HEADER TRANSFERASE 18-NOV-15 5EUC TITLE THE ROLE OF THE C-TERMINAL REGION ON THE OLIGOMERIC STATE AND TITLE 2 ENZYMATIC ACTIVITY OF TRYPANOSOMA CRUZI HYPOXANTHINE PHOSPHORIBOSYL TITLE 3 TRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 21-241; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053509693.70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22-B KEYWDS HPRT, PHOSPHORIBOSYLTRANSFERASE, T. CRUZI, QUATERNARY STRUCTURE, KEYWDS 2 ENZYMATIC ACTIVITY MODULATION, STABILITY, PROTEOLYSIS, REVERSIBLE KEYWDS 3 OLIGOMERIZATION, DISORDER C-TERMINAL REGION, BISPHOSPHONATES, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.M.VALSECCHI,A.COUSIDO-SIAH,A.MITSCHLER,A.PODJARNY,J.M.DELFINO, AUTHOR 2 J.SANTOS REVDAT 2 27-SEP-23 5EUC 1 REMARK REVDAT 1 30-MAR-16 5EUC 0 JRNL AUTH W.M.VALSECCHI,A.COUSIDO-SIAH,L.A.DEFELIPE,A.MITSCHLER, JRNL AUTH 2 A.PODJARNY,J.SANTOS,J.M.DELFINO JRNL TITL THE ROLE OF THE C-TERMINAL REGION ON THE OLIGOMERIC STATE JRNL TITL 2 AND ENZYMATIC ACTIVITY OF TRYPANOSOMA CRUZI HYPOXANTHINE JRNL TITL 3 PHOSPHORIBOSYL TRANSFERASE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1864 655 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 26969784 JRNL DOI 10.1016/J.BBAPAP.2016.03.005 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1588 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.389 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.279 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6404 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6200 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8668 ; 1.539 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14199 ; 0.789 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 770 ; 6.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 310 ;33.273 ;22.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1118 ;15.795 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 70 ;20.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 982 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7110 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1508 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5EUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.800000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 36.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TC2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE DROP WAS A 1:1 MIX OF PROTEIN (IN REMARK 280 TRIS 20 MM PH8, NACL 100 MM) AND BUFFER (1.0 MM MES BUFFER PH REMARK 280 6.5 AND 12 % W/V OF PEG 20000), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.22833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.45667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 199 REMARK 465 LYS A 200 REMARK 465 GLN A 201 REMARK 465 ARG A 202 REMARK 465 ALA A 203 REMARK 465 ILE A 204 REMARK 465 GLY A 205 REMARK 465 SER A 206 REMARK 465 ALA A 207 REMARK 465 ASP A 208 REMARK 465 THR A 209 REMARK 465 ASP A 210 REMARK 465 ARG A 211 REMARK 465 ASP A 212 REMARK 465 ALA A 213 REMARK 465 LYS A 214 REMARK 465 ARG A 215 REMARK 465 GLU A 216 REMARK 465 PHE A 217 REMARK 465 HIS A 218 REMARK 465 SER A 219 REMARK 465 LYS A 220 REMARK 465 TYR A 221 REMARK 465 LEU A 222 REMARK 465 GLU A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 MET B 1 REMARK 465 ARG B 197 REMARK 465 GLN B 198 REMARK 465 LYS B 199 REMARK 465 LYS B 200 REMARK 465 GLN B 201 REMARK 465 ARG B 202 REMARK 465 ALA B 203 REMARK 465 ILE B 204 REMARK 465 GLY B 205 REMARK 465 SER B 206 REMARK 465 ALA B 207 REMARK 465 ASP B 208 REMARK 465 THR B 209 REMARK 465 ASP B 210 REMARK 465 ARG B 211 REMARK 465 ASP B 212 REMARK 465 ALA B 213 REMARK 465 LYS B 214 REMARK 465 ARG B 215 REMARK 465 GLU B 216 REMARK 465 PHE B 217 REMARK 465 HIS B 218 REMARK 465 SER B 219 REMARK 465 LYS B 220 REMARK 465 TYR B 221 REMARK 465 LEU B 222 REMARK 465 GLU B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 ARG C 3 REMARK 465 ARG C 197 REMARK 465 GLN C 198 REMARK 465 LYS C 199 REMARK 465 LYS C 200 REMARK 465 GLN C 201 REMARK 465 ARG C 202 REMARK 465 ALA C 203 REMARK 465 ILE C 204 REMARK 465 GLY C 205 REMARK 465 SER C 206 REMARK 465 ALA C 207 REMARK 465 ASP C 208 REMARK 465 THR C 209 REMARK 465 ASP C 210 REMARK 465 ARG C 211 REMARK 465 ASP C 212 REMARK 465 ALA C 213 REMARK 465 LYS C 214 REMARK 465 ARG C 215 REMARK 465 GLU C 216 REMARK 465 PHE C 217 REMARK 465 HIS C 218 REMARK 465 SER C 219 REMARK 465 LYS C 220 REMARK 465 TYR C 221 REMARK 465 LEU C 222 REMARK 465 GLU C 223 REMARK 465 HIS C 224 REMARK 465 HIS C 225 REMARK 465 HIS C 226 REMARK 465 HIS C 227 REMARK 465 HIS C 228 REMARK 465 HIS C 229 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 ARG D 3 REMARK 465 ARG D 193 REMARK 465 GLU D 194 REMARK 465 ALA D 195 REMARK 465 ALA D 196 REMARK 465 ARG D 197 REMARK 465 GLN D 198 REMARK 465 LYS D 199 REMARK 465 LYS D 200 REMARK 465 GLN D 201 REMARK 465 ARG D 202 REMARK 465 ALA D 203 REMARK 465 ILE D 204 REMARK 465 GLY D 205 REMARK 465 SER D 206 REMARK 465 ALA D 207 REMARK 465 ASP D 208 REMARK 465 THR D 209 REMARK 465 ASP D 210 REMARK 465 ARG D 211 REMARK 465 ASP D 212 REMARK 465 ALA D 213 REMARK 465 LYS D 214 REMARK 465 ARG D 215 REMARK 465 GLU D 216 REMARK 465 PHE D 217 REMARK 465 HIS D 218 REMARK 465 SER D 219 REMARK 465 LYS D 220 REMARK 465 TYR D 221 REMARK 465 LEU D 222 REMARK 465 GLU D 223 REMARK 465 HIS D 224 REMARK 465 HIS D 225 REMARK 465 HIS D 226 REMARK 465 HIS D 227 REMARK 465 HIS D 228 REMARK 465 HIS D 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 147 O PHE B 151 2.14 REMARK 500 OE1 GLU A 16 NH1 ARG A 19 2.17 REMARK 500 OD2 ASP C 32 OH TYR C 155 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 41 -62.16 60.79 REMARK 500 ASN A 43 58.26 -150.52 REMARK 500 ASP A 115 -73.81 -115.95 REMARK 500 LYS A 143 76.42 -112.64 REMARK 500 PHE A 164 97.45 -62.65 REMARK 500 TYR B 41 -62.65 58.63 REMARK 500 ASN B 43 53.50 -147.75 REMARK 500 GLU B 84 -65.46 -95.21 REMARK 500 ASP B 115 -77.37 -117.56 REMARK 500 LYS B 143 74.51 -119.12 REMARK 500 TYR C 41 -57.45 61.16 REMARK 500 ASN C 43 56.02 -145.61 REMARK 500 ASP C 115 -80.69 -114.38 REMARK 500 PHE C 164 99.38 -65.97 REMARK 500 TYR D 41 -61.27 64.54 REMARK 500 ASN D 43 53.85 -144.12 REMARK 500 LEU D 86 136.67 -171.91 REMARK 500 ASP D 115 -76.75 -117.63 REMARK 500 PRO D 161 -158.32 -83.63 REMARK 500 PHE D 164 94.12 -60.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 86 THR B 87 -140.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 5EUC A 1 221 UNP Q4DRC4 Q4DRC4_TRYCC 21 241 DBREF 5EUC B 1 221 UNP Q4DRC4 Q4DRC4_TRYCC 21 241 DBREF 5EUC C 1 221 UNP Q4DRC4 Q4DRC4_TRYCC 21 241 DBREF 5EUC D 1 221 UNP Q4DRC4 Q4DRC4_TRYCC 21 241 SEQADV 5EUC LEU A 222 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC GLU A 223 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS A 224 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS A 225 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS A 226 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS A 227 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS A 228 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS A 229 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC LEU B 222 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC GLU B 223 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS B 224 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS B 225 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS B 226 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS B 227 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS B 228 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS B 229 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC LEU C 222 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC GLU C 223 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS C 224 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS C 225 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS C 226 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS C 227 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS C 228 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS C 229 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC LEU D 222 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC GLU D 223 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS D 224 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS D 225 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS D 226 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS D 227 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS D 228 UNP Q4DRC4 EXPRESSION TAG SEQADV 5EUC HIS D 229 UNP Q4DRC4 EXPRESSION TAG SEQRES 1 A 229 MET PRO ARG GLU TYR GLU PHE ALA GLU LYS ILE LEU PHE SEQRES 2 A 229 THR GLU GLU GLU ILE ARG THR ARG ILE LYS GLU VAL ALA SEQRES 3 A 229 LYS ARG ILE ALA ASP ASP TYR LYS GLY LYS GLY LEU ARG SEQRES 4 A 229 PRO TYR VAL ASN PRO LEU VAL LEU ILE SER VAL LEU LYS SEQRES 5 A 229 GLY SER PHE MET PHE THR ALA ASP LEU CYS ARG ALA LEU SEQRES 6 A 229 CYS ASP PHE ASN VAL PRO VAL ARG MET GLU PHE ILE CYS SEQRES 7 A 229 VAL SER SER TYR GLY GLU GLY LEU THR SER SER GLY GLN SEQRES 8 A 229 VAL ARG MET LEU LEU ASP THR ARG HIS SER ILE GLU GLY SEQRES 9 A 229 HIS HIS VAL LEU ILE VAL GLU ASP ILE VAL ASP THR ALA SEQRES 10 A 229 LEU THR LEU ASN TYR LEU TYR HIS MET TYR PHE THR ARG SEQRES 11 A 229 ARG PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP LYS SEQRES 12 A 229 ARG GLU GLY ARG ARG VAL PRO PHE SER ALA ASP TYR VAL SEQRES 13 A 229 VAL ALA ASN ILE PRO ASN ALA PHE VAL ILE GLY TYR GLY SEQRES 14 A 229 LEU ASP TYR ASP ASP THR TYR ARG GLU LEU ARG ASP ILE SEQRES 15 A 229 VAL VAL LEU ARG PRO GLU VAL TYR ALA GLU ARG GLU ALA SEQRES 16 A 229 ALA ARG GLN LYS LYS GLN ARG ALA ILE GLY SER ALA ASP SEQRES 17 A 229 THR ASP ARG ASP ALA LYS ARG GLU PHE HIS SER LYS TYR SEQRES 18 A 229 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 229 MET PRO ARG GLU TYR GLU PHE ALA GLU LYS ILE LEU PHE SEQRES 2 B 229 THR GLU GLU GLU ILE ARG THR ARG ILE LYS GLU VAL ALA SEQRES 3 B 229 LYS ARG ILE ALA ASP ASP TYR LYS GLY LYS GLY LEU ARG SEQRES 4 B 229 PRO TYR VAL ASN PRO LEU VAL LEU ILE SER VAL LEU LYS SEQRES 5 B 229 GLY SER PHE MET PHE THR ALA ASP LEU CYS ARG ALA LEU SEQRES 6 B 229 CYS ASP PHE ASN VAL PRO VAL ARG MET GLU PHE ILE CYS SEQRES 7 B 229 VAL SER SER TYR GLY GLU GLY LEU THR SER SER GLY GLN SEQRES 8 B 229 VAL ARG MET LEU LEU ASP THR ARG HIS SER ILE GLU GLY SEQRES 9 B 229 HIS HIS VAL LEU ILE VAL GLU ASP ILE VAL ASP THR ALA SEQRES 10 B 229 LEU THR LEU ASN TYR LEU TYR HIS MET TYR PHE THR ARG SEQRES 11 B 229 ARG PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP LYS SEQRES 12 B 229 ARG GLU GLY ARG ARG VAL PRO PHE SER ALA ASP TYR VAL SEQRES 13 B 229 VAL ALA ASN ILE PRO ASN ALA PHE VAL ILE GLY TYR GLY SEQRES 14 B 229 LEU ASP TYR ASP ASP THR TYR ARG GLU LEU ARG ASP ILE SEQRES 15 B 229 VAL VAL LEU ARG PRO GLU VAL TYR ALA GLU ARG GLU ALA SEQRES 16 B 229 ALA ARG GLN LYS LYS GLN ARG ALA ILE GLY SER ALA ASP SEQRES 17 B 229 THR ASP ARG ASP ALA LYS ARG GLU PHE HIS SER LYS TYR SEQRES 18 B 229 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 229 MET PRO ARG GLU TYR GLU PHE ALA GLU LYS ILE LEU PHE SEQRES 2 C 229 THR GLU GLU GLU ILE ARG THR ARG ILE LYS GLU VAL ALA SEQRES 3 C 229 LYS ARG ILE ALA ASP ASP TYR LYS GLY LYS GLY LEU ARG SEQRES 4 C 229 PRO TYR VAL ASN PRO LEU VAL LEU ILE SER VAL LEU LYS SEQRES 5 C 229 GLY SER PHE MET PHE THR ALA ASP LEU CYS ARG ALA LEU SEQRES 6 C 229 CYS ASP PHE ASN VAL PRO VAL ARG MET GLU PHE ILE CYS SEQRES 7 C 229 VAL SER SER TYR GLY GLU GLY LEU THR SER SER GLY GLN SEQRES 8 C 229 VAL ARG MET LEU LEU ASP THR ARG HIS SER ILE GLU GLY SEQRES 9 C 229 HIS HIS VAL LEU ILE VAL GLU ASP ILE VAL ASP THR ALA SEQRES 10 C 229 LEU THR LEU ASN TYR LEU TYR HIS MET TYR PHE THR ARG SEQRES 11 C 229 ARG PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP LYS SEQRES 12 C 229 ARG GLU GLY ARG ARG VAL PRO PHE SER ALA ASP TYR VAL SEQRES 13 C 229 VAL ALA ASN ILE PRO ASN ALA PHE VAL ILE GLY TYR GLY SEQRES 14 C 229 LEU ASP TYR ASP ASP THR TYR ARG GLU LEU ARG ASP ILE SEQRES 15 C 229 VAL VAL LEU ARG PRO GLU VAL TYR ALA GLU ARG GLU ALA SEQRES 16 C 229 ALA ARG GLN LYS LYS GLN ARG ALA ILE GLY SER ALA ASP SEQRES 17 C 229 THR ASP ARG ASP ALA LYS ARG GLU PHE HIS SER LYS TYR SEQRES 18 C 229 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 229 MET PRO ARG GLU TYR GLU PHE ALA GLU LYS ILE LEU PHE SEQRES 2 D 229 THR GLU GLU GLU ILE ARG THR ARG ILE LYS GLU VAL ALA SEQRES 3 D 229 LYS ARG ILE ALA ASP ASP TYR LYS GLY LYS GLY LEU ARG SEQRES 4 D 229 PRO TYR VAL ASN PRO LEU VAL LEU ILE SER VAL LEU LYS SEQRES 5 D 229 GLY SER PHE MET PHE THR ALA ASP LEU CYS ARG ALA LEU SEQRES 6 D 229 CYS ASP PHE ASN VAL PRO VAL ARG MET GLU PHE ILE CYS SEQRES 7 D 229 VAL SER SER TYR GLY GLU GLY LEU THR SER SER GLY GLN SEQRES 8 D 229 VAL ARG MET LEU LEU ASP THR ARG HIS SER ILE GLU GLY SEQRES 9 D 229 HIS HIS VAL LEU ILE VAL GLU ASP ILE VAL ASP THR ALA SEQRES 10 D 229 LEU THR LEU ASN TYR LEU TYR HIS MET TYR PHE THR ARG SEQRES 11 D 229 ARG PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP LYS SEQRES 12 D 229 ARG GLU GLY ARG ARG VAL PRO PHE SER ALA ASP TYR VAL SEQRES 13 D 229 VAL ALA ASN ILE PRO ASN ALA PHE VAL ILE GLY TYR GLY SEQRES 14 D 229 LEU ASP TYR ASP ASP THR TYR ARG GLU LEU ARG ASP ILE SEQRES 15 D 229 VAL VAL LEU ARG PRO GLU VAL TYR ALA GLU ARG GLU ALA SEQRES 16 D 229 ALA ARG GLN LYS LYS GLN ARG ALA ILE GLY SER ALA ASP SEQRES 17 D 229 THR ASP ARG ASP ALA LYS ARG GLU PHE HIS SER LYS TYR SEQRES 18 D 229 LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *111(H2 O) HELIX 1 AA1 THR A 14 LYS A 34 1 21 HELIX 2 AA2 GLY A 35 GLY A 37 5 3 HELIX 3 AA3 SER A 54 PHE A 68 1 15 HELIX 4 AA4 ALA A 117 THR A 129 1 13 HELIX 5 AA5 ARG A 144 ARG A 147 5 4 HELIX 6 AA6 ARG A 186 ARG A 197 1 12 HELIX 7 AA7 THR B 14 TYR B 33 1 20 HELIX 8 AA8 LYS B 34 GLY B 37 5 4 HELIX 9 AA9 SER B 54 PHE B 68 1 15 HELIX 10 AB1 ALA B 117 THR B 129 1 13 HELIX 11 AB2 ARG B 144 ARG B 147 5 4 HELIX 12 AB3 ARG B 186 ALA B 196 1 11 HELIX 13 AB4 THR C 14 TYR C 33 1 20 HELIX 14 AB5 LYS C 34 GLY C 37 5 4 HELIX 15 AB6 SER C 54 PHE C 68 1 15 HELIX 16 AB7 ALA C 117 THR C 129 1 13 HELIX 17 AB8 ARG C 144 ARG C 147 5 4 HELIX 18 AB9 ARG C 186 ALA C 196 1 11 HELIX 19 AC1 THR D 14 TYR D 33 1 20 HELIX 20 AC2 LYS D 34 GLY D 37 5 4 HELIX 21 AC3 SER D 54 PHE D 68 1 15 HELIX 22 AC4 ALA D 117 THR D 129 1 13 HELIX 23 AC5 ARG D 144 ARG D 147 5 4 HELIX 24 AC6 ARG D 186 GLU D 192 1 7 SHEET 1 AA1 3 ALA A 8 PHE A 13 0 SHEET 2 AA1 3 ILE A 182 LEU A 185 -1 O ILE A 182 N LEU A 12 SHEET 3 AA1 3 VAL A 165 ILE A 166 -1 N ILE A 166 O VAL A 183 SHEET 1 AA2 6 VAL A 92 LEU A 96 0 SHEET 2 AA2 6 VAL A 72 SER A 81 -1 N SER A 80 O ARG A 93 SHEET 3 AA2 6 LEU A 45 VAL A 50 1 N LEU A 47 O ARG A 73 SHEET 4 AA2 6 HIS A 106 VAL A 114 1 O VAL A 110 N ILE A 48 SHEET 5 AA2 6 SER A 134 ASP A 142 1 O LYS A 136 N ILE A 109 SHEET 6 AA2 6 TYR A 155 ASN A 159 1 O TYR A 155 N VAL A 139 SHEET 1 AA3 3 ALA B 8 PHE B 13 0 SHEET 2 AA3 3 ILE B 182 LEU B 185 -1 O VAL B 184 N GLU B 9 SHEET 3 AA3 3 VAL B 165 ILE B 166 -1 N ILE B 166 O VAL B 183 SHEET 1 AA4 6 VAL B 92 LEU B 96 0 SHEET 2 AA4 6 VAL B 72 SER B 81 -1 N SER B 80 O ARG B 93 SHEET 3 AA4 6 LEU B 45 LEU B 51 1 N LEU B 47 O ARG B 73 SHEET 4 AA4 6 HIS B 106 VAL B 114 1 O LEU B 108 N VAL B 46 SHEET 5 AA4 6 SER B 134 ASP B 142 1 O LYS B 136 N ILE B 109 SHEET 6 AA4 6 TYR B 155 ASN B 159 1 O TYR B 155 N VAL B 139 SHEET 1 AA5 3 ALA C 8 PHE C 13 0 SHEET 2 AA5 3 ILE C 182 LEU C 185 -1 O VAL C 184 N LYS C 10 SHEET 3 AA5 3 VAL C 165 ILE C 166 -1 N ILE C 166 O VAL C 183 SHEET 1 AA6 6 ARG C 93 LEU C 96 0 SHEET 2 AA6 6 VAL C 72 SER C 80 -1 N SER C 80 O ARG C 93 SHEET 3 AA6 6 LEU C 45 LEU C 51 1 N LEU C 51 O ILE C 77 SHEET 4 AA6 6 HIS C 106 VAL C 114 1 O LEU C 108 N VAL C 46 SHEET 5 AA6 6 SER C 134 ASP C 142 1 O LYS C 136 N ILE C 109 SHEET 6 AA6 6 TYR C 155 ASN C 159 1 O TYR C 155 N VAL C 139 SHEET 1 AA7 3 ALA D 8 PHE D 13 0 SHEET 2 AA7 3 ILE D 182 LEU D 185 -1 O VAL D 184 N LYS D 10 SHEET 3 AA7 3 VAL D 165 ILE D 166 -1 N ILE D 166 O VAL D 183 SHEET 1 AA8 6 ARG D 93 LEU D 96 0 SHEET 2 AA8 6 VAL D 72 SER D 80 -1 N SER D 80 O ARG D 93 SHEET 3 AA8 6 LEU D 45 LEU D 51 1 N LEU D 47 O ARG D 73 SHEET 4 AA8 6 HIS D 106 VAL D 114 1 O LEU D 108 N VAL D 46 SHEET 5 AA8 6 SER D 134 ASP D 142 1 O LYS D 136 N ILE D 109 SHEET 6 AA8 6 TYR D 155 ASN D 159 1 O TYR D 155 N VAL D 139 CISPEP 1 LEU A 51 LYS A 52 0 -12.25 CISPEP 2 LEU B 51 LYS B 52 0 -14.11 CISPEP 3 LEU C 51 LYS C 52 0 5.81 CISPEP 4 LEU D 51 LYS D 52 0 -7.66 CRYST1 95.667 95.667 75.685 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010453 0.006035 0.000000 0.00000 SCALE2 0.000000 0.012070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013213 0.00000