HEADER TRANSFERASE 24-NOV-15 5EY3 TITLE X-RAY STRUCTURE OF THE THYMIDINE PHOSPHORYLASE FROM SALMONELLA TITLE 2 TYPHIMURIUM IN COMPLEX WITH CYTIDINE AND SULPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TDRPASE; COMPND 5 EC: 2.4.2.4; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE A CHAIN CONTAINS TWO RESIDUES OF THE THROMBINE COMPND 8 RESTRICTION SITE (GLY AND SER). IN THE B CHAIN WE COULD NOT LOCALIZE COMPND 9 THOSE RESIDUES DUE TO POOR ELECTRON DENSITY MAP OF THE N-TERMINAL COMPND 10 RESIDUES. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / SOURCE 3 ATCC 700720); SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 GENE: DEOA, STM4568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THYMIDINE PHOSPHORYLASE, NUCLEOSIDE, METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,C.BETZEL,A.M.MIKHAILOV REVDAT 3 10-JAN-24 5EY3 1 REMARK REVDAT 2 13-SEP-17 5EY3 1 REMARK REVDAT 1 07-DEC-16 5EY3 0 JRNL AUTH V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,C.BETZEL, JRNL AUTH 2 A.M.MIKHAILOV JRNL TITL X-RAY STRUCTURE OF THE THYMIDINE PHOSPHORYLASE FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM IN COMPLEX WITH CYTIDINE AND SULPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 80103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 3856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3058 - 5.7809 1.00 2994 151 0.1655 0.2048 REMARK 3 2 5.7809 - 4.5896 1.00 2948 135 0.1592 0.2146 REMARK 3 3 4.5896 - 4.0098 1.00 2912 155 0.1427 0.1879 REMARK 3 4 4.0098 - 3.6433 1.00 2851 171 0.1679 0.1855 REMARK 3 5 3.6433 - 3.3822 1.00 2887 126 0.1758 0.2175 REMARK 3 6 3.3822 - 3.1829 1.00 2904 138 0.1894 0.2282 REMARK 3 7 3.1829 - 3.0235 1.00 2902 134 0.2065 0.2095 REMARK 3 8 3.0235 - 2.8919 1.00 2867 128 0.2046 0.2396 REMARK 3 9 2.8919 - 2.7806 1.00 2887 151 0.1996 0.2201 REMARK 3 10 2.7806 - 2.6846 1.00 2862 140 0.1993 0.2403 REMARK 3 11 2.6846 - 2.6007 1.00 2880 156 0.1996 0.2226 REMARK 3 12 2.6007 - 2.5264 1.00 2817 157 0.2031 0.2431 REMARK 3 13 2.5264 - 2.4598 1.00 2853 151 0.1965 0.2368 REMARK 3 14 2.4598 - 2.3998 1.00 2885 143 0.2042 0.2286 REMARK 3 15 2.3998 - 2.3453 1.00 2857 140 0.2128 0.2387 REMARK 3 16 2.3453 - 2.2954 1.00 2837 163 0.2109 0.2660 REMARK 3 17 2.2954 - 2.2495 0.91 517 31 0.2320 0.3036 REMARK 3 18 2.2495 - 2.2070 0.93 1219 51 0.2407 0.2725 REMARK 3 19 2.2070 - 2.1676 1.00 2836 138 0.2286 0.2867 REMARK 3 20 2.1676 - 2.1309 1.00 2825 161 0.2345 0.3012 REMARK 3 21 2.1309 - 2.0965 1.00 2888 146 0.2390 0.2746 REMARK 3 22 2.0965 - 2.0642 1.00 2828 141 0.2449 0.2877 REMARK 3 23 2.0642 - 2.0339 1.00 2868 129 0.2450 0.2963 REMARK 3 24 2.0339 - 2.0052 1.00 2833 155 0.2613 0.3254 REMARK 3 25 2.0052 - 1.9781 1.00 2843 148 0.2726 0.3218 REMARK 3 26 1.9781 - 1.9524 1.00 2865 137 0.3034 0.3269 REMARK 3 27 1.9524 - 1.9280 0.98 2789 134 0.4379 0.4674 REMARK 3 28 1.9280 - 1.9048 0.98 2793 146 0.5655 0.5877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6743 REMARK 3 ANGLE : 0.785 9121 REMARK 3 CHIRALITY : 0.049 1055 REMARK 3 PLANARITY : 0.005 1182 REMARK 3 DIHEDRAL : 16.768 4057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80208 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.905 REMARK 200 RESOLUTION RANGE LOW (A) : 136.753 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.20700 REMARK 200 R SYM FOR SHELL (I) : 1.20700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, 1.6 M AMMONIUM SULFATE, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 96.69900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.69900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.10400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 96.69900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.69900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.10400 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 96.69900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 96.69900 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 29.10400 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 96.69900 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 96.69900 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.10400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 1 CG SD CE REMARK 470 PHE B 2 CG CD1 CD2 CE1 CE2 CZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 357 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 274 O HOH A 601 2.07 REMARK 500 O2 SO4 B 501 O HOH B 601 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -169.36 70.03 REMARK 500 SER A 113 -158.74 -132.90 REMARK 500 ARG A 115 -161.10 -100.99 REMARK 500 LEU A 117 64.08 69.45 REMARK 500 HIS A 119 -42.58 138.45 REMARK 500 GLN A 156 87.69 -69.06 REMARK 500 ASN A 252 -79.76 -124.12 REMARK 500 ALA A 400 162.87 177.29 REMARK 500 TYR A 435 -115.91 -102.55 REMARK 500 ASP B 50 -165.14 64.33 REMARK 500 ASN B 76 73.59 31.98 REMARK 500 SER B 113 -153.65 -117.02 REMARK 500 SER B 159 35.05 -97.23 REMARK 500 ASN B 252 -77.46 -122.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XR5 RELATED DB: PDB REMARK 900 4XR5 CONTAINS THE SAME PROTEIM IN THE UNLIGANDED STATE DBREF 5EY3 A 1 440 UNP Q7CP66 TYPH_SALTY 1 440 DBREF 5EY3 B 1 440 UNP Q7CP66 TYPH_SALTY 1 440 SEQADV 5EY3 GLY A -1 UNP Q7CP66 EXPRESSION TAG SEQADV 5EY3 SER A 0 UNP Q7CP66 EXPRESSION TAG SEQADV 5EY3 GLY B -1 UNP Q7CP66 EXPRESSION TAG SEQADV 5EY3 SER B 0 UNP Q7CP66 EXPRESSION TAG SEQRES 1 A 442 GLY SER MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS SEQRES 2 A 442 ARG ASP GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE SEQRES 3 A 442 PHE ILE ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY SEQRES 4 A 442 GLN ILE ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP SEQRES 5 A 442 MET THR MET PRO GLU ARG VAL SER LEU THR MET ALA MET SEQRES 6 A 442 ARG ASP SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN SEQRES 7 A 442 LEU ASN GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY SEQRES 8 A 442 VAL GLY ASP VAL THR SER LEU MET LEU GLY PRO MET VAL SEQRES 9 A 442 ALA ALA CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG SEQRES 10 A 442 GLY LEU GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU SEQRES 11 A 442 ALA ILE PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG SEQRES 12 A 442 PHE ARG GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE SEQRES 13 A 442 GLY GLN THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE SEQRES 14 A 442 TYR ALA THR ARG ASP ILE THR ALA THR VAL ASP SER ILE SEQRES 15 A 442 PRO LEU ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA SEQRES 16 A 442 GLU GLY LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SEQRES 17 A 442 SER GLY ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA SEQRES 18 A 442 LEU ALA GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY SEQRES 19 A 442 VAL ARG THR THR ALA LEU LEU THR ASP MET ASN GLN VAL SEQRES 20 A 442 LEU ALA SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU SEQRES 21 A 442 ALA VAL GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG SEQRES 22 A 442 LEU PHE ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU SEQRES 23 A 442 ILE SER GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG SEQRES 24 A 442 ALA LYS LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA SEQRES 25 A 442 GLU VAL PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SEQRES 26 A 442 SER ASP PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR SEQRES 27 A 442 ALA MET LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY SEQRES 28 A 442 PHE ILE SER ALA MET ASP THR ARG ALA LEU GLY MET ALA SEQRES 29 A 442 VAL VAL SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP SEQRES 30 A 442 THR ILE ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG SEQRES 31 A 442 LEU GLY ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL SEQRES 32 A 442 ILE HIS ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA SEQRES 33 A 442 LYS ALA VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA SEQRES 34 A 442 PRO ALA SER THR PRO SER VAL TYR ARG ARG ILE THR GLU SEQRES 1 B 442 GLY SER MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS SEQRES 2 B 442 ARG ASP GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE SEQRES 3 B 442 PHE ILE ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY SEQRES 4 B 442 GLN ILE ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP SEQRES 5 B 442 MET THR MET PRO GLU ARG VAL SER LEU THR MET ALA MET SEQRES 6 B 442 ARG ASP SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN SEQRES 7 B 442 LEU ASN GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY SEQRES 8 B 442 VAL GLY ASP VAL THR SER LEU MET LEU GLY PRO MET VAL SEQRES 9 B 442 ALA ALA CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG SEQRES 10 B 442 GLY LEU GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU SEQRES 11 B 442 ALA ILE PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG SEQRES 12 B 442 PHE ARG GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE SEQRES 13 B 442 GLY GLN THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE SEQRES 14 B 442 TYR ALA THR ARG ASP ILE THR ALA THR VAL ASP SER ILE SEQRES 15 B 442 PRO LEU ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA SEQRES 16 B 442 GLU GLY LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SEQRES 17 B 442 SER GLY ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA SEQRES 18 B 442 LEU ALA GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY SEQRES 19 B 442 VAL ARG THR THR ALA LEU LEU THR ASP MET ASN GLN VAL SEQRES 20 B 442 LEU ALA SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU SEQRES 21 B 442 ALA VAL GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG SEQRES 22 B 442 LEU PHE ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU SEQRES 23 B 442 ILE SER GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG SEQRES 24 B 442 ALA LYS LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA SEQRES 25 B 442 GLU VAL PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SEQRES 26 B 442 SER ASP PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR SEQRES 27 B 442 ALA MET LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY SEQRES 28 B 442 PHE ILE SER ALA MET ASP THR ARG ALA LEU GLY MET ALA SEQRES 29 B 442 VAL VAL SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP SEQRES 30 B 442 THR ILE ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG SEQRES 31 B 442 LEU GLY ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL SEQRES 32 B 442 ILE HIS ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA SEQRES 33 B 442 LYS ALA VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA SEQRES 34 B 442 PRO ALA SER THR PRO SER VAL TYR ARG ARG ILE THR GLU HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET GOL A 506 6 HET EDO A 507 4 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET GOL B 505 6 HET CTN B 506 17 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CTN 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN CTN CYTIDINE FORMUL 3 SO4 9(O4 S 2-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 9 EDO C2 H6 O2 FORMUL 15 CTN C9 H13 N3 O5 FORMUL 16 HOH *251(H2 O) HELIX 1 AA1 GLY A -1 ASP A 13 1 15 HELIX 2 AA2 SER A 18 ASP A 31 1 14 HELIX 3 AA3 SER A 35 ASP A 50 1 16 HELIX 4 AA4 THR A 52 SER A 66 1 15 HELIX 5 AA5 TRP A 72 ASN A 76 5 5 HELIX 6 AA6 VAL A 93 CYS A 105 1 13 HELIX 7 AA7 GLY A 122 GLU A 128 1 7 HELIX 8 AA8 ASP A 138 VAL A 149 1 12 HELIX 9 AA9 PRO A 162 ASP A 172 1 11 HELIX 10 AB1 SER A 179 ALA A 193 1 15 HELIX 11 AB2 THR A 213 ALA A 231 1 19 HELIX 12 AB3 ASN A 252 GLY A 265 1 14 HELIX 13 AB4 ASN A 269 GLY A 287 1 19 HELIX 14 AB5 ASP A 292 ASN A 306 1 15 HELIX 15 AB6 GLY A 307 GLN A 320 1 14 HELIX 16 AB7 ASP A 325 LEU A 334 1 10 HELIX 17 AB8 ASP A 355 MET A 366 1 12 HELIX 18 AB9 ASP A 406 ALA A 420 1 15 HELIX 19 AC1 PHE B 2 ASP B 13 1 12 HELIX 20 AC2 SER B 18 ASP B 31 1 14 HELIX 21 AC3 SER B 35 ASP B 50 1 16 HELIX 22 AC4 THR B 52 ASP B 65 1 14 HELIX 23 AC5 TRP B 72 ASN B 76 5 5 HELIX 24 AC6 VAL B 93 CYS B 105 1 13 HELIX 25 AC7 GLY B 122 GLU B 128 1 7 HELIX 26 AC8 ASP B 138 VAL B 149 1 12 HELIX 27 AC9 PRO B 162 ASP B 172 1 11 HELIX 28 AD1 SER B 179 ALA B 193 1 15 HELIX 29 AD2 THR B 213 ALA B 231 1 19 HELIX 30 AD3 ASN B 252 GLY B 265 1 14 HELIX 31 AD4 ASN B 269 GLY B 287 1 19 HELIX 32 AD5 ASP B 292 ASN B 306 1 15 HELIX 33 AD6 GLY B 307 GLN B 320 1 14 HELIX 34 AD7 ASN B 329 LEU B 334 1 6 HELIX 35 AD8 ASP B 355 GLY B 367 1 13 HELIX 36 AD9 ASP B 406 ALA B 420 1 15 SHEET 1 AA1 4 VAL A 82 SER A 86 0 SHEET 2 AA1 4 ALA A 198 VAL A 205 1 O ASP A 202 N HIS A 85 SHEET 3 AA1 4 ARG A 234 ASP A 241 1 O LEU A 238 N VAL A 203 SHEET 4 AA1 4 VAL A 434 ILE A 438 -1 O TYR A 435 N LEU A 239 SHEET 1 AA2 2 VAL A 109 ILE A 112 0 SHEET 2 AA2 2 VAL A 151 ILE A 154 1 O ILE A 154 N MET A 111 SHEET 1 AA3 4 ALA A 250 GLY A 251 0 SHEET 2 AA3 4 GLY A 382 THR A 384 -1 O PHE A 383 N ALA A 250 SHEET 3 AA3 4 ALA A 400 ALA A 404 -1 O HIS A 403 N GLY A 382 SHEET 4 AA3 4 LEU A 339 VAL A 343 -1 N LEU A 339 O ALA A 404 SHEET 1 AA4 3 SER A 392 ILE A 393 0 SHEET 2 AA4 3 GLY A 349 MET A 354 -1 N GLY A 349 O ILE A 393 SHEET 3 AA4 3 ILE A 421 ASP A 424 -1 O ASP A 424 N PHE A 350 SHEET 1 AA5 4 VAL B 82 SER B 86 0 SHEET 2 AA5 4 ALA B 198 VAL B 205 1 O ASP B 202 N HIS B 85 SHEET 3 AA5 4 ARG B 234 ASP B 241 1 O LEU B 238 N MET B 201 SHEET 4 AA5 4 VAL B 434 ILE B 438 -1 O TYR B 435 N LEU B 239 SHEET 1 AA6 2 VAL B 109 ILE B 112 0 SHEET 2 AA6 2 VAL B 151 ILE B 154 1 O ILE B 154 N MET B 111 SHEET 1 AA7 4 ALA B 250 GLY B 251 0 SHEET 2 AA7 4 GLY B 382 THR B 384 -1 O PHE B 383 N ALA B 250 SHEET 3 AA7 4 ALA B 400 ALA B 404 -1 O HIS B 403 N GLY B 382 SHEET 4 AA7 4 LEU B 339 VAL B 343 -1 N LEU B 339 O ALA B 404 SHEET 1 AA8 2 PHE B 350 MET B 354 0 SHEET 2 AA8 2 ILE B 421 ASP B 424 -1 O ASP B 424 N PHE B 350 SITE 1 AC1 8 ARG A 9 ARG A 12 HOH A 633 HOH A 652 SITE 2 AC1 8 ALA B 175 THR B 176 VAL B 177 ASP B 178 SITE 1 AC2 3 HIS A 15 ALA A 16 HOH A 654 SITE 1 AC3 7 ALA A 175 THR A 176 VAL A 177 ASP A 178 SITE 2 AC3 7 HOH A 641 ARG B 9 ARG B 12 SITE 1 AC4 5 SER A 113 GLY A 114 GLY A 122 THR A 123 SITE 2 AC4 5 HOH A 646 SITE 1 AC5 4 HIS A 15 ARG A 141 LYS A 321 HOH A 604 SITE 1 AC6 6 TYR A 214 GLU A 215 GLU A 218 ARG A 268 SITE 2 AC6 6 PHE A 273 GLN A 301 SITE 1 AC7 3 PRO A 80 GLY A 287 GLN A 288 SITE 1 AC8 7 LYS B 84 SER B 86 SER B 95 SER B 113 SITE 2 AC8 7 THR B 123 HOH B 601 HOH B 636 SITE 1 AC9 3 TYR B 267 PRO B 270 ARG B 388 SITE 1 AD1 4 PRO B 270 ARG B 271 ARG B 388 HOH B 630 SITE 1 AD2 2 ARG B 23 ASN B 27 SITE 1 AD3 2 ARG B 268 GLN B 301 SITE 1 AD4 9 ARG A 115 GLU A 128 ALA A 373 ASP A 375 SITE 2 AD4 9 ASP B 50 ARG B 56 ILE B 180 ALA B 219 SITE 3 AD4 9 GLU B 222 CRYST1 193.398 193.398 58.208 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005171 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017180 0.00000