HEADER OXIDOREDUCTASE 09-NOV-15 5EN4 TITLE COMPLEX OF 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 14 WITH TITLE 2 INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 17-BETA-HYDROXYSTEROID DEHYDROGENASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 17-BETA-HSD 14,17-BETA-HYDROXYSTEROID DEHYDROGENASE DHRS10, COMPND 5 DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 10,RETINAL SHORT-CHAIN COMPND 6 DEHYDROGENASE/REDUCTASE RETSDR3,SHORT CHAIN DEHYDROGENASE/REDUCTASE COMPND 7 FAMILY 47C MEMBER 1; COMPND 8 EC: 1.1.1.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSD17B14, DHRS10, SDR3, SDR47C1, UNQ502/PRO474; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS INHIBITOR COMPLEX, STEROID DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.BERTOLETTI,F.BRAUN,S.MARCHAIS-OBERWINKLER,A.HEINE,G.KLEBE REVDAT 4 10-JAN-24 5EN4 1 REMARK REVDAT 3 06-SEP-17 5EN4 1 REMARK REVDAT 2 21-DEC-16 5EN4 1 JRNL REVDAT 1 23-NOV-16 5EN4 0 JRNL AUTH F.BRAUN,N.BERTOLETTI,G.MOLLER,J.ADAMSKI,T.STEINMETZER, JRNL AUTH 2 M.SALAH,A.S.ABDELSAMIE,C.J.VAN KOPPEN,A.HEINE,G.KLEBE, JRNL AUTH 3 S.MARCHAIS-OBERWINKLER JRNL TITL FIRST STRUCTURE-ACTIVITY RELATIONSHIP OF 17 JRNL TITL 2 BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 14 NONSTEROIDAL JRNL TITL 3 INHIBITORS AND CRYSTAL STRUCTURES IN COMPLEX WITH THE JRNL TITL 4 ENZYME. JRNL REF J. MED. CHEM. V. 59 10719 2016 JRNL REFN ISSN 1520-4804 JRNL PMID 27933965 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01436 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1-2155_1492: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.109 REMARK 3 R VALUE (WORKING SET) : 0.108 REMARK 3 FREE R VALUE : 0.129 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8000 - 3.8289 1.00 2844 150 0.1262 0.1274 REMARK 3 2 3.8289 - 3.0393 1.00 2702 142 0.1201 0.1526 REMARK 3 3 3.0393 - 2.6551 1.00 2686 142 0.1232 0.1457 REMARK 3 4 2.6551 - 2.4124 1.00 2651 139 0.1115 0.1351 REMARK 3 5 2.4124 - 2.2395 1.00 2648 140 0.0985 0.1289 REMARK 3 6 2.2395 - 2.1075 1.00 2644 139 0.0887 0.0929 REMARK 3 7 2.1075 - 2.0019 1.00 2624 138 0.0844 0.1088 REMARK 3 8 2.0019 - 1.9148 1.00 2616 138 0.0818 0.1189 REMARK 3 9 1.9148 - 1.8410 1.00 2630 138 0.0778 0.0900 REMARK 3 10 1.8410 - 1.7775 1.00 2607 137 0.0765 0.1225 REMARK 3 11 1.7775 - 1.7219 1.00 2646 140 0.0823 0.1259 REMARK 3 12 1.7219 - 1.6727 1.00 2592 136 0.0878 0.1311 REMARK 3 13 1.6727 - 1.6287 1.00 2620 138 0.0880 0.1327 REMARK 3 14 1.6287 - 1.5889 1.00 2592 136 0.0911 0.1401 REMARK 3 15 1.5889 - 1.5528 1.00 2604 137 0.0950 0.1218 REMARK 3 16 1.5528 - 1.5198 0.99 2596 137 0.1090 0.1603 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 9.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1984 REMARK 3 ANGLE : 1.062 2723 REMARK 3 CHIRALITY : 0.061 312 REMARK 3 PLANARITY : 0.006 402 REMARK 3 DIHEDRAL : 16.692 1207 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7-8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YDE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000 20% HEPES 0.1M DMSO 5%, PH REMARK 280 7.00, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.86200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.51100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.86200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.51100 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.86200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.51100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.86200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.51100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.86200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.51100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.86200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.51100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.86200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.51100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.86200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.86200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.51100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 91.72400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 91.72400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 CYS A 255 REMARK 465 LYS A 256 REMARK 465 ALA A 257 REMARK 465 SER A 258 REMARK 465 ARG A 259 REMARK 465 SER A 260 REMARK 465 THR A 261 REMARK 465 PRO A 262 REMARK 465 VAL A 263 REMARK 465 ASP A 264 REMARK 465 ALA A 265 REMARK 465 PRO A 266 REMARK 465 ASP A 267 REMARK 465 ILE A 268 REMARK 465 PRO A 269 REMARK 465 SER A 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 5 CG2 REMARK 470 LYS A 41 NZ REMARK 470 GLU A 66 CD OE1 OE2 REMARK 470 LYS A 70 CD CE NZ REMARK 470 ARG A 98 NE CZ NH1 NH2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 MET A 199 CE REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 35 O HOH A 401 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 55 C - N - CA ANGL. DEV. = 23.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 54 117.57 -38.31 REMARK 500 SER A 140 -132.16 -99.66 REMARK 500 ALA A 151 39.55 -155.34 REMARK 500 ALA A 235 55.93 -102.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 53 PRO A 54 148.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 O REMARK 620 2 LEU A 53 O 91.4 REMARK 620 3 PRO A 54 O 154.4 75.3 REMARK 620 4 ALA A 56 O 107.9 96.0 95.3 REMARK 620 5 HOH A 413 O 70.0 79.7 86.0 175.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5Q6 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YDE RELATED DB: PDB DBREF 5EN4 A 1 270 UNP Q9BPX1 DHB14_HUMAN 1 270 SEQRES 1 A 270 MET ALA THR GLY THR ARG TYR ALA GLY LYS VAL VAL VAL SEQRES 2 A 270 VAL THR GLY GLY GLY ARG GLY ILE GLY ALA GLY ILE VAL SEQRES 3 A 270 ARG ALA PHE VAL ASN SER GLY ALA ARG VAL VAL ILE CYS SEQRES 4 A 270 ASP LYS ASP GLU SER GLY GLY ARG ALA LEU GLU GLN GLU SEQRES 5 A 270 LEU PRO GLY ALA VAL PHE ILE LEU CYS ASP VAL THR GLN SEQRES 6 A 270 GLU ASP ASP VAL LYS THR LEU VAL SER GLU THR ILE ARG SEQRES 7 A 270 ARG PHE GLY ARG LEU ASP CYS VAL VAL ASN ASN ALA GLY SEQRES 8 A 270 HIS HIS PRO PRO PRO GLN ARG PRO GLU GLU THR SER ALA SEQRES 9 A 270 GLN GLY PHE ARG GLN LEU LEU GLU LEU ASN LEU LEU GLY SEQRES 10 A 270 THR TYR THR LEU THR LYS LEU ALA LEU PRO TYR LEU ARG SEQRES 11 A 270 LYS SER GLN GLY ASN VAL ILE ASN ILE SER SER LEU VAL SEQRES 12 A 270 GLY ALA ILE GLY GLN ALA GLN ALA VAL PRO TYR VAL ALA SEQRES 13 A 270 THR LYS GLY ALA VAL THR ALA MET THR LYS ALA LEU ALA SEQRES 14 A 270 LEU ASP GLU SER PRO TYR GLY VAL ARG VAL ASN CYS ILE SEQRES 15 A 270 SER PRO GLY ASN ILE TRP THR PRO LEU TRP GLU GLU LEU SEQRES 16 A 270 ALA ALA LEU MET PRO ASP PRO ARG ALA THR ILE ARG GLU SEQRES 17 A 270 GLY MET LEU ALA GLN PRO LEU GLY ARG MET GLY GLN PRO SEQRES 18 A 270 ALA GLU VAL GLY ALA ALA ALA VAL PHE LEU ALA SER GLU SEQRES 19 A 270 ALA ASN PHE CYS THR GLY ILE GLU LEU LEU VAL THR GLY SEQRES 20 A 270 GLY ALA GLU LEU GLY TYR GLY CYS LYS ALA SER ARG SER SEQRES 21 A 270 THR PRO VAL ASP ALA PRO ASP ILE PRO SER HET NAD A 301 44 HET 5Q6 A 302 24 HET NA A 303 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 5Q6 [2,3-BIS(OXIDANYL)PHENYL]-[6-(2-FLUORANYL-3-OXIDANYL- HETNAM 2 5Q6 PHENYL)PYRIDIN-2-YL]METHANONE HETNAM NA SODIUM ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 5Q6 C18 H12 F N O4 FORMUL 4 NA NA 1+ FORMUL 5 HOH *99(H2 O) HELIX 1 AA1 ARG A 19 SER A 32 1 14 HELIX 2 AA2 ASP A 42 LEU A 53 1 12 HELIX 3 AA3 GLN A 65 GLY A 81 1 17 HELIX 4 AA4 ARG A 98 THR A 102 5 5 HELIX 5 AA5 SER A 103 LEU A 115 1 13 HELIX 6 AA6 LEU A 115 GLN A 133 1 19 HELIX 7 AA7 LEU A 142 GLY A 147 1 6 HELIX 8 AA8 ALA A 151 SER A 173 1 23 HELIX 9 AA9 PRO A 174 GLY A 176 5 3 HELIX 10 AB1 THR A 189 LEU A 198 1 10 HELIX 11 AB2 ASP A 201 ALA A 212 1 12 HELIX 12 AB3 GLN A 220 GLU A 234 1 15 SHEET 1 AA1 7 ALA A 56 LEU A 60 0 SHEET 2 AA1 7 ARG A 35 ASP A 40 1 N ILE A 38 O VAL A 57 SHEET 3 AA1 7 VAL A 11 THR A 15 1 N VAL A 12 O VAL A 37 SHEET 4 AA1 7 CYS A 85 ASN A 88 1 O VAL A 87 N VAL A 13 SHEET 5 AA1 7 ASN A 135 ILE A 139 1 O ILE A 137 N VAL A 86 SHEET 6 AA1 7 ARG A 178 PRO A 184 1 O ASN A 180 N ASN A 138 SHEET 7 AA1 7 GLU A 242 VAL A 245 1 O LEU A 243 N CYS A 181 LINK O GLU A 50 NA NA A 303 1555 1555 2.33 LINK O LEU A 53 NA NA A 303 1555 1555 2.41 LINK O APRO A 54 NA NA A 303 1555 1555 2.49 LINK O ALA A 56 NA NA A 303 1555 1555 2.39 LINK NA NA A 303 O HOH A 413 1555 1555 2.34 SITE 1 AC1 29 GLY A 16 ARG A 19 GLY A 20 ILE A 21 SITE 2 AC1 29 ASP A 40 LYS A 41 CYS A 61 ASP A 62 SITE 3 AC1 29 VAL A 63 ASN A 89 GLY A 91 LEU A 113 SITE 4 AC1 29 ILE A 139 SER A 140 SER A 141 TYR A 154 SITE 5 AC1 29 LYS A 158 PRO A 184 GLY A 185 ILE A 187 SITE 6 AC1 29 THR A 189 PRO A 190 LEU A 191 TRP A 192 SITE 7 AC1 29 5Q6 A 302 HOH A 419 HOH A 426 HOH A 428 SITE 8 AC1 29 HOH A 480 SITE 1 AC2 10 HIS A 93 SER A 141 GLN A 148 ALA A 149 SITE 2 AC2 10 GLN A 150 TYR A 154 ASN A 186 TRP A 192 SITE 3 AC2 10 LEU A 195 NAD A 301 SITE 1 AC3 5 GLU A 50 LEU A 53 PRO A 54 ALA A 56 SITE 2 AC3 5 HOH A 413 CRYST1 91.724 91.724 135.022 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007406 0.00000