HEADER LYASE 25-NOV-15 5EYT TITLE CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM SCHISTOSOMA MANSONI TITLE 2 IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASL,ADENYLOSUCCINASE; COMPND 5 EC: 4.3.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: SMP_038030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LEMO 21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.ROMANELLO,J.R.TORINI,L.BIRD,J.NETTLESHIP,R.OWENS,Y.REDDIVARI, AUTHOR 2 J.BRANDAO-NETO,H.M.PEREIRA REVDAT 7 27-SEP-23 5EYT 1 REMARK REVDAT 6 01-JAN-20 5EYT 1 REMARK REVDAT 5 17-APR-19 5EYT 1 REMARK REVDAT 4 01-NOV-17 5EYT 1 REMARK REVDAT 3 19-APR-17 5EYT 1 JRNL REVDAT 2 12-APR-17 5EYT 1 JRNL REVDAT 1 30-NOV-16 5EYT 0 JRNL AUTH L.ROMANELLO,V.H.SERRAO,J.R.TORINI,L.E.BIRD,J.E.NETTLESHIP, JRNL AUTH 2 H.RADA,Y.REDDIVARI,R.J.OWENS,R.DEMARCO,J.BRANDAO-NETO, JRNL AUTH 3 H.D.PEREIRA JRNL TITL STRUCTURAL AND KINETIC ANALYSIS OF SCHISTOSOMA MANSONI JRNL TITL 2 ADENYLOSUCCINATE LYASE (SMADSL). JRNL REF MOL. BIOCHEM. PARASITOL. V. 214 27 2017 JRNL REFN ISSN 1872-9428 JRNL PMID 28347672 JRNL DOI 10.1016/J.MOLBIOPARA.2017.03.006 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2300 - 4.5211 0.99 2761 151 0.1625 0.1708 REMARK 3 2 4.5211 - 3.5897 1.00 2659 138 0.1528 0.2009 REMARK 3 3 3.5897 - 3.1362 0.99 2637 124 0.2003 0.2523 REMARK 3 4 3.1362 - 2.8496 0.99 2612 139 0.2233 0.2886 REMARK 3 5 2.8496 - 2.6455 1.00 2583 148 0.2365 0.2852 REMARK 3 6 2.6455 - 2.4895 1.00 2597 135 0.2457 0.3046 REMARK 3 7 2.4895 - 2.3649 1.00 2558 157 0.2489 0.2966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3829 REMARK 3 ANGLE : 0.544 5182 REMARK 3 CHIRALITY : 0.038 597 REMARK 3 PLANARITY : 0.003 656 REMARK 3 DIHEDRAL : 12.984 2343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0720 -7.8334 14.1526 REMARK 3 T TENSOR REMARK 3 T11: 0.4582 T22: 0.2817 REMARK 3 T33: 0.4777 T12: -0.0472 REMARK 3 T13: 0.0951 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 1.5133 L22: 1.3400 REMARK 3 L33: 1.9483 L12: 0.5169 REMARK 3 L13: -0.1541 L23: 0.3088 REMARK 3 S TENSOR REMARK 3 S11: 0.2873 S12: -0.2685 S13: 0.5027 REMARK 3 S21: 0.3815 S22: -0.1555 S23: 0.2184 REMARK 3 S31: -0.4034 S32: -0.0582 S33: -0.0597 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8798 -27.9592 -1.6548 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2373 REMARK 3 T33: 0.3076 T12: -0.0034 REMARK 3 T13: 0.0162 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7047 L22: 0.4548 REMARK 3 L33: 1.6766 L12: -0.0954 REMARK 3 L13: -0.1615 L23: 0.2675 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -0.0194 S13: 0.0463 REMARK 3 S21: 0.0091 S22: -0.0817 S23: 0.1464 REMARK 3 S31: -0.0291 S32: -0.1816 S33: -0.0096 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4133 -26.4699 -9.6853 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.1573 REMARK 3 T33: 0.2448 T12: 0.0072 REMARK 3 T13: -0.0006 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.2577 L22: 0.2336 REMARK 3 L33: 3.6385 L12: -0.2086 REMARK 3 L13: -0.4736 L23: 0.1454 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: 0.1709 S13: 0.1175 REMARK 3 S21: -0.0753 S22: -0.1099 S23: -0.0259 REMARK 3 S31: -0.0917 S32: 0.1458 S33: -0.0844 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2330 -35.9210 -25.2069 REMARK 3 T TENSOR REMARK 3 T11: 0.2809 T22: 0.3387 REMARK 3 T33: 0.2849 T12: 0.0257 REMARK 3 T13: 0.0063 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.4616 L22: 0.5351 REMARK 3 L33: 1.0935 L12: 0.0373 REMARK 3 L13: 0.0759 L23: 0.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 0.2012 S13: -0.0424 REMARK 3 S21: -0.1737 S22: -0.0597 S23: 0.0532 REMARK 3 S31: 0.0864 S32: -0.2142 S33: 0.0143 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0094 -44.4436 -35.8379 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.4706 REMARK 3 T33: 0.3655 T12: 0.0352 REMARK 3 T13: -0.1135 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.8567 L22: 1.3561 REMARK 3 L33: 1.3827 L12: -0.1666 REMARK 3 L13: -0.3181 L23: 0.9286 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.3149 S13: -0.2074 REMARK 3 S21: -0.2730 S22: -0.0628 S23: 0.0912 REMARK 3 S31: 0.0544 S32: -0.1694 S33: -0.0136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19416 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 35.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J91 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS BASE/BICINE, 12.5% MPD, REMARK 280 12.5% PEG1000, 12.5% PEG3350, 30MM OF EACH DIETHYLENE GLYCOL, REMARK 280 TRIETHYLENE GLYCOL, TETRAETHYLENE GLYCOL AND PENTAETHYLENE REMARK 280 GLYCOL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.23300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.55700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.14000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.23300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.55700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.14000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.23300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.55700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.14000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.23300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.55700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMER CONFIRMED BY GEL FILTRATION/DLS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -73.11400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -73.11400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1207 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ALA A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 GLU A -4 REMARK 465 VAL A -3 REMARK 465 LEU A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLN A 281 REMARK 465 ILE A 282 REMARK 465 GLY A 283 REMARK 465 SER A 284 REMARK 465 SER A 285 REMARK 465 ALA A 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLN A 208 CG CD OE1 NE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LEU A 435 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 275 O HOH A 1101 1.82 REMARK 500 NE1 TRP A 231 O HOH A 1102 1.96 REMARK 500 O LYS A 422 O HOH A 1103 1.97 REMARK 500 O HOH A 1164 O HOH A 1219 2.02 REMARK 500 O GLU A 6 O HOH A 1104 2.02 REMARK 500 OD2 ASP A 172 O HOH A 1105 2.04 REMARK 500 O LYS A 280 O HOH A 1106 2.07 REMARK 500 OE1 GLU A 42 O HOH A 1107 2.08 REMARK 500 NZ LYS A 194 O TRP A 231 2.16 REMARK 500 NH2 ARG A 131 O HOH A 1108 2.17 REMARK 500 O HOH A 1179 O HOH A 1216 2.17 REMARK 500 O PRO A 288 NH1 ARG A 291 2.18 REMARK 500 OG1 THR A 279 O HOH A 1109 2.18 REMARK 500 O HOH A 1142 O HOH A 1179 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 157 -169.38 -122.03 REMARK 500 THR A 160 -158.20 -132.71 REMARK 500 HIS A 186 -52.90 -141.24 REMARK 500 LYS A 290 87.64 -166.80 REMARK 500 LEU A 322 -120.31 54.43 REMARK 500 ARG A 324 134.70 171.38 REMARK 500 PHE A 429 32.72 -90.25 REMARK 500 LEU A 440 32.78 -98.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 1000 DBREF 5EYT A 1 480 UNP G4VQX9 G4VQX9_SCHMA 1 480 SEQADV 5EYT MET A -16 UNP G4VQX9 INITIATING METHIONINE SEQADV 5EYT ALA A -15 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT HIS A -14 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT HIS A -13 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT HIS A -12 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT HIS A -11 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT HIS A -10 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT HIS A -9 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT SER A -8 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT SER A -7 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT GLY A -6 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT LEU A -5 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT GLU A -4 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT VAL A -3 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT LEU A -2 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT PHE A -1 UNP G4VQX9 EXPRESSION TAG SEQADV 5EYT GLN A 0 UNP G4VQX9 EXPRESSION TAG SEQRES 1 A 497 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 497 VAL LEU PHE GLN MET ASP GLU PHE GLU GLU TYR ARG ASN SEQRES 3 A 497 PRO LEU THR LYS ARG TYR ALA SER ARG GLU MET VAL CYS SEQRES 4 A 497 ASN PHE GLY GLU LYS ARG LYS VAL ILE LEU TRP ARG GLN SEQRES 5 A 497 LEU TRP ILE TRP LEU ALA GLU THR GLN LYS GLU LEU GLY SEQRES 6 A 497 PHE ASP ILE THR ASP GLU GLN ILE ASN GLU MET LYS SER SEQRES 7 A 497 GLN ARG ASP SER VAL ASP PHE GLY THR ALA ALA ALA GLU SEQRES 8 A 497 GLU LYS ALA ARG ARG HIS ASP VAL MET ALA HIS VAL TYR SEQRES 9 A 497 THR PHE ALA LEU ALA CYS PRO LYS ALA ALA PRO ILE ILE SEQRES 10 A 497 HIS LEU GLY ALA THR SER CYS PHE VAL GLY ASP ASN ALA SEQRES 11 A 497 ASP LEU ILE MET LEU LYS ASP GLY LEU ASN ILE LEU LEU SEQRES 12 A 497 PRO LYS VAL ALA ARG CYS ILE ASP ARG LEU ALA LYS LYS SEQRES 13 A 497 ALA MET LEU HIS LYS SER LEU ILE CYS LEU ALA ARG THR SEQRES 14 A 497 HIS LEU GLN PRO ALA GLN PRO THR THR MET GLY ARG ARG SEQRES 15 A 497 ILE CYS MET TRP ILE GLN ASP LEU LEU LEU ASP LEU GLU SEQRES 16 A 497 ASN LEU GLU ARG LEU LYS ASN HIS THR ILE ARG PHE ARG SEQRES 17 A 497 GLY ALA LYS GLY ALA VAL GLY THR GLN ALA SER PHE MET SEQRES 18 A 497 ASP LEU PHE GLN GLY ASP HIS GLN LYS VAL ILE LYS LEU SEQRES 19 A 497 ASP GLU ILE LEU THR LYS LYS SER GLY PHE GLN ARG SER SEQRES 20 A 497 TRP CYS VAL THR GLY GLN THR TYR PRO ARG LYS VAL ASP SEQRES 21 A 497 ILE GLU ILE THR ASN ALA LEU SER ASN ILE GLY ALA THR SEQRES 22 A 497 VAL HIS LYS ILE CYS THR ASP ILE ARG LEU LEU SER SER SEQRES 23 A 497 PHE HIS GLU VAL GLU GLU PRO PHE GLU THR LYS GLN ILE SEQRES 24 A 497 GLY SER SER ALA MET PRO TYR LYS ARG ASN PRO ILE ARG SEQRES 25 A 497 SER GLU ARG ALA CYS SER LEU ALA ARG TYR LEU MET HIS SEQRES 26 A 497 ILE SER THR SER MET VAL SER THR VAL SER VAL GLN TRP SEQRES 27 A 497 LEU GLU ARG SER LEU ASP ASP SER ALA ILE ARG ARG ILE SEQRES 28 A 497 VAL LEU PRO GLU ALA PHE LEU ALA ALA ASP ALA CYS LEU SEQRES 29 A 497 THR LEU LEU GLN ASN ILE ALA GLU GLY LEU ILE VAL TYR SEQRES 30 A 497 PRO MET VAL MET GLU ALA ASN LEU ASN SER GLU LEU PRO SEQRES 31 A 497 PHE LEU VAL VAL GLU ARG ILE LEU VAL LYS MET VAL SER SEQRES 32 A 497 GLU GLY ALA ALA ASN ARG GLN GLU CYS HIS GLU ARG LEU SEQRES 33 A 497 ARG LYS HIS SER HIS GLU ALA ALA ALA GLU ILE LYS LEU SEQRES 34 A 497 LYS GLY LEU LYS ASN SER LEU MET ASP LYS LEU LEU ASN SEQRES 35 A 497 ASP TYR TYR PHE ALA PRO ILE HIS SER LEU LEU PRO THR SEQRES 36 A 497 VAL LEU ASP PRO SER TYR MET ILE GLY ARG ALA VAL GLU SEQRES 37 A 497 GLN VAL GLU VAL PHE LEU ASN THR GLU VAL ASP PRO ALA SEQRES 38 A 497 ILE HIS SER TYR LYS ASP CYS LEU ALA LEU ASN SER ASN SEQRES 39 A 497 ILE THR ILE HET AMP A1000 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *131(H2 O) HELIX 1 AA1 ASN A 9 ARG A 14 1 6 HELIX 2 AA2 SER A 17 PHE A 24 1 8 HELIX 3 AA3 GLY A 25 GLU A 46 1 22 HELIX 4 AA4 THR A 52 GLN A 62 1 11 HELIX 5 AA5 ASP A 67 ARG A 79 1 13 HELIX 6 AA6 HIS A 80 CYS A 93 1 14 HELIX 7 AA7 ALA A 96 ILE A 100 5 5 HELIX 8 AA8 THR A 105 HIS A 143 1 39 HELIX 9 AA9 MET A 162 HIS A 186 1 25 HELIX 10 AB1 GLN A 200 PHE A 207 1 8 HELIX 11 AB2 ASP A 210 SER A 225 1 16 HELIX 12 AB3 ARG A 240 PHE A 270 1 31 HELIX 13 AB4 PRO A 293 ILE A 309 1 17 HELIX 14 AB5 SER A 310 VAL A 319 1 10 HELIX 15 AB6 ASP A 328 GLY A 356 1 29 HELIX 16 AB7 TYR A 360 VAL A 376 1 17 HELIX 17 AB8 VAL A 376 GLY A 388 1 13 HELIX 18 AB9 ASN A 391 LEU A 412 1 22 HELIX 19 AC1 SER A 418 ASN A 425 1 8 HELIX 20 AC2 ASP A 426 HIS A 433 5 8 HELIX 21 AC3 LEU A 435 VAL A 439 5 5 HELIX 22 AC4 ASP A 441 MET A 445 5 5 HELIX 23 AC5 ARG A 448 GLU A 460 1 13 HELIX 24 AC6 GLU A 460 ILE A 465 1 6 HELIX 25 AC7 HIS A 466 LYS A 469 5 4 SHEET 1 AA1 2 ILE A 147 THR A 152 0 SHEET 2 AA1 2 GLN A 155 THR A 161 -1 O ALA A 157 N ALA A 150 SHEET 1 AA2 2 VAL A 273 GLU A 274 0 SHEET 2 AA2 2 ILE A 358 VAL A 359 -1 O ILE A 358 N GLU A 274 SITE 1 AC1 16 ARG A 14 TYR A 15 ARG A 79 HIS A 80 SITE 2 AC1 16 ASP A 81 SER A 106 HIS A 153 GLN A 236 SITE 3 AC1 16 ARG A 298 LEU A 326 SER A 329 ALA A 330 SITE 4 AC1 16 ARG A 333 HOH A1122 HOH A1152 HOH A1170 CRYST1 70.466 73.114 180.280 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005547 0.00000