HEADER TRANSFERASE 25-NOV-15 5EYN TITLE CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN TITLE 2 FRUCTOSE, ADP, BERYLLIUM TRIFLUORIDE AND CALCIUM ION BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: CSCK, VC0395_0600; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE, KINASE, FRUCTOSE EXPDTA X-RAY DIFFRACTION AUTHOR R.PAUL,S.NATH,U.SEN REVDAT 3 08-NOV-23 5EYN 1 HETSYN REVDAT 2 29-JUL-20 5EYN 1 COMPND JRNL REMARK HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 30-NOV-16 5EYN 0 JRNL AUTH R.PAUL,S.NATH,U.SEN JRNL TITL CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 JRNL TITL 2 IN APO FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.PAUL,S.NATH,U.SEN REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY ANALYSIS OF A FRUCTOKINASE FROM VIBRIO REMARK 1 TITL 3 CHOLERAE O395 REMARK 1 REF ACTA CRYSTALLOGR. SECT. F V. 68 1564 2012 REMARK 1 REF 2 STRUCT. BIOL. CRYST. COMMUN. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 23192049 REMARK 1 DOI 10.1107/S1744309112047598 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 71921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1600 - 3.8178 0.88 2547 134 0.1689 0.1609 REMARK 3 2 3.8178 - 3.0311 0.92 2553 142 0.1387 0.1779 REMARK 3 3 3.0311 - 2.6481 0.94 2581 137 0.1441 0.1503 REMARK 3 4 2.6481 - 2.4061 0.96 2593 138 0.1303 0.1514 REMARK 3 5 2.4061 - 2.2337 0.97 2632 120 0.1304 0.1462 REMARK 3 6 2.2337 - 2.1020 0.98 2619 162 0.1170 0.1596 REMARK 3 7 2.1020 - 1.9968 0.99 2658 142 0.1190 0.1486 REMARK 3 8 1.9968 - 1.9099 0.99 2658 122 0.1173 0.1553 REMARK 3 9 1.9099 - 1.8363 0.99 2661 140 0.1184 0.1676 REMARK 3 10 1.8363 - 1.7730 0.99 2653 150 0.1224 0.1425 REMARK 3 11 1.7730 - 1.7175 0.99 2628 146 0.1241 0.1685 REMARK 3 12 1.7175 - 1.6684 1.00 2636 135 0.1206 0.1753 REMARK 3 13 1.6684 - 1.6245 1.00 2689 123 0.1150 0.1693 REMARK 3 14 1.6245 - 1.5849 1.00 2657 149 0.1165 0.1649 REMARK 3 15 1.5849 - 1.5489 1.00 2653 129 0.1250 0.1865 REMARK 3 16 1.5489 - 1.5159 1.00 2681 142 0.1317 0.2011 REMARK 3 17 1.5159 - 1.4856 1.00 2601 155 0.1480 0.1990 REMARK 3 18 1.4856 - 1.4575 1.00 2659 147 0.1684 0.2045 REMARK 3 19 1.4575 - 1.4315 1.00 2627 143 0.1609 0.2165 REMARK 3 20 1.4315 - 1.4072 1.00 2655 155 0.1538 0.1965 REMARK 3 21 1.4072 - 1.3845 1.00 2644 121 0.1604 0.2132 REMARK 3 22 1.3845 - 1.3632 1.00 2642 145 0.1667 0.2088 REMARK 3 23 1.3632 - 1.3432 1.00 2615 138 0.1981 0.2348 REMARK 3 24 1.3432 - 1.3243 1.00 2687 153 0.2306 0.2881 REMARK 3 25 1.3243 - 1.3064 1.00 2612 124 0.2575 0.2938 REMARK 3 26 1.3064 - 1.2894 0.93 2466 122 0.2976 0.3069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2433 REMARK 3 ANGLE : 1.374 3336 REMARK 3 CHIRALITY : 0.069 375 REMARK 3 PLANARITY : 0.007 427 REMARK 3 DIHEDRAL : 14.012 852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.289 REMARK 200 RESOLUTION RANGE LOW (A) : 32.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TZ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 6000, 0.1M MES, PH 6.0 AS REMARK 280 PRECIPITANT AND VCFK (COMPLEX WITH 5 MM ADP + 5 MM FRUCTOSE ) + REMARK 280 5 MM BEF3 (SOAKED), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.60900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.60900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.30000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 785 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 817 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 HIS A 11 REMARK 465 ILE A 12 REMARK 465 PHE A 13 REMARK 465 ARG A 14 REMARK 465 SER A 15 REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 265 O1B ADP A 404 1.47 REMARK 500 O2B ADP A 404 O HOH A 501 1.84 REMARK 500 F1 BEF A 403 O1B ADP A 404 2.02 REMARK 500 O HOH A 692 O HOH A 812 2.09 REMARK 500 O HOH A 834 O HOH A 860 2.09 REMARK 500 O HOH A 512 O HOH A 703 2.09 REMARK 500 O HOH A 574 O HOH A 758 2.10 REMARK 500 O HOH A 823 O HOH A 833 2.12 REMARK 500 O HOH A 504 O HOH A 730 2.13 REMARK 500 OG SER A 19 O HOH A 502 2.13 REMARK 500 O HOH A 805 O HOH A 829 2.14 REMARK 500 O HOH A 821 O HOH A 872 2.15 REMARK 500 O HOH A 766 O HOH A 811 2.15 REMARK 500 O HOH A 536 O HOH A 707 2.15 REMARK 500 O HOH A 782 O HOH A 848 2.17 REMARK 500 O HOH A 561 O HOH A 773 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 778 O HOH A 788 1556 2.12 REMARK 500 O HOH A 514 O HOH A 864 1556 2.12 REMARK 500 O HOH A 840 O HOH A 848 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 82.45 -153.21 REMARK 500 SER A 58 17.79 80.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 879 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 174 OD1 REMARK 620 2 HOH A 501 O 171.1 REMARK 620 3 HOH A 566 O 93.3 94.6 REMARK 620 4 HOH A 607 O 89.5 95.8 81.3 REMARK 620 5 HOH A 619 O 77.9 98.7 84.4 160.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 302 O REMARK 620 2 GLN A 305 O 99.1 REMARK 620 3 GLY A 307 O 153.5 106.7 REMARK 620 4 HOH A 609 O 86.1 95.1 97.4 REMARK 620 5 HOH A 655 O 70.2 133.0 87.4 127.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 403 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 404 O1B REMARK 620 2 BEF A 403 F1 73.3 REMARK 620 3 BEF A 403 F2 83.2 113.5 REMARK 620 4 BEF A 403 F3 170.9 111.3 101.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EY7 RELATED DB: PDB REMARK 900 5EY7 CONTAINS THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 5F11 RELATED DB: PDB REMARK 900 RELATED ID: 5F0Z RELATED DB: PDB DBREF1 5EYN A 1 323 UNP A0A0H3AER7_VIBC3 DBREF2 5EYN A A0A0H3AER7 1 323 SEQRES 1 A 323 MET LYS ALA LEU VAL ARG LEU SER SER ASN HIS ILE PHE SEQRES 2 A 323 ARG SER ASP SER MET SER ARG VAL TRP LEU THR GLY ASP SEQRES 3 A 323 ALA VAL VAL ASP LEU ILE PRO ASP GLY GLN GLN HIS TYR SEQRES 4 A 323 LEU LYS CYS PRO GLY GLY ALA PRO ALA ASN VAL ALA VAL SEQRES 5 A 323 ALA ILE ALA ARG LEU SER GLY ARG SER ALA PHE PHE GLY SEQRES 6 A 323 ARG VAL GLY ASN ASP PRO PHE GLY ARG PHE MET GLN GLN SEQRES 7 A 323 THR LEU THR ASP GLU GLN VAL ASP CYS GLN HIS LEU HIS SEQRES 8 A 323 PHE ASP PRO VAL HIS ARG THR SER THR VAL VAL VAL ASP SEQRES 9 A 323 LEU ASP GLU HIS GLY GLU ARG SER PHE THR PHE MET VAL SEQRES 10 A 323 LYS PRO SER ALA ASP GLN PHE LEU GLN LEU SER ASP ILE SEQRES 11 A 323 PRO SER PHE GLN LYS GLY GLU TRP LEU HIS VAL CYS SER SEQRES 12 A 323 ILE ALA LEU ALA ASN GLN PRO SER ARG SER SER THR PHE SEQRES 13 A 323 ALA ALA ILE ALA GLN MET LYS GLU VAL GLY GLY TYR VAL SEQRES 14 A 323 SER PHE ASP PRO ASN LEU ARG GLU GLU VAL TRP SER GLU SEQRES 15 A 323 PRO GLN GLU LEU GLN ALA THR VAL MET ARG ALA VAL GLY SEQRES 16 A 323 LEU ALA ASP VAL VAL LYS PHE SER GLU GLU GLU LEU GLN SEQRES 17 A 323 PHE LEU THR GLY THR GLN SER ILE GLU GLU GLY LEU GLN SEQRES 18 A 323 ALA ILE ALA ASP PHE GLN ILE PRO LEU VAL VAL VAL THR SEQRES 19 A 323 LEU GLY ALA LYS GLY ALA LEU VAL ALA THR PRO ASN SER SEQRES 20 A 323 GLN GLN ILE VAL SER GLY LYS ALA VAL LYS PRO ILE ASP SEQRES 21 A 323 THR THR GLY ALA GLY ASP ALA PHE VAL GLY GLY LEU LEU SEQRES 22 A 323 TYR ARG LEU SER VAL ALA GLN ASP TRP HIS ASN GLN ALA SEQRES 23 A 323 THR ILE LEU ASP ALA VAL LYS TRP ALA ASN GLY CYS GLY SEQRES 24 A 323 ALA LEU ALA THR THR GLN LYS GLY ALA MET THR ALA LEU SEQRES 25 A 323 PRO ASN GLN ALA ALA LEU TYR ALA PHE LEU GLU HET FRU A 401 24 HET CA A 402 1 HET BEF A 403 4 HET ADP A 404 39 HET NA A 405 1 HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM CA CALCIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM NA SODIUM ION HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 FRU C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 BEF BE F3 1- FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 NA NA 1+ FORMUL 7 HOH *379(H2 O) HELIX 1 AA1 GLY A 45 LEU A 57 1 13 HELIX 2 AA2 ASP A 70 GLU A 83 1 14 HELIX 3 AA3 HIS A 108 ARG A 111 5 4 HELIX 4 AA4 SER A 120 LEU A 125 5 6 HELIX 5 AA5 GLN A 126 ILE A 130 5 5 HELIX 6 AA6 ILE A 144 ALA A 147 5 4 HELIX 7 AA7 PRO A 150 GLY A 166 1 17 HELIX 8 AA8 ARG A 176 TRP A 180 5 5 HELIX 9 AA9 GLU A 182 GLN A 184 5 3 HELIX 10 AB1 GLU A 185 GLY A 195 1 11 HELIX 11 AB2 GLU A 204 GLY A 212 1 9 HELIX 12 AB3 SER A 215 ILE A 223 1 9 HELIX 13 AB4 ALA A 224 GLN A 227 5 4 HELIX 14 AB5 GLY A 236 LYS A 238 5 3 HELIX 15 AB6 GLY A 263 ALA A 279 1 17 HELIX 16 AB7 ASN A 284 THR A 303 1 20 HELIX 17 AB8 ASN A 314 GLU A 323 1 10 SHEET 1 AA1 9 ASP A 86 ASP A 93 0 SHEET 2 AA1 9 SER A 61 GLY A 68 1 N VAL A 67 O ASP A 93 SHEET 3 AA1 9 VAL A 21 THR A 24 1 N LEU A 23 O ALA A 62 SHEET 4 AA1 9 TRP A 138 CYS A 142 1 O TRP A 138 N TRP A 22 SHEET 5 AA1 9 TYR A 168 ASP A 172 1 O SER A 170 N LEU A 139 SHEET 6 AA1 9 VAL A 199 SER A 203 1 O VAL A 199 N PHE A 171 SHEET 7 AA1 9 LEU A 230 THR A 234 1 O THR A 234 N PHE A 202 SHEET 8 AA1 9 ALA A 240 THR A 244 -1 O ALA A 243 N VAL A 231 SHEET 9 AA1 9 SER A 247 VAL A 251 -1 O VAL A 251 N ALA A 240 SHEET 1 AA2 4 TYR A 39 GLY A 44 0 SHEET 2 AA2 4 VAL A 28 PRO A 33 -1 N ILE A 32 O LEU A 40 SHEET 3 AA2 4 SER A 99 VAL A 103 1 O VAL A 101 N LEU A 31 SHEET 4 AA2 4 PHE A 113 PHE A 115 -1 O THR A 114 N VAL A 102 LINK OD1 ASN A 174 CA CA A 402 1555 1555 2.32 LINK O ALA A 302 NA NA A 405 1555 1555 2.52 LINK O GLN A 305 NA NA A 405 1555 1555 2.23 LINK O GLY A 307 NA NA A 405 1555 1555 2.10 LINK CA CA A 402 O HOH A 501 1555 1555 2.43 LINK CA CA A 402 O HOH A 566 1555 1555 2.52 LINK CA CA A 402 O HOH A 607 1555 1555 2.37 LINK CA CA A 402 O HOH A 619 1555 1555 2.43 LINK BE BEF A 403 O1B ADP A 404 1555 1555 1.83 LINK NA NA A 405 O HOH A 609 1555 1555 1.99 LINK NA NA A 405 O HOH A 655 1555 1555 2.36 CISPEP 1 LYS A 118 PRO A 119 0 -3.45 CISPEP 2 GLN A 149 PRO A 150 0 2.45 CRYST1 64.300 107.218 41.618 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024028 0.00000