HEADER SOLUTE-BINDING PROTEIN 13-NOV-15 5ER3 TITLE CRYSTAL STRUCTURE OF ABC TRANSPORTER SYSTEM SOLUTE-BINDING PROTEIN TITLE 2 FROM RHODOPIRELLULA BALTICA SH 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPIRELLULA BALTICA (STRAIN DSM 10527 / SOURCE 3 NCIMB 13988 / SH1); SOURCE 4 ORGANISM_TAXID: 243090; SOURCE 5 STRAIN: DSM 10527 / NCIMB 13988 / SH1; SOURCE 6 GENE: RB10898; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ABC TRANSPORTER, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.DUKE,M.ENDRES,J.MACK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 1 25-NOV-15 5ER3 0 JRNL AUTH C.CHANG,N.DUKE,M.ENDRES,J.MACK,A.JOACHIMIAK, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF ABC TRANSPORTER SYSTEM SOLUTE-BINDING JRNL TITL 2 PROTEIN FROM RHODOPIRELLULA BALTICA SH 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 33740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8150 - 4.8156 1.00 2912 175 0.1673 0.1764 REMARK 3 2 4.8156 - 3.8239 1.00 2924 141 0.1311 0.1494 REMARK 3 3 3.8239 - 3.3409 1.00 2930 187 0.1577 0.2005 REMARK 3 4 3.3409 - 3.0357 1.00 2944 140 0.1827 0.2354 REMARK 3 5 3.0357 - 2.8182 1.00 2928 144 0.1963 0.2521 REMARK 3 6 2.8182 - 2.6521 1.00 2974 138 0.2113 0.2512 REMARK 3 7 2.6521 - 2.5193 0.98 2934 114 0.2003 0.2652 REMARK 3 8 2.5193 - 2.4097 0.95 2747 162 0.2132 0.2319 REMARK 3 9 2.4097 - 2.3169 0.88 2556 167 0.2020 0.2121 REMARK 3 10 2.3169 - 2.2370 0.80 2375 113 0.1973 0.2240 REMARK 3 11 2.2370 - 2.1671 0.70 2046 92 0.2042 0.2406 REMARK 3 12 2.1671 - 2.1051 0.61 1798 99 0.2102 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2393 REMARK 3 ANGLE : 0.678 3247 REMARK 3 CHIRALITY : 0.051 370 REMARK 3 PLANARITY : 0.005 430 REMARK 3 DIHEDRAL : 11.305 1444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2952 2.0655 9.6976 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.1884 REMARK 3 T33: 0.2221 T12: 0.0007 REMARK 3 T13: 0.0115 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.9642 L22: 2.3568 REMARK 3 L33: 1.5032 L12: 1.0083 REMARK 3 L13: -0.6445 L23: 0.2091 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: -0.0133 S13: 0.1653 REMARK 3 S21: 0.1408 S22: 0.0019 S23: 0.3914 REMARK 3 S31: -0.0480 S32: -0.0973 S33: -0.0409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8843 16.9372 -3.5653 REMARK 3 T TENSOR REMARK 3 T11: 0.1232 T22: 0.1718 REMARK 3 T33: 0.1993 T12: -0.0112 REMARK 3 T13: -0.0053 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.3499 L22: 2.2871 REMARK 3 L33: 1.8127 L12: 0.2965 REMARK 3 L13: -0.2701 L23: -1.2707 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.0479 S13: -0.0138 REMARK 3 S21: 0.0078 S22: -0.1160 S23: -0.2491 REMARK 3 S31: -0.0423 S32: 0.1635 S33: 0.0615 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1349 28.0372 -10.6933 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.1658 REMARK 3 T33: 0.1733 T12: -0.0141 REMARK 3 T13: -0.0009 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.5025 L22: 2.1464 REMARK 3 L33: 2.6951 L12: -0.6195 REMARK 3 L13: 0.6781 L23: -0.6531 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: 0.0417 S13: 0.2024 REMARK 3 S21: 0.1833 S22: -0.0189 S23: -0.1093 REMARK 3 S31: -0.3943 S32: -0.0070 S33: 0.1263 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6315 23.1307 -21.8209 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.2021 REMARK 3 T33: 0.1718 T12: 0.0113 REMARK 3 T13: 0.0086 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.7688 L22: 1.6952 REMARK 3 L33: 2.4348 L12: 0.1766 REMARK 3 L13: 0.5163 L23: 1.0995 REMARK 3 S TENSOR REMARK 3 S11: -0.2425 S12: 0.1268 S13: 0.0240 REMARK 3 S21: -0.3737 S22: 0.1179 S23: -0.0084 REMARK 3 S31: -0.0881 S32: -0.0368 S33: 0.1198 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5160 14.4465 -17.1967 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.2407 REMARK 3 T33: 0.1690 T12: -0.0013 REMARK 3 T13: 0.0213 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.9051 L22: 1.7694 REMARK 3 L33: 2.7058 L12: -0.7959 REMARK 3 L13: 1.4977 L23: -0.8131 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0248 S13: -0.0111 REMARK 3 S21: -0.0056 S22: -0.0155 S23: 0.0172 REMARK 3 S31: 0.1433 S32: -0.2351 S33: 0.0161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6205 -2.5472 -1.1098 REMARK 3 T TENSOR REMARK 3 T11: 0.1990 T22: 0.1929 REMARK 3 T33: 0.1816 T12: -0.0228 REMARK 3 T13: -0.0101 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.2509 L22: 2.0039 REMARK 3 L33: 1.9391 L12: 0.0223 REMARK 3 L13: -0.7038 L23: -0.5026 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.2892 S13: -0.0161 REMARK 3 S21: -0.1723 S22: -0.0280 S23: -0.0349 REMARK 3 S31: 0.0181 S32: -0.0513 S33: 0.0362 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ER3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97899 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19830 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, BUCCANEER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM CHLORIDE, HEPES, PEG4000, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.37750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.78800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.37750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.78800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.75500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 THR A 28 REMARK 465 VAL A 29 REMARK 465 LYS A 30 REMARK 465 THR A 31 REMARK 465 GLN A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 VAL A 37 REMARK 465 VAL A 38 REMARK 465 ALA A 39 REMARK 465 ASP A 40 REMARK 465 ALA A 41 REMARK 465 SER A 42 REMARK 465 ALA A 43 REMARK 465 ASP A 44 REMARK 465 ALA A 45 REMARK 465 THR A 46 REMARK 465 GLY A 365 REMARK 465 ASN A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 51 CG CD OE1 NE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLN A 202 CG CD OE1 NE2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 PRO A 360 CG CD REMARK 470 ILE A 362 CG1 CG2 CD1 REMARK 470 LEU A 363 CG CD1 CD2 REMARK 470 GLN A 364 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 117 177.88 71.56 REMARK 500 SER A 216 -177.93 -177.37 REMARK 500 LEU A 217 32.15 -98.00 REMARK 500 ASP A 294 -45.73 74.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 127 O REMARK 620 2 HOH A 539 O 69.1 REMARK 620 3 HOH A 565 O 78.4 144.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC110940 RELATED DB: TARGETTRACK DBREF 5ER3 A 26 366 UNP Q7UK26 Q7UK26_RHOBA 26 366 SEQRES 1 A 341 SER SER THR VAL LYS THR GLN SER GLY SER ASP VAL VAL SEQRES 2 A 341 ALA ASP ALA SER ALA ASP ALA THR GLY PHE PRO ARG GLN SEQRES 3 A 341 CYS GLY ASP TYR THR VAL LEU GLY ILE LEU THR ASP ASN SEQRES 4 A 341 GLN ASP ASN SER LYS ALA LYS GLU ASN ALA GLU THR THR SEQRES 5 A 341 LEU LEU ARG HIS PRO ASN VAL ALA CYS LEU VAL GLY LEU SEQRES 6 A 341 TRP SER GLN ASN THR PRO MSE ILE LEU ALA GLY LEU ARG SEQRES 7 A 341 SER SER ASP ALA ILE GLY LYS VAL ALA VAL VAL GLY PHE SEQRES 8 A 341 ASP GLU HIS PRO ASP THR LEU ALA GLY ILE ARG ASP GLN SEQRES 9 A 341 SER VAL TYR GLY THR ILE VAL GLN GLN PRO TYR ALA PHE SEQRES 10 A 341 GLY TYR ARG SER VAL GLN TRP LEU THR THR MSE ALA LYS SEQRES 11 A 341 GLY GLY GLU VAL GLU VAL PRO GLU SER GLY MSE ILE ILE SEQRES 12 A 341 ILE PRO HIS ARG SER ILE THR GLY ALA ASN VAL ASN GLU SEQRES 13 A 341 PHE ALA ALA ASP ILE ASP ALA ILE LYS SER GLY LYS GLY SEQRES 14 A 341 PRO ILE LEU SER GLY GLU GLN GLN ILE ASP GLY SER GLY SEQRES 15 A 341 VAL ARG VAL ALA TYR ILE THR ASN SER LEU ASP PRO PHE SEQRES 16 A 341 TRP THR LEU ALA ASP ALA GLY CYS LYS ARG ALA ALA GLU SEQRES 17 A 341 GLN PHE GLY CYS GLU VAL ASP VAL GLN MSE PRO SER SER SEQRES 18 A 341 GLY SER ILE GLU GLU GLN LYS ARG PHE LEU GLU SER ASN SEQRES 19 A 341 VAL ALA ALA LYS VAL ASP GLY ILE ALA ILE SER PRO ILE SEQRES 20 A 341 ASP PRO GLU ASN GLN VAL ALA MSE ILE ASN ASP ALA CYS SEQRES 21 A 341 LYS VAL THR PRO VAL ILE CYS GLN ASP SER ASP ALA PRO SEQRES 22 A 341 ALA SER ARG ARG LYS PHE TYR LEU GLY THR SER ASN TYR SEQRES 23 A 341 LEU ALA GLY ARG ALA ALA GLY LYS LEU ILE GLN GLU ALA SEQRES 24 A 341 ILE PRO GLU GLY GLY GLU VAL MSE LEU PHE VAL GLY LYS SEQRES 25 A 341 MSE GLU VAL LEU ASN ALA GLN GLU ARG SER GLN GLY ILE SEQRES 26 A 341 MSE ASP GLU LEU ALA GLY LYS PRO ILE PRO ALA ILE LEU SEQRES 27 A 341 GLN GLY ASN MODRES 5ER3 MSE A 97 MET MODIFIED RESIDUE MODRES 5ER3 MSE A 153 MET MODIFIED RESIDUE MODRES 5ER3 MSE A 166 MET MODIFIED RESIDUE MODRES 5ER3 MSE A 243 MET MODIFIED RESIDUE MODRES 5ER3 MSE A 280 MET MODIFIED RESIDUE MODRES 5ER3 MSE A 332 MET MODIFIED RESIDUE MODRES 5ER3 MSE A 338 MET MODIFIED RESIDUE MODRES 5ER3 MSE A 351 MET MODIFIED RESIDUE HET MSE A 97 8 HET MSE A 153 8 HET MSE A 166 8 HET MSE A 243 8 HET MSE A 280 8 HET MSE A 332 8 HET MSE A 338 8 HET MSE A 351 8 HET CA A 401 1 HET GOL A 402 6 HET GOL A 403 6 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *98(H2 O) HELIX 1 AA1 ASP A 66 HIS A 81 1 16 HELIX 2 AA2 GLN A 93 SER A 105 1 13 HELIX 3 AA3 HIS A 119 ASP A 128 1 10 HELIX 4 AA4 GLN A 138 LYS A 155 1 18 HELIX 5 AA5 ASN A 178 SER A 191 1 14 HELIX 6 AA6 PRO A 219 GLY A 236 1 18 HELIX 7 AA7 SER A 248 ALA A 262 1 15 HELIX 8 AA8 ASP A 273 ASN A 276 5 4 HELIX 9 AA9 GLN A 277 LYS A 286 1 10 HELIX 10 AB1 SER A 309 ILE A 325 1 17 HELIX 11 AB2 VAL A 340 ALA A 355 1 16 SHEET 1 AA1 7 ARG A 50 CYS A 52 0 SHEET 2 AA1 7 TYR A 55 THR A 62 -1 O TYR A 55 N CYS A 52 SHEET 3 AA1 7 GLY A 329 VAL A 335 1 O VAL A 331 N THR A 56 SHEET 4 AA1 7 VAL A 84 GLY A 89 1 N VAL A 88 O MSE A 332 SHEET 5 AA1 7 ALA A 112 PHE A 116 1 O ALA A 112 N ALA A 85 SHEET 6 AA1 7 GLY A 133 VAL A 136 1 O GLY A 133 N GLY A 115 SHEET 7 AA1 7 ARG A 172 THR A 175 -1 O ILE A 174 N THR A 134 SHEET 1 AA2 6 MSE A 166 ILE A 168 0 SHEET 2 AA2 6 TYR A 305 GLY A 307 1 O TYR A 305 N ILE A 167 SHEET 3 AA2 6 VAL A 290 GLN A 293 1 N CYS A 292 O LEU A 306 SHEET 4 AA2 6 GLY A 266 ILE A 269 1 N ILE A 267 O ILE A 291 SHEET 5 AA2 6 ARG A 209 ILE A 213 1 N ILE A 213 O ALA A 268 SHEET 6 AA2 6 GLU A 238 GLN A 242 1 O GLN A 242 N TYR A 212 LINK C PRO A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N ILE A 98 1555 1555 1.34 LINK O ARG A 127 CA CA A 401 1555 1555 2.41 LINK C THR A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N ALA A 154 1555 1555 1.34 LINK C GLY A 165 N MSE A 166 1555 1555 1.34 LINK C MSE A 166 N ILE A 167 1555 1555 1.33 LINK C GLN A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N PRO A 244 1555 1555 1.35 LINK C ALA A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N ILE A 281 1555 1555 1.34 LINK C VAL A 331 N MSE A 332 1555 1555 1.33 LINK C MSE A 332 N LEU A 333 1555 1555 1.33 LINK C LYS A 337 N MSE A 338 1555 1555 1.33 LINK C MSE A 338 N GLU A 339 1555 1555 1.33 LINK C ILE A 350 N MSE A 351 1555 1555 1.33 LINK C MSE A 351 N ASP A 352 1555 1555 1.34 LINK CA CA A 401 O HOH A 539 1555 1555 2.76 LINK CA CA A 401 O HOH A 565 1555 1556 2.70 CISPEP 1 PHE A 48 PRO A 49 0 -0.46 SITE 1 AC1 3 ARG A 127 HOH A 539 HOH A 565 SITE 1 AC2 5 GLN A 138 TYR A 140 ARG A 172 PHE A 182 SITE 2 AC2 5 HOH A 522 SITE 1 AC3 3 ASN A 215 ASP A 294 HOH A 507 CRYST1 74.755 95.576 46.245 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021624 0.00000