.7 127.2 REMARK 620 4 BCN E 203 O4 80.1 79.5 109.0 REMARK 620 5 BCN E 203 O6 155.6 141.0 81.1 119.9 REMARK 620 6 HOH E 306 O 85.3 79.9 82.1 159.3 78.3 REMARK 620 7 GLU I 79 OE2 120.0 69.8 160.0 82.9 79.0 91.9 REMARK 620 N 1 2 3 4 5 6 DBREF 5ELB A 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB B 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB C 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB D 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB E 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB F 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB G 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB H 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB I 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELB J 1 103 UNP Q57193 Q57193_VIBCL 22 124 SEQRES 1 A 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 A 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 A 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 A 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 A 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 A 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 A 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 A 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 B 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 B 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 B 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 B 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 B 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 B 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 B 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 B 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 C 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 C 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 C 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 C 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 C 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 C 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 C 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 C 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 D 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 D 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 D 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 D 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 D 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 D 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 D 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 D 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 E 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 E 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 E 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 E 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 E 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 E 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 E 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 E 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 F 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 F 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 F 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 F 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 F 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 F 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 F 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 F 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 G 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 G 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 G 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 G 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 G 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 G 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 G 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 G 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 H 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 H 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 H 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 H 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 H 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 H 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 H 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 H 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 I 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 I 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 I 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 I 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 I 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 I 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 I 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 I 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 J 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 J 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 J 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 J 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 J 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 J 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 J 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 J 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN HET NDG K 1 30 HET GAL K 2 22 HET FUC K 3 20 HET FUC K 4 20 HET NDG L 1 30 HET GAL L 2 22 HET FUC L 3 20 HET FUC L 4 20 HET NDG M 1 30 HET GAL M 2 22 HET FUC M 3 20 HET FUC M 4 20 HET NDG N 1 30 HET GAL N 2 22 HET FUC N 3 20 HET FUC N 4 20 HET NDG O 1 15 HET GAL O 2 11 HET FUC O 3 10 HET FUC O 4 10 HET NDG P 1 15 HET GAL P 2 11 HET FUC P 3 10 HET FUC P 4 10 HET NDG Q 1 30 HET GAL Q 2 22 HET FUC Q 3 20 HET FUC Q 4 20 HET NDG R 1 15 HET GAL R 2 11 HET FUC R 3 10 HET FUC R 4 10 HET NAG S 1 15 HET FUC S 2 20 HET NDG S 3 15 HET GAL S 4 22 HET FUC S 5 20 HET NAG T 1 15 HET FUC T 2 20 HET NDG T 3 15 HET GAL T 4 22 HET FUC T 5 20 HET CA A 201 1 HET GAL A 202 12 HET GLA A 203 12 HET BCN A 204 11 HET CA A 205 1 HET BCN A 206 11 HET CA B 201 1 HET BCN B 202 11 HET GAL B 203 12 HET GLA B 204 12 HET CA B 205 1 HET BCN B 206 11 HET CA C 201 1 HET GAL C 202 12 HET GLA C 203 12 HET CA C 204 1 HET BCN C 205 11 HET BCN C 206 11 HET BCN D 201 11 HET CA D 202 1 HET BCN D 203 11 HET GAL D 204 12 HET GLA D 205 12 HET CA D 206 1 HET BCN E 201 11 HET CA E 202 1 HET BCN E 203 11 HET GAL E 204 12 HET GLA E 205 12 HET CA E 206 1 HET GLA F1201 12 HET GAL F1202 12 HET PEG G 201 7 HET GLA G 202 12 HET GAL G 203 12 HET GAL H1201 12 HET GLA H1202 12 HET GAL I1201 12 HET GLA I1202 12 HET GAL J1201 12 HET GLA J1202 12 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM BCN BICINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 11 NDG 10(C8 H15 N O6) FORMUL 11 GAL 20(C6 H12 O6) FORMUL 11 FUC 20(C6 H12 O5) FORMUL 19 NAG 2(C8 H15 N O6) FORMUL 21 CA 10(CA 2+) FORMUL 23 GLA 10(C6 H12 O6) FORMUL 24 BCN 10(C6 H13 N O4) FORMUL 53 PEG C4 H10 O3 FORMUL 62 HOH *1550(H2 O) HELIX 1 AA1 ASN A 4 ALA A 10 1 7 HELIX 2 AA2 ILE A 58 SER A 60 5 3 HELIX 3 AA3 GLN A 61 GLU A 79 1 19 HELIX 4 AA4 ASN B 4 ALA B 10 1 7 HELIX 5 AA5 SER B 60 GLU B 79 1 20 HELIX 6 AA6 ASN C 4 ALA C 10 1 7 HELIX 7 AA7 SER C 60 THR C 78 1 19 HELIX 8 AA8 ASN D 4 GLU D 11 1 8 HELIX 9 AA9 ILE D 58 SER D 60 5 3 HELIX 10 AB1 GLN D 61 LEU D 77 1 17 HELIX 11 AB2 ASN E 4 ALA E 10 1 7 HELIX 12 AB3 SER E 60 THR E 78 1 19 HELIX 13 AB4 ASN F 4 ALA F 10 1 7 HELIX 14 AB5 SER F 60 THR F 78 1 19 HELIX 15 AB6 ASN G 4 GLU G 11 1 8 HELIX 16 AB7 ILE G 58 SER G 60 5 3 HELIX 17 AB8 GLN G 61 GLU G 79 1 19 HELIX 18 AB9 ASN H 4 ALA H 10 1 7 HELIX 19 AC1 SER H 60 GLU H 79 1 20 HELIX 20 AC2 ASN I 4 GLU I 11 1 8 HELIX 21 AC3 SER I 60 GLU I 79 1 20 HELIX 22 AC4 ASN J 4 ALA J 10 1 7 HELIX 23 AC5 ILE J 58 SER J 60 5 3 HELIX 24 AC6 GLN J 61 GLU J 79 1 19 SHEET 1 AA 7 THR A 15 LYS A 23 0 SHEET 2 AA 7 LYS A 81 TRP A 88 -1 SHEET 3 AA 7 HIS A 94 ALA A 102 -1 SHEET 4 AA 7 THR A 47 VAL A 50 1 SHEET 5 AA 7 MET A 37 THR A 41 -1 SHEET 6 AA 7 SER A 26 SER A 30 -1 SHEET 7 AA 7 HIS E 94 ALA E 102 -1 SHEET 1 AB 2 THR A 15 LYS A 23 0 SHEET 2 AB 2 HIS A 94 ALA A 102 -1 SHEET 1 FA 7 THR F 15 ASP F 22 0 SHEET 2 FA 7 VAL F 82 TRP F 88 1 SHEET 3 FA 7 HIS F 94 ALA F 102 1 SHEET 4 FA 7 THR F 47 VAL F 50 1 SHEET 5 FA 7 MET F 37 THR F 41 -1 SHEET 6 FA 7 SER F 26 SER F 30 -1 SHEET 7 FA 7 HIS J 94 ALA J 102 -1 SHEET 1 FB 2 THR F 15 ASP F 22 0 SHEET 2 FB 2 HIS F 94 ALA F 102 1 SSBOND 1 CYS A 9 CYS A 86 1555 1555 2.06 SSBOND 2 CYS B 9 CYS B 86 1555 1555 2.07 SSBOND 3 CYS C 9 CYS C 86 1555 1555 2.08 SSBOND 4 CYS D 9 CYS D 86 1555 1555 2.07 SSBOND 5 CYS E 9 CYS E 86 1555 1555 2.07 SSBOND 6 CYS F 9 CYS F 86 1555 1555 2.11 SSBOND 7 CYS G 9 CYS G 86 1555 1555 2.10 SSBOND 8 CYS H 9 CYS H 86 1555 1555 2.05 SSBOND 9 CYS I 9 CYS I 86 1555 1555 2.12 SSBOND 10 CYS J 9 CYS J 86 1555 1555 2.03 LINK O4 ANDG K 1 C1 AGAL K 2 1555 1555 1.40 LINK O4 BNDG K 1 C1 BGAL K 2 1555 1555 1.36 LINK O3 ANDG K 1 C1 AFUC K 4 1555 1555 1.43 LINK O3 BNDG K 1 C1 BFUC K 4 1555 1555 1.43 LINK O2 AGAL K 2 C1 AFUC K 3 1555 1555 1.43 LINK O2 BGAL K 2 C1 BFUC K 3 1555 1555 1.41 LINK O4 ANDG L 1 C1 AGAL L 2 1555 1555 1.45 LINK O4 BNDG L 1 C1 BGAL L 2 1555 1555 1.43 LINK O3 ANDG L 1 C1 AFUC L 4 1555 1555 1.44 LINK O3 BNDG L 1 C1 BFUC L 4 1555 1555 1.42 LINK O2 AGAL L 2 C1 AFUC L 3 1555 1555 1.43 LINK O2 BGAL L 2 C1 BFUC L 3 1555 1555 1.42 LINK O4 ANDG M 1 C1 AGAL M 2 1555 1555 1.49 LINK O4 BNDG M 1 C1 BGAL M 2 1555 1555 1.45 LINK O3 ANDG M 1 C1 AFUC M 4 1555 1555 1.40 LINK O3 BNDG M 1 C1 BFUC M 4 1555 1555 1.38 LINK O2 AGAL M 2 C1 AFUC M 3 1555 1555 1.47 LINK O2 BGAL M 2 C1 BFUC M 3 1555 1555 1.42 LINK O4 ANDG N 1 C1 AGAL N 2 1555 1555 1.44 LINK O4 BNDG N 1 C1 BGAL N 2 1555 1555 1.33 LINK O3 ANDG N 1 C1 AFUC N 4 1555 1555 1.41 LINK O3 BNDG N 1 C1 BFUC N 4 1555 1555 1.44 LINK O2 AGAL N 2 C1 AFUC N 3 1555 1555 1.47 LINK O2 BGAL N 2 C1 BFUC N 3 1555 1555 1.41 LINK O4 NDG O 1 C1 GAL O 2 1555 1555 1.45 LINK O3 NDG O 1 C1 FUC O 4 1555 1555 1.46 LINK O2 GAL O 2 C1 FUC O 3 1555 1555 1.47 LINK O4 NDG P 1 C1 GAL P 2 1555 1555 1.40 LINK O3 NDG P 1 C1 FUC P 4 1555 1555 1.43 LINK O2 GAL P 2 C1 FUC P 3 1555 1555 1.48 LINK O4 ANDG Q 1 C1 AGAL Q 2 1555 1555 1.45 LINK O4 BNDG Q 1 C1 BGAL Q 2 1555 1555 1.42 LINK O3 ANDG Q 1 C1 AFUC Q 4 1555 1555 1.44 LINK O3 BNDG Q 1 C1 BFUC Q 4 1555 1555 1.46 LINK O2 AGAL Q 2 C1 AFUC Q 3 1555 1555 1.36 LINK O2 BGAL Q 2 C1 BFUC Q 3 1555 1555 1.45 LINK O4 NDG R 1 C1 GAL R 2 1555 1555 1.43 LINK O3 NDG R 1 C1 FUC R 4 1555 1555 1.43 LINK O2 GAL R 2 C1 FUC R 3 1555 1555 1.46 LINK O3 BNAG S 1 C1 BFUC S 2 1555 1555 1.40 LINK O4 BNAG S 1 C1 BGAL S 4 1555 1555 1.43 LINK C1 AFUC S 2 O3 ANDG S 3 1555 1555 1.41 LINK O4 ANDG S 3 C1 AGAL S 4 1555 1555 1.40 LINK O2 AGAL S 4 C1 AFUC S 5 1555 1555 1.42 LINK O2 BGAL S 4 C1 BFUC S 5 1555 1555 1.43 LINK O3 BNAG T 1 C1 BFUC T 2 1555 1555 1.44 LINK O4 BNAG T 1 C1 BGAL T 4 1555 1555 1.44 LINK C1 AFUC T 2 O3 ANDG T 3 1555 1555 1.43 LINK O4 ANDG T 3 C1 AGAL T 4 1555 1555 1.47 LINK O2 AGAL T 4 C1 AFUC T 5 1555 1555 1.43 LINK O2 BGAL T 4 C1 BFUC T 5 1555 1555 1.45 LINK OE1 GLU A 79 CA CA A 201 1555 1555 2.44 LINK OE2 GLU A 79 CA CA A 201 1555 1555 2.58 LINK OE2 GLU A 79 CA CA A 205 1555 1555 2.37 LINK CA CA A 201 O22 BCN A 204 1555 1555 2.32 LINK CA CA A 201 O4 BCN A 204 1555 1555 2.36 LINK CA CA A 201 O6 BCN A 204 1555 1555 2.30 LINK CA CA A 201 O HOH A 406 1555 1555 2.44 LINK CA CA A 201 OE2 GLU H 79 1555 1555 2.36 LINK CA CA A 205 O6 BCN A 206 1555 1555 2.42 LINK CA CA A 205 O21 BCN A 206 1555 1555 2.33 LINK CA CA A 205 O4 BCN A 206 1555 1555 2.28 LINK CA CA A 205 O HOH A 411 1555 1555 2.39 LINK CA CA A 205 OE1 GLU H 79 1555 1555 2.48 LINK CA CA A 205 OE2 GLU H 79 1555 1555 2.57 LINK OE1 GLU B 79 CA CA B 201 1555 1555 2.44 LINK OE2 GLU B 79 CA CA B 201 1555 1555 2.56 LINK OE2 GLU B 79 CA CA B 205 1555 1555 2.37 LINK CA CA B 201 O6 BCN B 202 1555 1555 2.38 LINK CA CA B 201 O4 BCN B 202 1555 1555 2.36 LINK CA CA B 201 O22 BCN B 202 1555 1555 2.34 LINK CA CA B 201 O HOH F1363 1555 1555 2.36 LINK CA CA B 201 OE2 GLU G 79 1555 1555 2.35 LINK CA CA B 205 O21 BCN B 206 1555 1555 2.30 LINK CA CA B 205 O6 BCN B 206 1555 1555 2.33 LINK CA CA B 205 O4 BCN B 206 1555 1555 2.23 LINK CA CA B 205 O HOH B 410 1555 1555 2.43 LINK CA CA B 205 OE1 GLU G 79 1555 1555 2.44 LINK CA CA B 205 OE2 GLU G 79 1555 1555 2.55 LINK OE1 GLU C 79 CA CA C 201 1555 1555 2.52 LINK OE2 GLU C 79 CA CA C 201 1555 1555 2.46 LINK OE1 GLU C 79 CA CA C 204 1555 1555 2.35 LINK CA CA C 201 O22 BCN C 206 1555 1555 2.33 LINK CA CA C 201 O4 BCN C 206 1555 1555 2.30 LINK CA CA C 201 O6 BCN C 206 1555 1555 2.32 LINK CA CA C 201 OE1 GLU F 79 1555 1555 2.39 LINK CA CA C 201 O HOH J1325 1555 1555 2.44 LINK CA CA C 204 O6 BCN C 205 1555 1555 2.19 LINK CA CA C 204 O21 BCN C 205 1555 1555 2.32 LINK CA CA C 204 O4 BCN C 205 1555 1555 2.39 LINK CA CA C 204 O HOH C 418 1555 1555 2.51 LINK CA CA C 204 OE1 GLU F 79 1555 1555 2.57 LINK CA CA C 204 OE2 GLU F 79 1555 1555 2.43 LINK O HOH C 355 CA CA D 206 1555 1555 2.40 LINK OE1 GLU D 79 CA CA D 202 1555 1555 2.47 LINK OE2 GLU D 79 CA CA D 202 1555 1555 2.56 LINK OE2 GLU D 79 CA CA D 206 1555 1555 2.36 LINK O21 BCN D 201 CA CA D 206 1555 1555 2.35 LINK O4 BCN D 201 CA CA D 206 1555 1555 2.35 LINK O6 BCN D 201 CA CA D 206 1555 1555 2.39 LINK CA CA D 202 O22 BCN D 203 1555 1555 2.35 LINK CA CA D 202 O4 BCN D 203 1555 1555 2.37 LINK CA CA D 202 O6 BCN D 203 1555 1555 2.39 LINK CA CA D 202 O HOH D 397 1555 1555 2.44 LINK CA CA D 202 OE2 GLU J 79 1555 1555 2.35 LINK CA CA D 206 OE1 GLU J 79 1555 1555 2.44 LINK CA CA D 206 OE2 GLU J 79 1555 1555 2.59 LINK O HOH D 357 CA CA E 206 1555 1555 2.37 LINK OE1 GLU E 79 CA CA E 202 1555 1555 2.45 LINK OE2 GLU E 79 CA CA E 202 1555 1555 2.56 LINK OE2 GLU E 79 CA CA E 206 1555 1555 2.39 LINK O21 BCN E 201 CA CA E 206 1555 1555 2.36 LINK O4 BCN E 201 CA CA E 206 1555 1555 2.29 LINK O6 BCN E 201 CA CA E 206 1555 1555 2.44 LINK CA CA E 202 O22 BCN E 203 1555 1555 2.36 LINK CA CA E 202 O4 BCN E 203 1555 1555 2.30 LINK CA CA E 202 O6 BCN E 203 1555 1555 2.41 LINK CA CA E 202 O HOH E 306 1555 1555 2.40 LINK CA CA E 202 OE2 GLU I 79 1555 1555 2.39 LINK CA CA E 206 OE1 GLU I 79 1555 1555 2.46 LINK CA CA E 206 OE2 GLU I 79 1555 1555 2.57 CISPEP 1 THR A 92 PRO A 93 0 -13.30 CISPEP 2 THR B 92 PRO B 93 0 -11.58 CISPEP 3 THR B 92 PRO B 93 0 -12.60 CISPEP 4 THR C 92 PRO C 93 0 -12.37 CISPEP 5 THR D 92 PRO D 93 0 -10.44 CISPEP 6 THR E 92 PRO E 93 0 -6.96 CISPEP 7 THR F 92 PRO F 93 0 -6.71 CISPEP 8 THR G 92 PRO G 93 0 -9.92 CISPEP 9 THR H 92 PRO H 93 0 -13.45 CISPEP 10 THR I 92 PRO I 93 0 -13.89 CISPEP 11 THR J 92 PRO J 93 0 -8.93 CRYST1 72.333 98.984 152.019 90.00 90.00 90.00 P 21 21 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006578 0.00000