HEADER PROTEIN TRANSPORT 05-NOV-15 5ELQ TITLE CRYSTAL STRUCTURE OF THE SNX27 PDZ DOMAIN BOUND TO THE C-TERMINAL TITLE 2 DGKZETA PDZ BINDING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-27; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ DOMAIN (UNP RESIDUES 39-133); COMPND 5 SYNONYM: MAP-RESPONSIVE GENE PROTEIN,METHAMPHETAMINE-RESPONSIVE COMPND 6 TRANSCRIPT 1 PROTEIN,PDZ-PROTEIN MRT1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLU-ASP-GLN-GLU-THR-ALA-VAL; COMPND 10 CHAIN: P, C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: SNX27, MRT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ENDOSOME, PDZ DOMAIN, SORTING NEXIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.M.COLLINS,T.CLAIRFEUILLE REVDAT 6 27-SEP-23 5ELQ 1 REMARK REVDAT 5 08-JAN-20 5ELQ 1 REMARK REVDAT 4 27-SEP-17 5ELQ 1 REMARK REVDAT 3 19-OCT-16 5ELQ 1 JRNL REVDAT 2 21-SEP-16 5ELQ 1 JRNL REVDAT 1 07-SEP-16 5ELQ 0 JRNL AUTH T.CLAIRFEUILLE,C.MAS,A.S.CHAN,Z.YANG,M.TELLO-LAFOZ, JRNL AUTH 2 M.CHANDRA,J.WIDAGDO,M.C.KERR,B.PAUL,I.MERIDA,R.D.TEASDALE, JRNL AUTH 3 N.J.PAVLOS,V.ANGGONO,B.M.COLLINS JRNL TITL A MOLECULAR CODE FOR ENDOSOMAL RECYCLING OF PHOSPHORYLATED JRNL TITL 2 CARGOS BY THE SNX27-RETROMER COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 921 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27595347 JRNL DOI 10.1038/NSMB.3290 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 78149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9361 - 3.3283 0.99 2915 149 0.1651 0.1755 REMARK 3 2 3.3283 - 2.6466 1.00 2832 141 0.1565 0.1911 REMARK 3 3 2.6466 - 2.3135 1.00 2762 160 0.1487 0.1564 REMARK 3 4 2.3135 - 2.1026 1.00 2785 150 0.1308 0.1621 REMARK 3 5 2.1026 - 1.9522 1.00 2761 131 0.1328 0.1591 REMARK 3 6 1.9522 - 1.8373 1.00 2755 132 0.1386 0.1504 REMARK 3 7 1.8373 - 1.7455 0.99 2706 152 0.1511 0.1545 REMARK 3 8 1.7455 - 1.6696 0.99 2739 150 0.1488 0.1805 REMARK 3 9 1.6696 - 1.6054 0.99 2729 137 0.1486 0.1621 REMARK 3 10 1.6054 - 1.5500 0.99 2685 146 0.1560 0.1684 REMARK 3 11 1.5500 - 1.5016 0.98 2701 139 0.1490 0.1581 REMARK 3 12 1.5016 - 1.4587 0.99 2664 151 0.1602 0.1729 REMARK 3 13 1.4587 - 1.4204 0.98 2711 127 0.1648 0.1568 REMARK 3 14 1.4204 - 1.3857 0.98 2621 144 0.1718 0.2071 REMARK 3 15 1.3857 - 1.3543 0.98 2634 149 0.1695 0.1758 REMARK 3 16 1.3543 - 1.3255 0.97 2619 149 0.1733 0.1977 REMARK 3 17 1.3255 - 1.2990 0.97 2685 131 0.1812 0.2091 REMARK 3 18 1.2990 - 1.2745 0.97 2614 142 0.1881 0.2157 REMARK 3 19 1.2745 - 1.2517 0.96 2597 140 0.1925 0.2139 REMARK 3 20 1.2517 - 1.2305 0.95 2581 128 0.1978 0.1918 REMARK 3 21 1.2305 - 1.2107 0.95 2562 142 0.1962 0.2026 REMARK 3 22 1.2107 - 1.1920 0.94 2549 126 0.2068 0.2067 REMARK 3 23 1.1920 - 1.1745 0.94 2519 160 0.2007 0.2462 REMARK 3 24 1.1745 - 1.1580 0.94 2540 122 0.2120 0.2280 REMARK 3 25 1.1580 - 1.1423 0.94 2538 116 0.2152 0.2386 REMARK 3 26 1.1423 - 1.1275 0.93 2515 146 0.2348 0.2591 REMARK 3 27 1.1275 - 1.1134 0.92 2470 150 0.2377 0.2265 REMARK 3 28 1.1134 - 1.1000 0.90 2426 124 0.2466 0.2490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1586 REMARK 3 ANGLE : 1.271 2118 REMARK 3 CHIRALITY : 0.073 242 REMARK 3 PLANARITY : 0.007 278 REMARK 3 DIHEDRAL : 16.192 618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9052 9.6717 56.6284 REMARK 3 T TENSOR REMARK 3 T11: 0.0636 T22: 0.0680 REMARK 3 T33: 0.0688 T12: -0.0134 REMARK 3 T13: -0.0047 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.9803 L22: 2.2815 REMARK 3 L33: 2.5805 L12: -1.2085 REMARK 3 L13: 0.3133 L23: 0.4371 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: 0.2479 S13: -0.1881 REMARK 3 S21: 0.0057 S22: -0.0665 S23: 0.0301 REMARK 3 S31: 0.2449 S32: -0.0523 S33: -0.0320 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.8022 22.8005 74.5444 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.0897 REMARK 3 T33: 0.0742 T12: 0.0233 REMARK 3 T13: 0.0141 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.7344 L22: 3.8384 REMARK 3 L33: 8.1911 L12: 0.4108 REMARK 3 L13: 2.5095 L23: -3.4674 REMARK 3 S TENSOR REMARK 3 S11: -0.1110 S12: -0.1336 S13: 0.0670 REMARK 3 S21: 0.2958 S22: 0.0169 S23: 0.0274 REMARK 3 S31: -0.5315 S32: 0.0038 S33: 0.1110 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5414 9.7103 78.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1662 REMARK 3 T33: 0.1769 T12: -0.0337 REMARK 3 T13: -0.0153 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 5.9867 L22: 7.3243 REMARK 3 L33: 6.9911 L12: 1.7087 REMARK 3 L13: -1.2059 L23: 0.7571 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: -0.0605 S13: -0.5050 REMARK 3 S21: -0.1528 S22: -0.1605 S23: 0.8422 REMARK 3 S31: 0.3886 S32: -0.7436 S33: 0.0249 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4006 10.0044 60.4929 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0762 REMARK 3 T33: 0.0757 T12: -0.0070 REMARK 3 T13: -0.0061 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.8468 L22: 1.5477 REMARK 3 L33: 5.0405 L12: 0.4627 REMARK 3 L13: 1.6706 L23: 1.9197 REMARK 3 S TENSOR REMARK 3 S11: 0.1091 S12: 0.0086 S13: -0.1500 REMARK 3 S21: 0.0689 S22: -0.0868 S23: 0.0249 REMARK 3 S31: 0.2470 S32: -0.1952 S33: -0.0110 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.9802 10.7491 68.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.0677 T22: 0.0651 REMARK 3 T33: 0.0376 T12: -0.0036 REMARK 3 T13: -0.0060 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.8973 L22: 7.5206 REMARK 3 L33: 4.3892 L12: 2.1109 REMARK 3 L13: -0.5463 L23: -2.0350 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: -0.1478 S13: -0.0089 REMARK 3 S21: 0.2765 S22: 0.1056 S23: 0.1612 REMARK 3 S31: 0.1820 S32: -0.0739 S33: -0.0241 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.1345 17.6159 65.5651 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0618 REMARK 3 T33: 0.0682 T12: -0.0093 REMARK 3 T13: 0.0049 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.6770 L22: 0.5589 REMARK 3 L33: 4.0354 L12: -0.5785 REMARK 3 L13: -0.0991 L23: 0.1200 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: -0.0134 S13: 0.0739 REMARK 3 S21: 0.0318 S22: 0.0283 S23: -0.0272 REMARK 3 S31: -0.0796 S32: 0.1072 S33: -0.0866 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2112 9.5842 59.1476 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0788 REMARK 3 T33: 0.0664 T12: -0.0024 REMARK 3 T13: -0.0242 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 3.9294 L22: 3.7046 REMARK 3 L33: 7.6663 L12: 1.3981 REMARK 3 L13: -3.2981 L23: -2.4126 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.3238 S13: -0.1167 REMARK 3 S21: 0.0097 S22: 0.0957 S23: -0.0017 REMARK 3 S31: 0.2159 S32: -0.1924 S33: -0.0147 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 201 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1360 22.9702 61.7309 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0838 REMARK 3 T33: 0.1216 T12: 0.0052 REMARK 3 T13: -0.0035 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 5.5942 L22: 6.6148 REMARK 3 L33: 6.1160 L12: 0.9363 REMARK 3 L13: 0.5885 L23: -0.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.2379 S13: 0.5120 REMARK 3 S21: 0.2699 S22: -0.0539 S23: 0.1382 REMARK 3 S31: -0.4368 S32: -0.1542 S33: 0.0297 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.4345 9.0969 93.2818 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0454 REMARK 3 T33: 0.0655 T12: 0.0088 REMARK 3 T13: -0.0100 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.9373 L22: 2.3094 REMARK 3 L33: 2.0278 L12: 1.0113 REMARK 3 L13: 0.6618 L23: 0.0788 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.1241 S13: -0.1209 REMARK 3 S21: -0.0289 S22: -0.0040 S23: 0.0398 REMARK 3 S31: 0.1924 S32: -0.0627 S33: -0.0290 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.5001 22.7609 75.9854 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.0885 REMARK 3 T33: 0.0916 T12: -0.0136 REMARK 3 T13: -0.0054 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.3912 L22: 2.5178 REMARK 3 L33: 8.3388 L12: 0.4760 REMARK 3 L13: 2.2400 L23: 3.0551 REMARK 3 S TENSOR REMARK 3 S11: -0.1638 S12: 0.1164 S13: 0.1071 REMARK 3 S21: -0.2841 S22: -0.0329 S23: 0.0302 REMARK 3 S31: -0.6759 S32: -0.2028 S33: 0.1519 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.9317 10.1031 70.7542 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1601 REMARK 3 T33: 0.1973 T12: 0.0314 REMARK 3 T13: -0.0044 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.6612 L22: 3.0593 REMARK 3 L33: 7.7966 L12: -2.1316 REMARK 3 L13: -0.6253 L23: -1.2445 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: -0.0662 S13: -0.4464 REMARK 3 S21: 0.1118 S22: -0.0658 S23: -0.7981 REMARK 3 S31: 0.5346 S32: 0.8831 S33: 0.0613 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.2837 10.3955 90.1358 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0318 REMARK 3 T33: 0.0575 T12: 0.0013 REMARK 3 T13: -0.0087 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0342 L22: 1.3635 REMARK 3 L33: 2.5465 L12: 0.1443 REMARK 3 L13: 0.2712 L23: -1.0431 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.0170 S13: -0.0990 REMARK 3 S21: -0.0204 S22: -0.0792 S23: -0.0649 REMARK 3 S31: 0.0990 S32: 0.1402 S33: 0.0311 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.7922 6.8848 87.6866 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.0725 REMARK 3 T33: 0.0980 T12: 0.0204 REMARK 3 T13: -0.0225 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 7.0219 L22: 5.1828 REMARK 3 L33: 4.7328 L12: 4.9871 REMARK 3 L13: -5.4775 L23: -3.3298 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.3011 S13: -0.3673 REMARK 3 S21: 0.0544 S22: -0.2587 S23: -0.4570 REMARK 3 S31: 0.5216 S32: 0.4111 S33: 0.1170 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4490 10.4580 81.5430 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0459 REMARK 3 T33: 0.0400 T12: 0.0012 REMARK 3 T13: -0.0077 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.0885 L22: 6.8374 REMARK 3 L33: 4.8319 L12: -2.9114 REMARK 3 L13: -1.9275 L23: 2.0840 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.1020 S13: 0.0396 REMARK 3 S21: -0.2958 S22: 0.0831 S23: -0.1257 REMARK 3 S31: 0.1771 S32: -0.0168 S33: -0.0098 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.2298 17.1725 84.6811 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0579 REMARK 3 T33: 0.0567 T12: 0.0156 REMARK 3 T13: -0.0015 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.1977 L22: 1.2525 REMARK 3 L33: 4.0604 L12: 0.6762 REMARK 3 L13: 0.2087 L23: -0.2352 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.0233 S13: 0.0443 REMARK 3 S21: -0.0317 S22: 0.0186 S23: 0.0227 REMARK 3 S31: -0.1203 S32: -0.2235 S33: -0.0394 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1373 9.0264 90.7330 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0685 REMARK 3 T33: 0.0683 T12: -0.0014 REMARK 3 T13: -0.0270 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 4.1501 L22: 3.5157 REMARK 3 L33: 8.1448 L12: -1.3385 REMARK 3 L13: -3.2673 L23: 2.4459 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.2972 S13: -0.0981 REMARK 3 S21: 0.0118 S22: 0.1093 S23: 0.0160 REMARK 3 S31: 0.2669 S32: 0.0459 S33: 0.0410 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 201 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.4355 22.4738 88.6636 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.0528 REMARK 3 T33: 0.1065 T12: -0.0039 REMARK 3 T13: -0.0181 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.5774 L22: 5.9175 REMARK 3 L33: 3.2926 L12: -0.4949 REMARK 3 L13: 0.1747 L23: -0.1988 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: 0.1739 S13: 0.4118 REMARK 3 S21: -0.1836 S22: 0.0236 S23: -0.0583 REMARK 3 S31: -0.2888 S32: 0.0698 S33: -0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ELQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 14.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Z8J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM CITRATE, 5% PEG400, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.12000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 HIS A 37 REMARK 465 GLY A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 VAL A 135 REMARK 465 ARG P 200 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 HIS B 37 REMARK 465 GLY B 38 REMARK 465 GLY B 39 REMARK 465 VAL B 135 REMARK 465 ARG C 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 391 O HOH B 401 2.08 REMARK 500 OE1 GLU B 127 O HOH B 301 2.10 REMARK 500 O HOH B 313 O HOH B 383 2.14 REMARK 500 O PRO B 86 O HOH B 302 2.17 REMARK 500 O HOH C 405 O HOH C 410 2.18 REMARK 500 O HOH A 405 O HOH P 318 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 345 O HOH P 301 2567 1.97 REMARK 500 O HOH A 390 O HOH B 391 4854 2.04 REMARK 500 O HOH A 344 O HOH B 309 2567 2.09 REMARK 500 O HOH A 304 O HOH B 355 2567 2.11 REMARK 500 O HOH A 321 O HOH B 390 4854 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 -169.86 -118.83 REMARK 500 LYS A 126 -34.18 -141.00 REMARK 500 LYS B 126 -36.59 -139.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z8J RELATED DB: PDB REMARK 900 SNX27 PDZ DOMAIN BOUND TO RELATED PDZ PEPTIDE MOTIF REMARK 900 RELATED ID: 5EM9 RELATED DB: PDB REMARK 900 RELATED ID: 5EMA RELATED DB: PDB REMARK 900 RELATED ID: 5EMB RELATED DB: PDB DBREF 5ELQ A 41 135 UNP Q8K4V4 SNX27_RAT 39 133 DBREF 5ELQ P 200 207 PDB 5ELQ 5ELQ 200 207 DBREF 5ELQ B 41 135 UNP Q8K4V4 SNX27_RAT 39 133 DBREF 5ELQ C 200 207 PDB 5ELQ 5ELQ 200 207 SEQADV 5ELQ GLY A 35 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ SER A 36 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ HIS A 37 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ GLY A 38 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ GLY A 39 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ SER A 40 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ GLY B 35 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ SER B 36 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ HIS B 37 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ GLY B 38 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ GLY B 39 UNP Q8K4V4 EXPRESSION TAG SEQADV 5ELQ SER B 40 UNP Q8K4V4 EXPRESSION TAG SEQRES 1 A 101 GLY SER HIS GLY GLY SER PRO ARG VAL VAL ARG ILE VAL SEQRES 2 A 101 LYS SER GLU SER GLY TYR GLY PHE ASN VAL ARG GLY GLN SEQRES 3 A 101 VAL SER GLU GLY GLY GLN LEU ARG SER ILE ASN GLY GLU SEQRES 4 A 101 LEU TYR ALA PRO LEU GLN HIS VAL SER ALA VAL LEU PRO SEQRES 5 A 101 GLY GLY ALA ALA ASP ARG ALA GLY VAL ARG LYS GLY ASP SEQRES 6 A 101 ARG ILE LEU GLU VAL ASN GLY VAL ASN VAL GLU GLY ALA SEQRES 7 A 101 THR HIS LYS GLN VAL VAL ASP LEU ILE ARG ALA GLY GLU SEQRES 8 A 101 LYS GLU LEU ILE LEU THR VAL LEU SER VAL SEQRES 1 P 8 ARG GLU ASP GLN GLU THR ALA VAL SEQRES 1 B 101 GLY SER HIS GLY GLY SER PRO ARG VAL VAL ARG ILE VAL SEQRES 2 B 101 LYS SER GLU SER GLY TYR GLY PHE ASN VAL ARG GLY GLN SEQRES 3 B 101 VAL SER GLU GLY GLY GLN LEU ARG SER ILE ASN GLY GLU SEQRES 4 B 101 LEU TYR ALA PRO LEU GLN HIS VAL SER ALA VAL LEU PRO SEQRES 5 B 101 GLY GLY ALA ALA ASP ARG ALA GLY VAL ARG LYS GLY ASP SEQRES 6 B 101 ARG ILE LEU GLU VAL ASN GLY VAL ASN VAL GLU GLY ALA SEQRES 7 B 101 THR HIS LYS GLN VAL VAL ASP LEU ILE ARG ALA GLY GLU SEQRES 8 B 101 LYS GLU LEU ILE LEU THR VAL LEU SER VAL SEQRES 1 C 8 ARG GLU ASP GLN GLU THR ALA VAL HET PG4 A 201 30 HET PG4 B 201 30 HET PG4 B 202 30 HET PG4 C 301 30 HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 5 PG4 4(C8 H18 O5) FORMUL 9 HOH *262(H2 O) HELIX 1 AA1 GLY A 88 GLY A 94 1 7 HELIX 2 AA2 THR A 113 ARG A 122 1 10 HELIX 3 AA3 GLY B 88 GLY B 94 1 7 HELIX 4 AA4 THR B 113 ARG B 122 1 10 SHEET 1 AA1 4 ARG A 42 VAL A 47 0 SHEET 2 AA1 4 GLU A 127 LEU A 133 -1 O LEU A 128 N ILE A 46 SHEET 3 AA1 4 ARG A 100 VAL A 104 -1 N ARG A 100 O LEU A 133 SHEET 4 AA1 4 VAL A 107 ASN A 108 -1 O VAL A 107 N VAL A 104 SHEET 1 AA2 3 HIS A 80 VAL A 84 0 SHEET 2 AA2 3 PHE A 55 GLN A 60 -1 N ARG A 58 O HIS A 80 SHEET 3 AA2 3 ASP P 202 ALA P 206 -1 O THR P 205 N VAL A 57 SHEET 1 AA3 2 ARG A 68 ILE A 70 0 SHEET 2 AA3 2 GLU A 73 TYR A 75 -1 O GLU A 73 N ILE A 70 SHEET 1 AA4 4 PRO B 41 VAL B 47 0 SHEET 2 AA4 4 GLU B 127 LEU B 133 -1 O LEU B 128 N ILE B 46 SHEET 3 AA4 4 ARG B 100 VAL B 104 -1 N ARG B 100 O LEU B 133 SHEET 4 AA4 4 VAL B 107 ASN B 108 -1 O VAL B 107 N VAL B 104 SHEET 1 AA5 3 HIS B 80 VAL B 84 0 SHEET 2 AA5 3 PHE B 55 GLN B 60 -1 N ARG B 58 O HIS B 80 SHEET 3 AA5 3 ASP C 202 ALA C 206 -1 O THR C 205 N VAL B 57 SHEET 1 AA6 2 ARG B 68 ILE B 70 0 SHEET 2 AA6 2 GLU B 73 TYR B 75 -1 O GLU B 73 N ILE B 70 SITE 1 AC1 10 GLU A 110 ALA A 112 GLN A 116 HOH A 304 SITE 2 AC1 10 HOH A 321 HOH A 323 HOH A 360 VAL B 61 SITE 3 AC1 10 PG4 B 201 HOH B 392 SITE 1 AC2 9 GLN A 66 PG4 A 201 GLU B 63 ASN B 108 SITE 2 AC2 9 GLU B 110 GLY B 111 ALA B 112 GLN B 116 SITE 3 AC2 9 HOH B 384 SITE 1 AC3 5 LEU A 85 HOH A 374 ASN B 105 GLU B 127 SITE 2 AC3 5 HOH P 309 SITE 1 AC4 1 HOH C 417 CRYST1 48.940 54.120 74.240 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020433 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013470 0.00000