HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-NOV-15 5EWK TITLE SCABIN TOXIN FROM STREPTOMYCES SCABIES IN COMPLEX WITH INHIBITOR PJ34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ADP-RIBOSYLTRANSFERASE SCABIN; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SCABIEI 87.22; SOURCE 3 ORGANISM_TAXID: 680198; SOURCE 4 STRAIN: 87.22; SOURCE 5 GENE: SCAB_27771; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.RAVULAPALLI,B.LYONS,A.R.MERRILL REVDAT 6 23-OCT-24 5EWK 1 REMARK REVDAT 5 27-SEP-23 5EWK 1 REMARK REVDAT 4 22-NOV-17 5EWK 1 JRNL REMARK REVDAT 3 08-JUN-16 5EWK 1 JRNL REVDAT 2 06-APR-16 5EWK 1 JRNL REVDAT 1 23-MAR-16 5EWK 0 JRNL AUTH B.LYONS,R.RAVULAPALLI,J.LANOUE,M.R.LUGO,D.DUTTA,S.CARLIN, JRNL AUTH 2 A.R.MERRILL JRNL TITL SCABIN, A NOVEL DNA-ACTING ADP-RIBOSYLTRANSFERASE FROM JRNL TITL 2 STREPTOMYCES SCABIES. JRNL REF J.BIOL.CHEM. V. 291 11198 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27002155 JRNL DOI 10.1074/JBC.M115.707653 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0349 - 3.3277 1.00 2809 148 0.1342 0.1531 REMARK 3 2 3.3277 - 2.6414 1.00 2749 145 0.1538 0.1794 REMARK 3 3 2.6414 - 2.3075 1.00 2759 145 0.1551 0.1706 REMARK 3 4 2.3075 - 2.0966 1.00 2745 145 0.1582 0.2140 REMARK 3 5 2.0966 - 1.9463 0.99 2730 144 0.1594 0.1886 REMARK 3 6 1.9463 - 1.8315 1.00 2724 142 0.1591 0.1875 REMARK 3 7 1.8315 - 1.7398 1.00 2726 144 0.1845 0.2274 REMARK 3 8 1.7398 - 1.6641 1.00 2730 144 0.2127 0.2386 REMARK 3 9 1.6641 - 1.6000 1.00 2721 143 0.2433 0.2536 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1397 REMARK 3 ANGLE : 1.049 1918 REMARK 3 CHIRALITY : 0.060 195 REMARK 3 PLANARITY : 0.007 252 REMARK 3 DIHEDRAL : 14.129 819 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5922 38.4320 2.6657 REMARK 3 T TENSOR REMARK 3 T11: 0.5341 T22: 0.6474 REMARK 3 T33: 0.4142 T12: 0.0949 REMARK 3 T13: 0.1603 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 5.8425 L22: 2.4195 REMARK 3 L33: 8.9914 L12: 2.8048 REMARK 3 L13: 7.2035 L23: 3.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.4147 S12: 1.2086 S13: 0.1563 REMARK 3 S21: -0.0684 S22: -0.0195 S23: -0.1486 REMARK 3 S31: -0.4973 S32: 0.8222 S33: -0.4238 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1224 34.1387 9.5777 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.3933 REMARK 3 T33: 0.2005 T12: 0.0005 REMARK 3 T13: -0.0507 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 3.0172 L22: 2.1295 REMARK 3 L33: 1.9401 L12: -0.9768 REMARK 3 L13: -0.5015 L23: 0.3449 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.6890 S13: 0.0330 REMARK 3 S21: -0.3575 S22: -0.0904 S23: 0.3298 REMARK 3 S31: -0.0445 S32: -0.5907 S33: 0.0067 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0052 39.1150 18.0426 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.3486 REMARK 3 T33: 0.2411 T12: 0.0643 REMARK 3 T13: -0.0074 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 6.0056 L22: 3.2886 REMARK 3 L33: 1.8694 L12: -2.2629 REMARK 3 L13: 0.1660 L23: 1.9323 REMARK 3 S TENSOR REMARK 3 S11: -0.1881 S12: -0.0599 S13: 0.2592 REMARK 3 S21: 0.0876 S22: 0.0514 S23: 0.3556 REMARK 3 S31: -0.2797 S32: -0.6672 S33: 0.1784 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5459 33.4722 23.6932 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.1893 REMARK 3 T33: 0.1555 T12: 0.0139 REMARK 3 T13: -0.0186 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.9862 L22: 6.9162 REMARK 3 L33: 3.7498 L12: -2.0084 REMARK 3 L13: 1.0855 L23: -3.4128 REMARK 3 S TENSOR REMARK 3 S11: -0.2144 S12: -0.2217 S13: 0.0157 REMARK 3 S21: 0.3125 S22: 0.1888 S23: -0.0618 REMARK 3 S31: 0.0414 S32: -0.2069 S33: 0.0842 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5885 29.9630 18.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.2092 REMARK 3 T33: 0.1662 T12: -0.0220 REMARK 3 T13: 0.0411 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.5273 L22: 3.4027 REMARK 3 L33: 0.0100 L12: -0.4968 REMARK 3 L13: -0.0893 L23: -0.1024 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.0825 S13: -0.1714 REMARK 3 S21: 0.3729 S22: 0.0430 S23: 0.3876 REMARK 3 S31: -0.0791 S32: -0.2368 S33: -0.0163 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8381 47.5203 20.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.4009 T22: 0.2564 REMARK 3 T33: 0.3534 T12: 0.0429 REMARK 3 T13: -0.0004 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.0672 L22: 6.4196 REMARK 3 L33: 3.4229 L12: -1.0981 REMARK 3 L13: -2.0039 L23: -2.8505 REMARK 3 S TENSOR REMARK 3 S11: 0.1267 S12: -0.1994 S13: 0.6002 REMARK 3 S21: 0.7435 S22: 0.0005 S23: -0.1114 REMARK 3 S31: -1.2323 S32: 0.1198 S33: -0.1197 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9070 31.8175 13.4865 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1873 REMARK 3 T33: 0.1039 T12: -0.0355 REMARK 3 T13: 0.0143 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.3081 L22: 5.3124 REMARK 3 L33: 1.9908 L12: -1.6169 REMARK 3 L13: -0.5294 L23: -0.5413 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.3571 S13: -0.0911 REMARK 3 S21: -0.1611 S22: -0.0628 S23: 0.1663 REMARK 3 S31: 0.0912 S32: -0.3308 S33: 0.0533 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7339 21.9584 28.7884 REMARK 3 T TENSOR REMARK 3 T11: 0.3865 T22: 0.2756 REMARK 3 T33: 0.2454 T12: 0.0193 REMARK 3 T13: 0.0843 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 4.1529 L22: 2.6199 REMARK 3 L33: 6.8170 L12: 1.0157 REMARK 3 L13: 3.1812 L23: 0.5916 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -0.7964 S13: -0.2354 REMARK 3 S21: 0.5710 S22: -0.0477 S23: 0.1368 REMARK 3 S31: 0.2440 S32: -0.7202 S33: 0.1082 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1358 23.4562 6.6345 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2403 REMARK 3 T33: 0.1996 T12: -0.0253 REMARK 3 T13: 0.0441 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 4.1436 L22: 8.4552 REMARK 3 L33: 4.8426 L12: -0.1698 REMARK 3 L13: 1.2332 L23: -2.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.5880 S13: -0.2793 REMARK 3 S21: -0.9042 S22: -0.0193 S23: 0.1272 REMARK 3 S31: 0.5648 S32: -0.3511 S33: 0.1651 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 37.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : 0.02000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 5DAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.5, 15% W/V PEG400, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.73500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 479 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 GLN A 26 REMARK 465 THR A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 SER A 34 REMARK 465 ALA A 35 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 130 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 183 O HOH A 404 1.53 REMARK 500 HH21 ARG A 168 O HOH A 403 1.55 REMARK 500 O HOH A 446 O HOH A 471 1.93 REMARK 500 O HOH A 514 O HOH A 536 2.12 REMARK 500 O HOH A 470 O HOH A 532 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 130 O - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 64 -177.21 -68.91 REMARK 500 CYS A 72 35.68 -146.60 REMARK 500 LYS A 130 16.83 56.69 REMARK 500 VAL A 159 61.98 35.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 543 DISTANCE = 6.31 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P34 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EWY RELATED DB: PDB DBREF 5EWK A 1 200 UNP C9Z6T8 C9Z6T8_STRSW 1 200 SEQRES 1 A 200 MET ARG ARG ARG ALA ALA ALA VAL VAL LEU SER LEU SER SEQRES 2 A 200 ALA VAL LEU ALA THR SER ALA ALA THR ALA PRO ALA GLN SEQRES 3 A 200 THR PRO THR ALA THR ALA THR SER ALA LYS ALA ALA ALA SEQRES 4 A 200 PRO ALA CYS PRO ARG PHE ASP ASP PRO VAL HIS ALA ALA SEQRES 5 A 200 ALA ASP PRO ARG VAL ASP VAL GLU ARG ILE THR PRO ASP SEQRES 6 A 200 PRO VAL TRP ARG THR THR CYS GLY THR LEU TYR ARG SER SEQRES 7 A 200 ASP SER ARG GLY PRO ALA VAL VAL PHE GLU GLN GLY PHE SEQRES 8 A 200 LEU PRO LYS ASP VAL ILE ASP GLY GLN TYR ASP ILE GLU SEQRES 9 A 200 SER TYR VAL LEU VAL ASN GLN PRO SER PRO TYR VAL SER SEQRES 10 A 200 THR THR TYR ASP HIS ASP LEU TYR LYS THR TRP TYR LYS SEQRES 11 A 200 SER GLY TYR ASN TYR TYR ILE ASP ALA PRO GLY GLY VAL SEQRES 12 A 200 ASP VAL ASN LYS THR ILE GLY ASP ARG HIS LYS TRP ALA SEQRES 13 A 200 ASP GLN VAL GLU VAL ALA PHE PRO GLY GLY ILE ARG THR SEQRES 14 A 200 GLU PHE VAL ILE GLY VAL CYS PRO VAL ASP LYS LYS THR SEQRES 15 A 200 ARG THR GLU LYS MET SER GLU CYS VAL GLY ASN PRO HIS SEQRES 16 A 200 TYR GLU PRO TRP HIS HET P34 A 301 39 HETNAM P34 N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6- HETNAM 2 P34 DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE FORMUL 2 P34 C17 H17 N3 O2 FORMUL 3 HOH *143(H2 O) HELIX 1 AA1 ASP A 58 ILE A 62 5 5 HELIX 2 AA2 GLY A 82 GLY A 90 1 9 HELIX 3 AA3 ASP A 102 VAL A 109 1 8 HELIX 4 AA4 ASP A 123 TRP A 128 5 6 HELIX 5 AA5 VAL A 145 GLY A 150 1 6 HELIX 6 AA6 TRP A 155 GLN A 158 5 4 HELIX 7 AA7 ARG A 168 GLU A 170 5 3 HELIX 8 AA8 MET A 187 CYS A 190 5 4 SHEET 1 AA1 4 LEU A 75 ASP A 79 0 SHEET 2 AA1 4 TYR A 133 ILE A 137 -1 O TYR A 135 N ARG A 77 SHEET 3 AA1 4 VAL A 172 ASP A 179 -1 O CYS A 176 N ASN A 134 SHEET 4 AA1 4 THR A 184 GLU A 185 -1 O THR A 184 N ASP A 179 SHEET 1 AA2 4 LEU A 75 ASP A 79 0 SHEET 2 AA2 4 TYR A 133 ILE A 137 -1 O TYR A 135 N ARG A 77 SHEET 3 AA2 4 VAL A 172 ASP A 179 -1 O CYS A 176 N ASN A 134 SHEET 4 AA2 4 VAL A 191 GLY A 192 -1 O VAL A 191 N VAL A 175 SHEET 1 AA3 3 TYR A 115 THR A 119 0 SHEET 2 AA3 3 GLU A 160 PRO A 164 -1 O PHE A 163 N VAL A 116 SHEET 3 AA3 3 VAL A 143 ASP A 144 -1 N VAL A 143 O ALA A 162 SSBOND 1 CYS A 42 CYS A 72 1555 1555 2.04 SSBOND 2 CYS A 176 CYS A 190 1555 1555 2.04 CISPEP 1 THR A 63 PRO A 64 0 -11.44 SITE 1 AC1 14 ARG A 77 SER A 78 LYS A 94 ASN A 110 SITE 2 AC1 14 SER A 117 THR A 118 LEU A 124 TRP A 128 SITE 3 AC1 14 GLN A 158 GLU A 160 HOH A 416 HOH A 428 SITE 4 AC1 14 HOH A 465 HOH A 473 CRYST1 87.470 61.180 38.030 90.00 100.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011432 0.000000 0.002094 0.00000 SCALE2 0.000000 0.016345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026732 0.00000