HEADER TRANSFERASE/TRANSFERASE INHIBITOR 05-NOV-15 5ELZ TITLE STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH A TITLE 2 PANTOTHENATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II PANTOTHENATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PANK-II,PANTOTHENIC ACID KINASE; COMPND 5 EC: 2.7.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: COAW, MW2054; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-TR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PANTOTHENATE KINASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.MOTTAGHI,S.J.HUGHES,W.TEMPEL,B.HONG,H.PARK,STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (SGC) REVDAT 3 27-SEP-23 5ELZ 1 REMARK LINK REVDAT 2 09-NOV-16 5ELZ 1 JRNL REVDAT 1 10-AUG-16 5ELZ 0 JRNL AUTH S.J.HUGHES,L.BARNARD,K.MOTTAGHI,W.TEMPEL,T.ANTOSHCHENKO, JRNL AUTH 2 B.S.HONG,A.ALLALI-HASSANI,D.SMIL,M.VEDADI,E.STRAUSS,H.W.PARK JRNL TITL DISCOVERY OF POTENT PANTOTHENAMIDE INHIBITORS OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS PANTOTHENATE KINASE THROUGH A MINIMAL JRNL TITL 3 SAR STUDY: INHIBITION IS DUE TO TRAPPING OF THE PRODUCT. JRNL REF ACS INFECT DIS. V. 2 627 2016 JRNL REFN ESSN 2373-8227 JRNL PMID 27759386 JRNL DOI 10.1021/ACSINFECDIS.6B00090 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2103 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.476 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2239 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2117 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3049 ; 1.255 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4854 ; 0.755 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.459 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;38.821 ;24.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;11.081 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 537 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1098 ; 0.925 ; 1.258 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1097 ; 0.925 ; 1.256 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1374 ; 1.606 ; 1.881 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2881 14.3542 -3.5316 REMARK 3 T TENSOR REMARK 3 T11: 0.0209 T22: 0.0379 REMARK 3 T33: 0.0422 T12: 0.0013 REMARK 3 T13: -0.0017 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.2047 L22: 2.4390 REMARK 3 L33: 0.7962 L12: -0.2599 REMARK 3 L13: -0.1082 L23: 0.2347 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.0112 S13: 0.2001 REMARK 3 S21: -0.1377 S22: -0.1125 S23: 0.0546 REMARK 3 S31: -0.1048 S32: -0.0149 S33: 0.0479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ELZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27062 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4M7X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 UL PROTEIN + 0.5 UL BUFFER THAT REMARK 280 CONTAINS 25% PEG3350, 0.2 M MGCL2, 0.1 M TRIS HCL, PH 8.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.48350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.38550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.48350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.38550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.93500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.48350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.38550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.93500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.48350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.38550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 150 O HOH A 401 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 67.95 -110.95 REMARK 500 LYS A 161 -111.43 54.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 675 DISTANCE = 6.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 301 O2B REMARK 620 2 3V9 A 303 O2 96.7 REMARK 620 3 HOH A 424 O 92.3 170.4 REMARK 620 4 HOH A 435 O 175.3 81.1 89.6 REMARK 620 5 HOH A 487 O 90.2 91.4 85.5 85.7 REMARK 620 6 HOH A 513 O 96.5 91.8 90.3 87.8 172.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3V9 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M7X RELATED DB: PDB REMARK 900 RELATED ID: 4M7Y RELATED DB: PDB DBREF 5ELZ A 1 267 UNP Q8NVG0 COAW_STAAW 1 267 SEQADV 5ELZ HIS A 268 UNP Q8NVG0 EXPRESSION TAG SEQADV 5ELZ HIS A 269 UNP Q8NVG0 EXPRESSION TAG SEQADV 5ELZ HIS A 270 UNP Q8NVG0 EXPRESSION TAG SEQADV 5ELZ HIS A 271 UNP Q8NVG0 EXPRESSION TAG SEQADV 5ELZ HIS A 272 UNP Q8NVG0 EXPRESSION TAG SEQADV 5ELZ HIS A 273 UNP Q8NVG0 EXPRESSION TAG SEQRES 1 A 273 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 A 273 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 A 273 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 A 273 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 A 273 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 A 273 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 A 273 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 A 273 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 A 273 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 A 273 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 A 273 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 A 273 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 A 273 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 A 273 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 A 273 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 A 273 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 A 273 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 A 273 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 A 273 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 A 273 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 A 273 GLY ALA LEU TYR LEU GLU LYS HIS HIS HIS HIS HIS HIS HET ADP A 301 27 HET MG A 302 1 HET 3V9 A 303 29 HET UNX A 304 1 HET UNX A 305 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM 3V9 N-(1,3-BENZODIOXOL-5-YLMETHYL)-N~3~-[(2R)-2-HYDROXY-3, HETNAM 2 3V9 3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 3V9 C17 H25 N2 O9 P FORMUL 5 UNX 2(X) FORMUL 7 HOH *275(H2 O) HELIX 1 AA1 ASN A 31 GLN A 41 1 11 HELIX 2 AA2 ASN A 53 ASN A 60 1 8 HELIX 3 AA3 VAL A 69 GLN A 85 1 17 HELIX 4 AA4 GLY A 120 GLN A 133 1 14 HELIX 5 AA5 ASP A 136 GLN A 145 1 10 HELIX 6 AA6 VAL A 156 LYS A 161 1 6 HELIX 7 AA7 HIS A 178 HIS A 182 5 5 HELIX 8 AA8 THR A 188 PHE A 215 1 28 HELIX 9 AA9 GLY A 224 HIS A 228 5 5 HELIX 10 AB1 ASN A 230 ARG A 244 1 15 HELIX 11 AB2 ASN A 253 ALA A 255 5 3 HELIX 12 AB3 PHE A 256 HIS A 270 1 15 SHEET 1 AA1 5 GLN A 21 LEU A 28 0 SHEET 2 AA1 5 LEU A 11 GLN A 18 -1 N ILE A 12 O GLU A 27 SHEET 3 AA1 5 VAL A 3 ALA A 7 -1 N GLY A 4 O VAL A 15 SHEET 4 AA1 5 LEU A 47 THR A 50 1 O CYS A 48 N ILE A 5 SHEET 5 AA1 5 ALA A 65 ILE A 67 1 O GLN A 66 N LEU A 49 SHEET 1 AA2 5 GLN A 111 ILE A 117 0 SHEET 2 AA2 5 THR A 101 PHE A 106 -1 N LEU A 103 O GLY A 115 SHEET 3 AA2 5 TYR A 92 VAL A 97 -1 N TYR A 92 O PHE A 106 SHEET 4 AA2 5 ASN A 219 ILE A 223 1 O VAL A 221 N ILE A 93 SHEET 5 AA2 5 LYS A 247 TYR A 250 1 O TYR A 249 N TYR A 222 SHEET 1 AA3 2 LEU A 154 LYS A 155 0 SHEET 2 AA3 2 THR A 172 ALA A 174 -1 O ALA A 173 N LEU A 154 LINK O2B ADP A 301 MG MG A 302 1555 1555 1.99 LINK MG MG A 302 O2 3V9 A 303 1555 1555 1.97 LINK MG MG A 302 O HOH A 424 1555 1555 2.05 LINK MG MG A 302 O HOH A 435 1555 1555 2.16 LINK MG MG A 302 O HOH A 487 1555 1555 2.15 LINK MG MG A 302 O HOH A 513 1555 1555 2.09 SITE 1 AC1 23 GLY A 8 GLY A 9 THR A 10 LEU A 11 SITE 2 AC1 23 LYS A 13 LEU A 28 GLY A 98 THR A 99 SITE 3 AC1 23 GLY A 121 GLY A 122 GLN A 125 TYR A 137 SITE 4 AC1 23 GLY A 224 SER A 225 SER A 226 MG A 302 SITE 5 AC1 23 3V9 A 303 HOH A 424 HOH A 456 HOH A 487 SITE 6 AC1 23 HOH A 508 HOH A 513 HOH A 564 SITE 1 AC2 6 ADP A 301 3V9 A 303 HOH A 424 HOH A 435 SITE 2 AC2 6 HOH A 487 HOH A 513 SITE 1 AC3 23 GLY A 9 GLU A 70 THR A 99 GLY A 100 SITE 2 AC3 23 THR A 101 SER A 102 ARG A 113 GLY A 116 SITE 3 AC3 23 ILE A 117 THR A 172 ALA A 173 GLU A 202 SITE 4 AC3 23 THR A 206 TYR A 240 ADP A 301 MG A 302 SITE 5 AC3 23 HOH A 433 HOH A 435 HOH A 450 HOH A 481 SITE 6 AC3 23 HOH A 487 HOH A 513 HOH A 584 CRYST1 56.967 136.771 73.870 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013537 0.00000