data_5EMF # _entry.id 5EMF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5EMF pdb_00005emf 10.2210/pdb5emf/pdb WWPDB D_1000214887 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-01-13 2 'Structure model' 1 1 2016-03-09 3 'Structure model' 1 2 2017-05-17 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 2 0 2023-11-15 6 'Structure model' 2 1 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' atom_site 3 5 'Structure model' atom_site_anisotrop 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' struct_conn 8 6 'Structure model' pdbx_entry_details 9 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_atom_site.auth_atom_id' 3 5 'Structure model' '_atom_site.label_atom_id' 4 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 5 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EMF _pdbx_database_status.recvd_initial_deposition_date 2015-11-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'A similar duplex of RNA and PNA.' _pdbx_database_related.db_id 5EME _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kiliszek, A.' 1 'Banaszak, K.' 2 'Dauter, Z.' 3 'Rypniewski, W.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 1937 _citation.page_last 1943 _citation.title ;The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkv1513 _citation.pdbx_database_id_PubMed 26717983 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Banaszak, K.' 2 ? primary 'Dauter, Z.' 3 ? primary 'Rypniewski, W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3') ; 2518.537 1 ? ? ? ? 2 polymer syn 'antisense PNA p(GCAGCAGC)' 2204.135 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 114 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCUGCUGC GCUGCUGC A ? 2 'peptide nucleic acid' no yes '(GPN)(CPN)(APN)(GPN)(CPN)(APN)(GPN)(CPN)' XXXXXXXX B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 C n 2 1 GPN n 2 2 CPN n 2 3 APN n 2 4 GPN n 2 5 CPN n 2 6 APN n 2 7 GPN n 2 8 CPN n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 8 'Homo sapiens' ? 9606 'This sequence occurs naturally in humans.' 2 1 sample 1 8 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight APN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE ? 'C11 H16 N7 O3 1' 294.290 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE ? 'C11 H16 N7 O4 1' 310.289 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 2 1 GPN 1 101 1 GPN GPN B . n B 2 2 CPN 2 102 2 CPN CPN B . n B 2 3 APN 3 103 3 APN APN B . n B 2 4 GPN 4 104 4 GPN GPN B . n B 2 5 CPN 5 105 5 CPN CPN B . n B 2 6 APN 6 106 6 APN APN B . n B 2 7 GPN 7 107 7 GPN GPN B . n B 2 8 CPN 8 108 8 CPN CPN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 101 1 CL CL A . D 3 CL 1 201 2 CL CL B . E 4 HOH 1 201 75 HOH HOH A . E 4 HOH 2 202 61 HOH HOH A . E 4 HOH 3 203 31 HOH HOH A . E 4 HOH 4 204 18 HOH HOH A . E 4 HOH 5 205 12 HOH HOH A . E 4 HOH 6 206 102 HOH HOH A . E 4 HOH 7 207 15 HOH HOH A . E 4 HOH 8 208 23 HOH HOH A . E 4 HOH 9 209 84 HOH HOH A . E 4 HOH 10 210 2 HOH HOH A . E 4 HOH 11 211 62 HOH HOH A . E 4 HOH 12 212 81 HOH HOH A . E 4 HOH 13 213 34 HOH HOH A . E 4 HOH 14 214 111 HOH HOH A . E 4 HOH 15 215 20 HOH HOH A . E 4 HOH 16 216 24 HOH HOH A . E 4 HOH 17 217 74 HOH HOH A . E 4 HOH 18 218 87 HOH HOH A . E 4 HOH 19 219 55 HOH HOH A . E 4 HOH 20 220 91 HOH HOH A . E 4 HOH 21 221 40 HOH HOH A . E 4 HOH 22 222 49 HOH HOH A . E 4 HOH 23 223 37 HOH HOH A . E 4 HOH 24 224 45 HOH HOH A . E 4 HOH 25 225 33 HOH HOH A . E 4 HOH 26 226 9 HOH HOH A . E 4 HOH 27 227 86 HOH HOH A . E 4 HOH 28 228 97 HOH HOH A . E 4 HOH 29 229 6 HOH HOH A . E 4 HOH 30 230 5 HOH HOH A . E 4 HOH 31 231 29 HOH HOH A . E 4 HOH 32 232 4 HOH HOH A . E 4 HOH 33 233 104 HOH HOH A . E 4 HOH 34 234 1 HOH HOH A . E 4 HOH 35 235 22 HOH HOH A . E 4 HOH 36 236 47 HOH HOH A . E 4 HOH 37 237 53 HOH HOH A . E 4 HOH 38 238 50 HOH HOH A . E 4 HOH 39 239 64 HOH HOH A . E 4 HOH 40 240 54 HOH HOH A . E 4 HOH 41 241 105 HOH HOH A . E 4 HOH 42 242 42 HOH HOH A . E 4 HOH 43 243 92 HOH HOH A . E 4 HOH 44 244 16 HOH HOH A . E 4 HOH 45 245 17 HOH HOH A . E 4 HOH 46 246 95 HOH HOH A . E 4 HOH 47 247 59 HOH HOH A . E 4 HOH 48 248 21 HOH HOH A . E 4 HOH 49 249 46 HOH HOH A . E 4 HOH 50 250 48 HOH HOH A . E 4 HOH 51 251 80 HOH HOH A . E 4 HOH 52 252 103 HOH HOH A . E 4 HOH 53 253 41 HOH HOH A . E 4 HOH 54 254 88 HOH HOH A . E 4 HOH 55 255 25 HOH HOH A . E 4 HOH 56 256 76 HOH HOH A . E 4 HOH 57 257 93 HOH HOH A . E 4 HOH 58 258 68 HOH HOH A . E 4 HOH 59 259 36 HOH HOH A . E 4 HOH 60 260 35 HOH HOH A . E 4 HOH 61 261 39 HOH HOH A . E 4 HOH 62 262 52 HOH HOH A . E 4 HOH 63 263 32 HOH HOH A . E 4 HOH 64 264 98 HOH HOH A . E 4 HOH 65 265 106 HOH HOH A . E 4 HOH 66 266 85 HOH HOH A . E 4 HOH 67 267 99 HOH HOH A . E 4 HOH 68 268 90 HOH HOH A . E 4 HOH 69 269 96 HOH HOH A . E 4 HOH 70 270 78 HOH HOH A . F 4 HOH 1 301 19 HOH HOH B . F 4 HOH 2 302 109 HOH HOH B . F 4 HOH 3 303 14 HOH HOH B . F 4 HOH 4 304 43 HOH HOH B . F 4 HOH 5 305 26 HOH HOH B . F 4 HOH 6 306 108 HOH HOH B . F 4 HOH 7 307 30 HOH HOH B . F 4 HOH 8 308 13 HOH HOH B . F 4 HOH 9 309 89 HOH HOH B . F 4 HOH 10 310 73 HOH HOH B . F 4 HOH 11 311 10 HOH HOH B . F 4 HOH 12 312 56 HOH HOH B . F 4 HOH 13 313 3 HOH HOH B . F 4 HOH 14 314 101 HOH HOH B . F 4 HOH 15 315 11 HOH HOH B . F 4 HOH 16 316 114 HOH HOH B . F 4 HOH 17 317 38 HOH HOH B . F 4 HOH 18 318 44 HOH HOH B . F 4 HOH 19 319 67 HOH HOH B . F 4 HOH 20 320 8 HOH HOH B . F 4 HOH 21 321 72 HOH HOH B . F 4 HOH 22 322 51 HOH HOH B . F 4 HOH 23 323 7 HOH HOH B . F 4 HOH 24 324 65 HOH HOH B . F 4 HOH 25 325 82 HOH HOH B . F 4 HOH 26 326 63 HOH HOH B . F 4 HOH 27 327 27 HOH HOH B . F 4 HOH 28 328 57 HOH HOH B . F 4 HOH 29 329 100 HOH HOH B . F 4 HOH 30 330 107 HOH HOH B . F 4 HOH 31 331 113 HOH HOH B . F 4 HOH 32 332 28 HOH HOH B . F 4 HOH 33 333 94 HOH HOH B . F 4 HOH 34 334 79 HOH HOH B . F 4 HOH 35 335 77 HOH HOH B . F 4 HOH 36 336 70 HOH HOH B . F 4 HOH 37 337 71 HOH HOH B . F 4 HOH 38 338 66 HOH HOH B . F 4 HOH 39 339 110 HOH HOH B . F 4 HOH 40 340 58 HOH HOH B . F 4 HOH 41 341 69 HOH HOH B . F 4 HOH 42 342 112 HOH HOH B . F 4 HOH 43 343 83 HOH HOH B . F 4 HOH 44 344 60 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0124 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5EMF _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.110 _cell.length_a_esd ? _cell.length_b 35.110 _cell.length_b_esd ? _cell.length_c 69.114 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EMF _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.88 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '200mM KCl, TRIS, PEG4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-02-11 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.968681 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.968681 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 16.135 _reflns.entry_id 5EMF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.14 _reflns.d_resolution_low 30.41 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18549 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.13 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.14 _reflns_shell.d_res_low 1.21 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.00 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 90.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.89 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.40 _refine.aniso_B[1][2] -0.20 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.40 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 1.31 _refine.B_iso_max ? _refine.B_iso_mean 14.248 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.985 _refine.correlation_coeff_Fo_to_Fc_free 0.977 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5EMF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.14 _refine.ls_d_res_low 30.41 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17374 _refine.ls_number_reflns_R_free 1109 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.14 _refine.ls_percent_reflns_R_free 6.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.12361 _refine.ls_R_factor_R_free 0.15296 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.12171 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.030 _refine.pdbx_overall_ESU_R_Free 0.031 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.190 _refine.overall_SU_ML 0.024 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 166 _refine_hist.pdbx_number_atoms_ligand 160 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 440 _refine_hist.d_res_high 1.14 _refine_hist.d_res_low 30.41 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.025 0.015 442 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 253 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.587 2.141 648 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.818 3.000 563 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.115 0.200 41 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.025 0.020 359 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.012 0.020 130 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.896 1.218 442 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.894 1.218 443 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.061 1.840 648 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 3.796 13.597 742 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 2.500 12.452 679 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 6.600 3.000 695 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 23.588 5.000 35 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 12.697 5.000 758 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.140 _refine_ls_shell.d_res_low 1.170 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_R_work 1142 _refine_ls_shell.percent_reflns_obs 89.21 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.277 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5EMF _struct.title 'Crystal structure of RNA r(GCUGCUGC) with antisense PNA p(GCAGCAGC)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EMF _struct_keywords.text 'CUG repeats, RNA/PNA duplex, antisense PNA, myotonic dystrophy type 1, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5EMF 5EMF ? 1 ? 1 2 PDB 5EMF 5EMF ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EMF A 1 ? 8 ? 5EMF 1 ? 8 ? 1 8 2 2 5EMF B 1 ? 8 ? 5EMF 101 ? 108 ? 101 108 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1000 ? 1 MORE -10 ? 1 'SSA (A^2)' 3180 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GPN 1 C ? ? ? 1_555 B CPN 2 N ? ? B GPN 101 B CPN 102 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? B CPN 2 C ? ? ? 1_555 B APN 3 N ? ? B CPN 102 B APN 103 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale both ? B APN 3 C ? ? ? 1_555 B GPN 4 N ? ? B APN 103 B GPN 104 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? B GPN 4 C A ? ? 1_555 B CPN 5 N A ? B GPN 104 B CPN 105 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? B GPN 4 C B ? ? 1_555 B CPN 5 N B ? B GPN 104 B CPN 105 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B CPN 5 C A ? ? 1_555 B APN 6 N A ? B CPN 105 B APN 106 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? B CPN 5 C B ? ? 1_555 B APN 6 N B ? B CPN 105 B APN 106 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? B APN 6 C A ? ? 1_555 B GPN 7 N A ? B APN 106 B GPN 107 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? B APN 6 C B ? ? 1_555 B GPN 7 N B ? B APN 106 B GPN 107 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale10 covale both ? B GPN 7 C ? ? ? 1_555 B CPN 8 N ? ? B GPN 107 B CPN 108 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 GPN B 1 ? . . . . GPN B 101 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 2 CPN B 2 ? . . . . CPN B 102 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 3 APN B 3 ? . . . . APN B 103 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 4 GPN B 4 ? . . . . GPN B 104 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 5 GPN B 4 A . . . . GPN B 104 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 6 GPN B 4 B . . . . GPN B 104 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 7 CPN B 5 A . . . . CPN B 105 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 8 CPN B 5 B . . . . CPN B 105 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 9 APN B 6 A . . . . APN B 106 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 10 APN B 6 B . . . . APN B 106 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 11 GPN B 7 ? . . . . GPN B 107 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 12 GPN B 7 A . . . . GPN B 107 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 13 GPN B 7 B . . . . GPN B 107 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 14 CPN B 8 ? . . . . CPN B 108 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 101 ? 6 'binding site for residue CL A 101' AC2 Software B CL 201 ? 1 'binding site for residue CL B 201' AC3 Software B GPN 101 ? 18 'binding site for residues GPN B 101 and CPN B 102' AC4 Software B CPN 102 ? 15 'binding site for residues CPN B 102 and APN B 103' AC5 Software B APN 103 ? 17 'binding site for residues APN B 103 and GPN B 104' AC6 Software B GPN 104 ? 16 'binding site for residues GPN B 104 and CPN B 105' AC7 Software B CPN 105 ? 13 'binding site for residues CPN B 105 and APN B 106' AC8 Software B APN 106 ? 18 'binding site for residues APN B 106 and GPN B 107' AC9 Software B GPN 107 ? 21 'binding site for residues GPN B 107 and CPN B 108' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 C A 2 ? C A 2 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 206 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 260 . ? 4_655 ? 4 AC1 6 GPN B 1 ? GPN B 101 . ? 6_555 ? 5 AC1 6 HOH F . ? HOH B 313 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH B 316 . ? 1_555 ? 7 AC2 1 GPN B 7 ? GPN B 107 . ? 1_555 ? 8 AC3 18 G A 1 ? G A 1 . ? 6_555 ? 9 AC3 18 C A 2 ? C A 2 . ? 6_555 ? 10 AC3 18 G A 7 ? G A 7 . ? 1_555 ? 11 AC3 18 C A 8 ? C A 8 . ? 4_555 ? 12 AC3 18 C A 8 ? C A 8 . ? 1_555 ? 13 AC3 18 CL C . ? CL A 101 . ? 6_555 ? 14 AC3 18 HOH E . ? HOH A 234 . ? 4_555 ? 15 AC3 18 APN B 3 ? APN B 103 . ? 1_555 ? 16 AC3 18 GPN B 7 ? GPN B 107 . ? 1_455 ? 17 AC3 18 CPN B 8 ? CPN B 108 . ? 6_555 ? 18 AC3 18 HOH F . ? HOH B 308 . ? 1_555 ? 19 AC3 18 HOH F . ? HOH B 317 . ? 1_555 ? 20 AC3 18 HOH F . ? HOH B 321 . ? 1_555 ? 21 AC3 18 HOH F . ? HOH B 325 . ? 1_555 ? 22 AC3 18 HOH F . ? HOH B 326 . ? 1_555 ? 23 AC3 18 HOH F . ? HOH B 327 . ? 1_555 ? 24 AC3 18 HOH F . ? HOH B 328 . ? 1_555 ? 25 AC3 18 HOH F . ? HOH B 332 . ? 1_555 ? 26 AC4 15 G A 1 ? G A 1 . ? 6_555 ? 27 AC4 15 U A 6 ? U A 6 . ? 1_555 ? 28 AC4 15 G A 7 ? G A 7 . ? 1_555 ? 29 AC4 15 C A 8 ? C A 8 . ? 1_555 ? 30 AC4 15 HOH E . ? HOH A 234 . ? 4_555 ? 31 AC4 15 GPN B 1 ? GPN B 101 . ? 1_555 ? 32 AC4 15 GPN B 4 ? GPN B 104 . ? 1_555 ? 33 AC4 15 CPN B 8 ? CPN B 108 . ? 6_555 ? 34 AC4 15 HOH F . ? HOH B 308 . ? 1_555 ? 35 AC4 15 HOH F . ? HOH B 310 . ? 1_555 ? 36 AC4 15 HOH F . ? HOH B 319 . ? 1_555 ? 37 AC4 15 HOH F . ? HOH B 320 . ? 1_555 ? 38 AC4 15 HOH F . ? HOH B 324 . ? 1_555 ? 39 AC4 15 HOH F . ? HOH B 328 . ? 1_555 ? 40 AC4 15 HOH F . ? HOH B 332 . ? 1_555 ? 41 AC5 17 G A 1 ? G A 1 . ? 6_555 ? 42 AC5 17 G A 4 ? G A 4 . ? 4_545 ? 43 AC5 17 C A 5 ? C A 5 . ? 1_555 ? 44 AC5 17 C A 5 ? C A 5 . ? 4_545 ? 45 AC5 17 U A 6 ? U A 6 . ? 1_555 ? 46 AC5 17 G A 7 ? G A 7 . ? 1_555 ? 47 AC5 17 CPN B 2 ? CPN B 102 . ? 1_555 ? 48 AC5 17 CPN B 5 ? CPN B 105 . ? 1_555 ? 49 AC5 17 CPN B 8 ? CPN B 108 . ? 6_555 ? 50 AC5 17 HOH F . ? HOH B 302 . ? 1_555 ? 51 AC5 17 HOH F . ? HOH B 303 . ? 1_555 ? 52 AC5 17 HOH F . ? HOH B 306 . ? 1_555 ? 53 AC5 17 HOH F . ? HOH B 307 . ? 1_555 ? 54 AC5 17 HOH F . ? HOH B 310 . ? 1_555 ? 55 AC5 17 HOH F . ? HOH B 319 . ? 1_555 ? 56 AC5 17 HOH F . ? HOH B 320 . ? 1_555 ? 57 AC5 17 HOH F . ? HOH B 324 . ? 1_555 ? 58 AC6 16 G A 4 ? G A 4 . ? 4_545 ? 59 AC6 16 G A 4 ? G A 4 . ? 1_555 ? 60 AC6 16 C A 5 ? C A 5 . ? 4_545 ? 61 AC6 16 C A 5 ? C A 5 . ? 1_555 ? 62 AC6 16 U A 6 ? U A 6 . ? 1_555 ? 63 AC6 16 APN B 3 ? APN B 103 . ? 1_555 ? 64 AC6 16 APN B 6 ? APN B 106 . ? 1_555 ? 65 AC6 16 HOH F . ? HOH B 301 . ? 1_555 ? 66 AC6 16 HOH F . ? HOH B 302 . ? 1_555 ? 67 AC6 16 HOH F . ? HOH B 303 . ? 1_555 ? 68 AC6 16 HOH F . ? HOH B 304 . ? 1_555 ? 69 AC6 16 HOH F . ? HOH B 306 . ? 1_555 ? 70 AC6 16 HOH F . ? HOH B 307 . ? 1_555 ? 71 AC6 16 HOH F . ? HOH B 320 . ? 1_555 ? 72 AC6 16 HOH F . ? HOH B 329 . ? 1_555 ? 73 AC6 16 HOH F . ? HOH B 330 . ? 1_555 ? 74 AC7 13 U A 3 ? U A 3 . ? 1_555 ? 75 AC7 13 G A 4 ? G A 4 . ? 1_555 ? 76 AC7 13 C A 5 ? C A 5 . ? 4_545 ? 77 AC7 13 C A 5 ? C A 5 . ? 1_555 ? 78 AC7 13 GPN B 4 ? GPN B 104 . ? 1_555 ? 79 AC7 13 GPN B 7 ? GPN B 107 . ? 1_555 ? 80 AC7 13 HOH F . ? HOH B 301 . ? 1_555 ? 81 AC7 13 HOH F . ? HOH B 304 . ? 1_555 ? 82 AC7 13 HOH F . ? HOH B 312 . ? 1_555 ? 83 AC7 13 HOH F . ? HOH B 315 . ? 1_555 ? 84 AC7 13 HOH F . ? HOH B 318 . ? 1_555 ? 85 AC7 13 HOH F . ? HOH B 329 . ? 1_555 ? 86 AC7 13 HOH F . ? HOH B 330 . ? 1_555 ? 87 AC8 18 C A 2 ? C A 2 . ? 1_555 ? 88 AC8 18 U A 3 ? U A 3 . ? 1_555 ? 89 AC8 18 G A 4 ? G A 4 . ? 1_555 ? 90 AC8 18 G A 7 ? G A 7 . ? 4_655 ? 91 AC8 18 C A 8 ? C A 8 . ? 4_655 ? 92 AC8 18 GPN B 1 ? GPN B 101 . ? 1_655 ? 93 AC8 18 CPN B 5 ? CPN B 105 . ? 1_555 ? 94 AC8 18 CPN B 8 ? CPN B 108 . ? 1_555 ? 95 AC8 18 CL D . ? CL B 201 . ? 1_555 ? 96 AC8 18 HOH F . ? HOH B 305 . ? 1_555 ? 97 AC8 18 HOH F . ? HOH B 309 . ? 1_555 ? 98 AC8 18 HOH F . ? HOH B 311 . ? 1_555 ? 99 AC8 18 HOH F . ? HOH B 312 . ? 1_555 ? 100 AC8 18 HOH F . ? HOH B 314 . ? 1_555 ? 101 AC8 18 HOH F . ? HOH B 315 . ? 1_555 ? 102 AC8 18 HOH F . ? HOH B 318 . ? 1_555 ? 103 AC8 18 HOH F . ? HOH B 323 . ? 1_555 ? 104 AC8 18 HOH F . ? HOH B 329 . ? 1_555 ? 105 AC9 21 G A 1 ? G A 1 . ? 1_555 ? 106 AC9 21 C A 2 ? C A 2 . ? 1_555 ? 107 AC9 21 U A 3 ? U A 3 . ? 1_555 ? 108 AC9 21 G A 7 ? G A 7 . ? 4_655 ? 109 AC9 21 C A 8 ? C A 8 . ? 4_655 ? 110 AC9 21 GPN B 1 ? GPN B 101 . ? 1_655 ? 111 AC9 21 CPN B 2 ? CPN B 102 . ? 6_555 ? 112 AC9 21 APN B 3 ? APN B 103 . ? 6_555 ? 113 AC9 21 APN B 6 ? APN B 106 . ? 1_555 ? 114 AC9 21 CL D . ? CL B 201 . ? 1_555 ? 115 AC9 21 HOH F . ? HOH B 305 . ? 1_555 ? 116 AC9 21 HOH F . ? HOH B 309 . ? 1_555 ? 117 AC9 21 HOH F . ? HOH B 311 . ? 1_555 ? 118 AC9 21 HOH F . ? HOH B 313 . ? 1_555 ? 119 AC9 21 HOH F . ? HOH B 314 . ? 1_555 ? 120 AC9 21 HOH F . ? HOH B 315 . ? 1_555 ? 121 AC9 21 HOH F . ? HOH B 316 . ? 1_555 ? 122 AC9 21 HOH F . ? HOH B 322 . ? 1_555 ? 123 AC9 21 HOH F . ? HOH B 323 . ? 1_555 ? 124 AC9 21 HOH F . ? HOH B 331 . ? 1_555 ? 125 AC9 21 HOH F . ? HOH B 339 . ? 6_555 ? # _pdbx_entry_details.entry_id 5EMF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 1 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id A _pdbx_validate_planes.rmsd 0.052 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 250 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal APN "C8'" C N N 1 APN "C7'" C N N 2 APN "O7'" O N N 3 APN "C5'" C N N 4 APN C C N N 5 APN O O N N 6 APN OXT O N N 7 APN "N4'" N N N 8 APN "C3'" C N N 9 APN "C2'" C N N 10 APN N N N N 11 APN N9 N Y N 12 APN C8 C Y N 13 APN N7 N Y N 14 APN C5 C Y N 15 APN C6 C Y N 16 APN N6 N N N 17 APN N1 N Y N 18 APN C2 C Y N 19 APN N3 N Y N 20 APN C4 C Y N 21 APN "H8'1" H N N 22 APN "H8'2" H N N 23 APN "H5'1" H N N 24 APN "H5'2" H N N 25 APN HXT H N N 26 APN "H3'1" H N N 27 APN "H3'2" H N N 28 APN "H2'1" H N N 29 APN "H2'2" H N N 30 APN H H N N 31 APN H2 H N N 32 APN H3 H N N 33 APN H8 H N N 34 APN HN61 H N N 35 APN HN62 H N N 36 APN H21 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CL CL CL N N 73 CPN "C8'" C N N 74 CPN "C7'" C N N 75 CPN "O7'" O N N 76 CPN "C5'" C N N 77 CPN C C N N 78 CPN O O N N 79 CPN OXT O N N 80 CPN "N4'" N N N 81 CPN "C3'" C N N 82 CPN "C2'" C N N 83 CPN N N N N 84 CPN N1 N N N 85 CPN C2 C N N 86 CPN N3 N N N 87 CPN C4 C N N 88 CPN C5 C N N 89 CPN C6 C N N 90 CPN O2 O N N 91 CPN N4 N N N 92 CPN "H8'1" H N N 93 CPN "H8'2" H N N 94 CPN "H5'1" H N N 95 CPN "H5'2" H N N 96 CPN HXT H N N 97 CPN "H3'1" H N N 98 CPN "H3'2" H N N 99 CPN "H2'1" H N N 100 CPN "H2'2" H N N 101 CPN H H N N 102 CPN H2 H N N 103 CPN H3 H N N 104 CPN H5 H N N 105 CPN H6 H N N 106 CPN HN41 H N N 107 CPN HN42 H N N 108 G OP3 O N N 109 G P P N N 110 G OP1 O N N 111 G OP2 O N N 112 G "O5'" O N N 113 G "C5'" C N N 114 G "C4'" C N R 115 G "O4'" O N N 116 G "C3'" C N S 117 G "O3'" O N N 118 G "C2'" C N R 119 G "O2'" O N N 120 G "C1'" C N R 121 G N9 N Y N 122 G C8 C Y N 123 G N7 N Y N 124 G C5 C Y N 125 G C6 C N N 126 G O6 O N N 127 G N1 N N N 128 G C2 C N N 129 G N2 N N N 130 G N3 N N N 131 G C4 C Y N 132 G HOP3 H N N 133 G HOP2 H N N 134 G "H5'" H N N 135 G "H5''" H N N 136 G "H4'" H N N 137 G "H3'" H N N 138 G "HO3'" H N N 139 G "H2'" H N N 140 G "HO2'" H N N 141 G "H1'" H N N 142 G H8 H N N 143 G H1 H N N 144 G H21 H N N 145 G H22 H N N 146 GPN "C8'" C N N 147 GPN "C7'" C N N 148 GPN "O7'" O N N 149 GPN "C5'" C N N 150 GPN C C N N 151 GPN O O N N 152 GPN OXT O N N 153 GPN "N4'" N N N 154 GPN "C3'" C N N 155 GPN "C2'" C N N 156 GPN N N N N 157 GPN N9 N Y N 158 GPN C8 C Y N 159 GPN N7 N Y N 160 GPN C5 C Y N 161 GPN C6 C N N 162 GPN O6 O N N 163 GPN N1 N N N 164 GPN C2 C N N 165 GPN N2 N N N 166 GPN N3 N N N 167 GPN C4 C Y N 168 GPN "H8'1" H N N 169 GPN "H8'2" H N N 170 GPN "H5'1" H N N 171 GPN "H5'2" H N N 172 GPN HXT H N N 173 GPN "H3'1" H N N 174 GPN "H3'2" H N N 175 GPN "H2'1" H N N 176 GPN "H2'2" H N N 177 GPN H H N N 178 GPN H2 H N N 179 GPN H3 H N N 180 GPN H8 H N N 181 GPN HN1 H N N 182 GPN HN21 H N N 183 GPN HN22 H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 U OP3 O N N 188 U P P N N 189 U OP1 O N N 190 U OP2 O N N 191 U "O5'" O N N 192 U "C5'" C N N 193 U "C4'" C N R 194 U "O4'" O N N 195 U "C3'" C N S 196 U "O3'" O N N 197 U "C2'" C N R 198 U "O2'" O N N 199 U "C1'" C N R 200 U N1 N N N 201 U C2 C N N 202 U O2 O N N 203 U N3 N N N 204 U C4 C N N 205 U O4 O N N 206 U C5 C N N 207 U C6 C N N 208 U HOP3 H N N 209 U HOP2 H N N 210 U "H5'" H N N 211 U "H5''" H N N 212 U "H4'" H N N 213 U "H3'" H N N 214 U "HO3'" H N N 215 U "H2'" H N N 216 U "HO2'" H N N 217 U "H1'" H N N 218 U H3 H N N 219 U H5 H N N 220 U H6 H N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal APN "C8'" "C7'" sing N N 1 APN "C8'" N9 sing N N 2 APN "C8'" "H8'1" sing N N 3 APN "C8'" "H8'2" sing N N 4 APN "C7'" "O7'" doub N N 5 APN "C7'" "N4'" sing N N 6 APN "C5'" C sing N N 7 APN "C5'" "N4'" sing N N 8 APN "C5'" "H5'1" sing N N 9 APN "C5'" "H5'2" sing N N 10 APN C O doub N N 11 APN C OXT sing N N 12 APN OXT HXT sing N N 13 APN "N4'" "C3'" sing N N 14 APN "C3'" "C2'" sing N N 15 APN "C3'" "H3'1" sing N N 16 APN "C3'" "H3'2" sing N N 17 APN "C2'" N sing N N 18 APN "C2'" "H2'1" sing N N 19 APN "C2'" "H2'2" sing N N 20 APN N H sing N N 21 APN N H2 sing N N 22 APN N H3 sing N N 23 APN N9 C8 sing Y N 24 APN N9 C4 sing Y N 25 APN C8 N7 doub Y N 26 APN C8 H8 sing N N 27 APN N7 C5 sing Y N 28 APN C5 C6 sing Y N 29 APN C5 C4 doub Y N 30 APN C6 N6 sing N N 31 APN C6 N1 doub Y N 32 APN N6 HN61 sing N N 33 APN N6 HN62 sing N N 34 APN N1 C2 sing Y N 35 APN C2 N3 doub Y N 36 APN C2 H21 sing N N 37 APN N3 C4 sing Y N 38 C OP3 P sing N N 39 C OP3 HOP3 sing N N 40 C P OP1 doub N N 41 C P OP2 sing N N 42 C P "O5'" sing N N 43 C OP2 HOP2 sing N N 44 C "O5'" "C5'" sing N N 45 C "C5'" "C4'" sing N N 46 C "C5'" "H5'" sing N N 47 C "C5'" "H5''" sing N N 48 C "C4'" "O4'" sing N N 49 C "C4'" "C3'" sing N N 50 C "C4'" "H4'" sing N N 51 C "O4'" "C1'" sing N N 52 C "C3'" "O3'" sing N N 53 C "C3'" "C2'" sing N N 54 C "C3'" "H3'" sing N N 55 C "O3'" "HO3'" sing N N 56 C "C2'" "O2'" sing N N 57 C "C2'" "C1'" sing N N 58 C "C2'" "H2'" sing N N 59 C "O2'" "HO2'" sing N N 60 C "C1'" N1 sing N N 61 C "C1'" "H1'" sing N N 62 C N1 C2 sing N N 63 C N1 C6 sing N N 64 C C2 O2 doub N N 65 C C2 N3 sing N N 66 C N3 C4 doub N N 67 C C4 N4 sing N N 68 C C4 C5 sing N N 69 C N4 H41 sing N N 70 C N4 H42 sing N N 71 C C5 C6 doub N N 72 C C5 H5 sing N N 73 C C6 H6 sing N N 74 CPN "C8'" "C7'" sing N N 75 CPN "C8'" N1 sing N N 76 CPN "C8'" "H8'1" sing N N 77 CPN "C8'" "H8'2" sing N N 78 CPN "C7'" "O7'" doub N N 79 CPN "C7'" "N4'" sing N N 80 CPN "C5'" C sing N N 81 CPN "C5'" "N4'" sing N N 82 CPN "C5'" "H5'1" sing N N 83 CPN "C5'" "H5'2" sing N N 84 CPN C O doub N N 85 CPN C OXT sing N N 86 CPN OXT HXT sing N N 87 CPN "N4'" "C3'" sing N N 88 CPN "C3'" "C2'" sing N N 89 CPN "C3'" "H3'1" sing N N 90 CPN "C3'" "H3'2" sing N N 91 CPN "C2'" N sing N N 92 CPN "C2'" "H2'1" sing N N 93 CPN "C2'" "H2'2" sing N N 94 CPN N H sing N N 95 CPN N H2 sing N N 96 CPN N H3 sing N N 97 CPN N1 C2 sing N N 98 CPN N1 C6 sing N N 99 CPN C2 N3 sing N N 100 CPN C2 O2 doub N N 101 CPN N3 C4 doub N N 102 CPN C4 C5 sing N N 103 CPN C4 N4 sing N N 104 CPN C5 C6 doub N N 105 CPN C5 H5 sing N N 106 CPN C6 H6 sing N N 107 CPN N4 HN41 sing N N 108 CPN N4 HN42 sing N N 109 G OP3 P sing N N 110 G OP3 HOP3 sing N N 111 G P OP1 doub N N 112 G P OP2 sing N N 113 G P "O5'" sing N N 114 G OP2 HOP2 sing N N 115 G "O5'" "C5'" sing N N 116 G "C5'" "C4'" sing N N 117 G "C5'" "H5'" sing N N 118 G "C5'" "H5''" sing N N 119 G "C4'" "O4'" sing N N 120 G "C4'" "C3'" sing N N 121 G "C4'" "H4'" sing N N 122 G "O4'" "C1'" sing N N 123 G "C3'" "O3'" sing N N 124 G "C3'" "C2'" sing N N 125 G "C3'" "H3'" sing N N 126 G "O3'" "HO3'" sing N N 127 G "C2'" "O2'" sing N N 128 G "C2'" "C1'" sing N N 129 G "C2'" "H2'" sing N N 130 G "O2'" "HO2'" sing N N 131 G "C1'" N9 sing N N 132 G "C1'" "H1'" sing N N 133 G N9 C8 sing Y N 134 G N9 C4 sing Y N 135 G C8 N7 doub Y N 136 G C8 H8 sing N N 137 G N7 C5 sing Y N 138 G C5 C6 sing N N 139 G C5 C4 doub Y N 140 G C6 O6 doub N N 141 G C6 N1 sing N N 142 G N1 C2 sing N N 143 G N1 H1 sing N N 144 G C2 N2 sing N N 145 G C2 N3 doub N N 146 G N2 H21 sing N N 147 G N2 H22 sing N N 148 G N3 C4 sing N N 149 GPN "C8'" "C7'" sing N N 150 GPN "C8'" N9 sing N N 151 GPN "C8'" "H8'1" sing N N 152 GPN "C8'" "H8'2" sing N N 153 GPN "C7'" "O7'" doub N N 154 GPN "C7'" "N4'" sing N N 155 GPN "C5'" C sing N N 156 GPN "C5'" "N4'" sing N N 157 GPN "C5'" "H5'1" sing N N 158 GPN "C5'" "H5'2" sing N N 159 GPN C O doub N N 160 GPN C OXT sing N N 161 GPN OXT HXT sing N N 162 GPN "N4'" "C3'" sing N N 163 GPN "C3'" "C2'" sing N N 164 GPN "C3'" "H3'1" sing N N 165 GPN "C3'" "H3'2" sing N N 166 GPN "C2'" N sing N N 167 GPN "C2'" "H2'1" sing N N 168 GPN "C2'" "H2'2" sing N N 169 GPN N H sing N N 170 GPN N H2 sing N N 171 GPN N H3 sing N N 172 GPN N9 C8 sing Y N 173 GPN N9 C4 sing Y N 174 GPN C8 N7 doub Y N 175 GPN C8 H8 sing N N 176 GPN N7 C5 sing Y N 177 GPN C5 C6 sing N N 178 GPN C5 C4 doub Y N 179 GPN C6 O6 doub N N 180 GPN C6 N1 sing N N 181 GPN N1 C2 sing N N 182 GPN N1 HN1 sing N N 183 GPN C2 N2 sing N N 184 GPN C2 N3 doub N N 185 GPN N2 HN21 sing N N 186 GPN N2 HN22 sing N N 187 GPN N3 C4 sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 U OP3 P sing N N 191 U OP3 HOP3 sing N N 192 U P OP1 doub N N 193 U P OP2 sing N N 194 U P "O5'" sing N N 195 U OP2 HOP2 sing N N 196 U "O5'" "C5'" sing N N 197 U "C5'" "C4'" sing N N 198 U "C5'" "H5'" sing N N 199 U "C5'" "H5''" sing N N 200 U "C4'" "O4'" sing N N 201 U "C4'" "C3'" sing N N 202 U "C4'" "H4'" sing N N 203 U "O4'" "C1'" sing N N 204 U "C3'" "O3'" sing N N 205 U "C3'" "C2'" sing N N 206 U "C3'" "H3'" sing N N 207 U "O3'" "HO3'" sing N N 208 U "C2'" "O2'" sing N N 209 U "C2'" "C1'" sing N N 210 U "C2'" "H2'" sing N N 211 U "O2'" "HO2'" sing N N 212 U "C1'" N1 sing N N 213 U "C1'" "H1'" sing N N 214 U N1 C2 sing N N 215 U N1 C6 sing N N 216 U C2 O2 doub N N 217 U C2 N3 sing N N 218 U N3 C4 sing N N 219 U N3 H3 sing N N 220 U C4 O4 doub N N 221 U C4 C5 sing N N 222 U C5 C6 doub N N 223 U C5 H5 sing N N 224 U C6 H6 sing N N 225 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Centre' Poland UMO-2011/01/B/NZ1/04429 1 'Ministry of Science and Higher Education' Poland 0450/IP1/2013/72 2 # _atom_sites.entry_id 5EMF _atom_sites.fract_transf_matrix[1][1] 0.028482 _atom_sites.fract_transf_matrix[1][2] 0.016444 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032888 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014469 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P # loop_