HEADER STRUCTURAL PROTEIN 19-NOV-15 5EUP TITLE STRUCTURE OF THE DROSOPHILA MELANOGASTER CP190 BTB DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROSOME-ASSOCIATED ZINC FINGER PROTEIN CP190; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-135; COMPND 5 SYNONYM: PROTEIN ENHANCER OF MOD(MDG4)4-1,DMAP190; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL RESIDUES: GSH ARE A CLONING ARTIFACT FROM COMPND 8 PLACING THE CONSTRUCT INTO PET28. THROMBIN WAS USED TO REMOVE THE N- COMPND 9 TERMINAL HIS TAG, LEAVING THE N-TERMINAL RESIDUES:GSH. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CP190, E(MOD)4-1, CG6384; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(E3) PLYSS KEYWDS BTB DOMAIN CP190 CHROMATIN INSULATOR CENTROSOME, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.PLEVOCK,B.J.GALLETTA,K.C.SLEP,N.M.RUSAN REVDAT 5 06-MAR-24 5EUP 1 REMARK REVDAT 4 04-DEC-19 5EUP 1 REMARK REVDAT 3 13-SEP-17 5EUP 1 REMARK REVDAT 2 27-JUL-16 5EUP 1 REMARK REVDAT 1 23-DEC-15 5EUP 0 JRNL AUTH K.M.PLEVOCK,B.J.GALLETTA,K.C.SLEP,N.M.RUSAN JRNL TITL NEWLY CHARACTERIZED REGION OF CP190 ASSOCIATES WITH JRNL TITL 2 MICROTUBULES AND MEDIATES PROPER SPINDLE MORPHOLOGY IN JRNL TITL 3 DROSOPHILA STEM CELLS. JRNL REF PLOS ONE V. 10 44174 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26649574 JRNL DOI 10.1371/JOURNAL.PONE.0144174 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 5958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.170 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2252 - 3.9655 0.99 1408 162 0.1906 0.2291 REMARK 3 2 3.9655 - 3.1489 0.99 1366 155 0.2328 0.2770 REMARK 3 3 3.1489 - 2.7512 0.98 1350 150 0.2625 0.2974 REMARK 3 4 2.7512 - 2.4999 0.91 1228 139 0.3167 0.3691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 994 REMARK 3 ANGLE : 0.550 1343 REMARK 3 CHIRALITY : 0.039 157 REMARK 3 PLANARITY : 0.001 169 REMARK 3 DIHEDRAL : 12.417 366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7818 -44.2628 16.2789 REMARK 3 T TENSOR REMARK 3 T11: 0.6169 T22: 1.2322 REMARK 3 T33: 0.8160 T12: -0.2934 REMARK 3 T13: 0.0070 T23: -0.3146 REMARK 3 L TENSOR REMARK 3 L11: 4.2886 L22: 8.3160 REMARK 3 L33: 4.4747 L12: 1.8811 REMARK 3 L13: -1.5250 L23: -6.1302 REMARK 3 S TENSOR REMARK 3 S11: -0.5824 S12: 1.3927 S13: -0.5545 REMARK 3 S21: -1.0227 S22: 0.3121 S23: -0.9190 REMARK 3 S31: 0.4868 S32: 0.5683 S33: 0.1920 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3383 -23.5239 2.6497 REMARK 3 T TENSOR REMARK 3 T11: 0.5174 T22: 0.8476 REMARK 3 T33: 0.6685 T12: -0.0451 REMARK 3 T13: -0.0783 T23: 0.1165 REMARK 3 L TENSOR REMARK 3 L11: 7.6097 L22: 8.2841 REMARK 3 L33: 5.8382 L12: 4.6498 REMARK 3 L13: -1.2334 L23: 4.2660 REMARK 3 S TENSOR REMARK 3 S11: 0.3092 S12: 0.3417 S13: 1.0261 REMARK 3 S21: -0.1574 S22: -0.2657 S23: 1.0574 REMARK 3 S31: -0.0463 S32: -1.2661 S33: -0.1542 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7164 -31.9917 0.2327 REMARK 3 T TENSOR REMARK 3 T11: 0.5997 T22: 0.6406 REMARK 3 T33: 0.4548 T12: -0.0735 REMARK 3 T13: -0.0777 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 8.0801 L22: 5.4002 REMARK 3 L33: 5.0553 L12: 1.9964 REMARK 3 L13: -4.8946 L23: 0.6532 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.3940 S13: -0.2112 REMARK 3 S21: -0.2267 S22: 0.1508 S23: -0.1766 REMARK 3 S31: -0.0233 S32: 0.0306 S33: -0.1881 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98038 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.223 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.8_1069 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL CONDITION = 1 ML OF 20% PEG 3350 REMARK 280 (W/V), 160 MM AMMONIUM CITRATE DIBASIC. THE INITIAL HANGING DROP REMARK 280 CONTAINED 2 MICRO LITERS OF THE MOTHER LIQUOR PLUS 2 MICRO REMARK 280 LITERS OF 15 MG/ML CP190 BTB DOMAIN., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.80067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.40033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.40033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.80067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.80067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 122 REMARK 465 ARG A 123 REMARK 465 ARG A 124 REMARK 465 THR A 125 REMARK 465 MET A 126 REMARK 465 GLU A 127 REMARK 465 ASN A 128 REMARK 465 VAL A 129 REMARK 465 ASN A 130 REMARK 465 ARG A 131 REMARK 465 GLN A 132 REMARK 465 GLN A 133 REMARK 465 ARG A 134 REMARK 465 PRO A 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 83 O HOH A 201 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 16.27 58.99 REMARK 500 PHE A 76 75.86 -117.82 REMARK 500 GLU A 120 56.48 -106.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 5EUP A 1 135 UNP Q24478 CP190_DROME 1 135 SEQADV 5EUP GLY A -2 UNP Q24478 EXPRESSION TAG SEQADV 5EUP SER A -1 UNP Q24478 EXPRESSION TAG SEQADV 5EUP HIS A 0 UNP Q24478 EXPRESSION TAG SEQRES 1 A 138 GLY SER HIS MET GLY GLU VAL LYS SER VAL LYS VAL ASP SEQRES 2 A 138 ASN TRP GLY VAL PHE PHE LEU GLN LYS LEU GLN ASN PHE SEQRES 3 A 138 PHE ASN LYS THR ASP TYR CYS ASP LEU THR LEU GLN PHE SEQRES 4 A 138 ARG ASP ASN SER GLN LEU LYS VAL HIS ARG LEU VAL LEU SEQRES 5 A 138 SER ALA CYS THR ASP TYR PHE ASN VAL LEU GLU GLN THR SEQRES 6 A 138 CYS GLU ILE VAL ASP ASP ALA LEU ILE MET PRO ASN GLU SEQRES 7 A 138 PHE GLN ALA ASP VAL VAL VAL PRO ILE VAL ASN PHE MET SEQRES 8 A 138 TYR THR GLY THR LEU GLU PHE GLU LEU LYS MET TYR GLY SEQRES 9 A 138 LYS LEU LEU ARG THR ALA LYS GLU MET ASN MET THR VAL SEQRES 10 A 138 LEU LEU LYS LEU LEU GLU ALA HIS ARG ARG THR MET GLU SEQRES 11 A 138 ASN VAL ASN ARG GLN GLN ARG PRO FORMUL 2 HOH *8(H2 O) HELIX 1 AA1 ASN A 11 LYS A 26 1 16 HELIX 2 AA2 HIS A 45 ALA A 51 1 7 HELIX 3 AA3 ASP A 54 CYS A 63 1 10 HELIX 4 AA4 GLN A 77 GLY A 91 1 15 HELIX 5 AA5 GLU A 96 LYS A 98 5 3 HELIX 6 AA6 MET A 99 ASN A 111 1 13 HELIX 7 AA7 MET A 112 GLU A 120 1 9 SHEET 1 AA1 3 GLN A 41 VAL A 44 0 SHEET 2 AA1 3 LEU A 32 GLN A 35 -1 N LEU A 32 O VAL A 44 SHEET 3 AA1 3 ALA A 69 ILE A 71 1 O LEU A 70 N GLN A 35 CRYST1 86.224 86.224 40.201 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011598 0.006696 0.000000 0.00000 SCALE2 0.000000 0.013392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024875 0.00000