HEADER APOPTOSIS 26-NOV-15 5EZ0 TITLE CRYSTAL STRUCTURE OF THE PTPN4 PDZ DOMAIN COMPLEXED WITH THE PDZ TITLE 2 BINDING MOTIF OF THE MITOGEN ACTIVATED PROTEIN KINASE P38GAMMA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PDZ DOMAIN, RESIDUES 499-604; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE MEG1,PTPASE-MEG1; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 12; COMPND 10 CHAIN: E, F, G, H; COMPND 11 FRAGMENT: PDZ BINDING MOTIF, RESIDUES 269-277; COMPND 12 SYNONYM: MITOGEN-ACTIVATED PROTEIN KINASE 12,ISOFORM CRA_A; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST15; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, CELL DEATH, GLIOBLASTOMA, MULTIPROTEIN COMPLEXES, PDZ KEYWDS 2 DOMAINS, P38GAMMA, MITOGEN ACTIVATED PROTEIN KINASE, PROTEIN KEYWDS 3 BINDING, NON-RECEPTOR TYPE 4, PTPN4, RABIES VIRUS, PDZ BINDING MOTIF EXPDTA X-RAY DIFFRACTION AUTHOR P.MAISONNEUVE,M.C.VANEY,C.CAILLET-SAGUY,M.LAFON,M.DELEPIERRE, AUTHOR 2 F.CORDIER,N.WOLFF REVDAT 5 10-JAN-24 5EZ0 1 REMARK REVDAT 4 20-DEC-17 5EZ0 1 AUTHOR JRNL REVDAT 3 17-AUG-16 5EZ0 1 JRNL REVDAT 2 15-JUN-16 5EZ0 1 JRNL REVDAT 1 08-JUN-16 5EZ0 0 JRNL AUTH P.MAISONNEUVE,C.CAILLET-SAGUY,M.C.VANEY,E.BIBI-ZAINAB, JRNL AUTH 2 K.SAWYER,B.RAYNAL,A.HAOUZ,M.DELEPIERRE,M.LAFON,F.CORDIER, JRNL AUTH 3 N.WOLFF JRNL TITL MOLECULAR BASIS OF THE INTERACTION OF THE HUMAN PROTEIN JRNL TITL 2 TYROSINE PHOSPHATASE NON-RECEPTOR TYPE 4 (PTPN4) WITH THE JRNL TITL 3 MITOGEN-ACTIVATED PROTEIN KINASE P38 GAMMA. JRNL REF J.BIOL.CHEM. V. 291 16699 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27246854 JRNL DOI 10.1074/JBC.M115.707208 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.BABAULT,F.CORDIER,M.LAFAGE,J.COCKBURN,A.HAOUZ,C.PREHAUD, REMARK 1 AUTH 2 F.A.REY,M.DELEPIERRE,H.BUC,M.LAFON,N.WOLFF REMARK 1 TITL PEPTIDES TARGETING THE PDZ DOMAIN OF PTPN4 ARE EFFICIENT REMARK 1 TITL 2 INDUCERS OF GLIOBLASTOMA CELL DEATH. REMARK 1 REF STRUCTURE V. 19 1518 2011 REMARK 1 REFN ISSN 1878-4186 REMARK 1 PMID 22000519 REMARK 1 DOI 10.1016/J.STR.2011.07.007 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 21464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2680 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2584 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2550 REMARK 3 BIN R VALUE (WORKING SET) : 0.2564 REMARK 3 BIN FREE R VALUE : 0.2986 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.19960 REMARK 3 B22 (A**2) : 5.56000 REMARK 3 B33 (A**2) : -9.75960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.390 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.334 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.229 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.329 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.230 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3165 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4297 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1081 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 85 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 455 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3165 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 406 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3446 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 8.6474 -13.3381 29.6663 REMARK 3 T TENSOR REMARK 3 T11: -0.0457 T22: -0.0771 REMARK 3 T33: -0.0022 T12: 0.0497 REMARK 3 T13: 0.0074 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.3791 L22: 2.4537 REMARK 3 L33: 2.9372 L12: -1.0562 REMARK 3 L13: 1.3115 L23: 1.5557 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0556 S13: -0.0057 REMARK 3 S21: -0.1196 S22: 0.0014 S23: -0.2213 REMARK 3 S31: 0.0116 S32: 0.0326 S33: -0.0091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -24.6995 -9.1266 19.8044 REMARK 3 T TENSOR REMARK 3 T11: -0.0874 T22: -0.0709 REMARK 3 T33: 0.0009 T12: 0.0280 REMARK 3 T13: -0.0244 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.9641 L22: 3.9181 REMARK 3 L33: 4.3217 L12: -0.5478 REMARK 3 L13: 1.1871 L23: 1.2741 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.0664 S13: -0.1351 REMARK 3 S21: 0.0122 S22: -0.0150 S23: -0.0393 REMARK 3 S31: -0.0361 S32: -0.0253 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -8.9428 8.3448 33.0226 REMARK 3 T TENSOR REMARK 3 T11: -0.1413 T22: -0.0428 REMARK 3 T33: 0.0183 T12: 0.0336 REMARK 3 T13: -0.0587 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.9109 L22: 5.2222 REMARK 3 L33: 1.2012 L12: 0.4664 REMARK 3 L13: 1.0803 L23: -1.4171 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.1539 S13: 0.1326 REMARK 3 S21: 0.0320 S22: -0.0113 S23: -0.0272 REMARK 3 S31: -0.0073 S32: -0.0858 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -10.3753 -27.4016 16.4635 REMARK 3 T TENSOR REMARK 3 T11: -0.0060 T22: -0.0947 REMARK 3 T33: -0.0848 T12: 0.0760 REMARK 3 T13: -0.0487 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 5.4982 L22: 2.2024 REMARK 3 L33: 1.0104 L12: 0.0529 REMARK 3 L13: -0.8679 L23: 0.6651 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0464 S13: 0.0051 REMARK 3 S21: -0.1157 S22: 0.0110 S23: 0.1356 REMARK 3 S31: 0.0089 S32: 0.0382 S33: -0.0055 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 2.2771 -6.8418 23.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: -0.0111 REMARK 3 T33: 0.0110 T12: 0.0234 REMARK 3 T13: 0.0266 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.2572 L22: 0.1669 REMARK 3 L33: 0.1448 L12: -0.2398 REMARK 3 L13: 0.1057 L23: 0.1809 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.0016 S13: 0.0063 REMARK 3 S21: -0.0059 S22: 0.0002 S23: -0.0094 REMARK 3 S31: -0.0079 S32: 0.0007 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -30.6445 -1.8766 26.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0209 REMARK 3 T33: -0.0170 T12: 0.0101 REMARK 3 T13: 0.0206 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.1524 L22: 0.3600 REMARK 3 L33: 0.2983 L12: -0.2513 REMARK 3 L13: 0.2179 L23: 0.3416 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0040 S13: -0.0050 REMARK 3 S21: -0.0001 S22: -0.0002 S23: 0.0112 REMARK 3 S31: -0.0062 S32: -0.0002 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): -2.9887 -4.0650 44.0011 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0266 REMARK 3 T33: -0.0250 T12: 0.0427 REMARK 3 T13: -0.0504 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 0.3196 L22: 0.4544 REMARK 3 L33: 0.3750 L12: -0.4795 REMARK 3 L13: -0.0311 L23: 0.6088 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0023 S13: 0.0126 REMARK 3 S21: -0.0196 S22: 0.0028 S23: -0.0002 REMARK 3 S31: 0.0002 S32: 0.0077 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): 1.5919 -34.7407 5.6342 REMARK 3 T TENSOR REMARK 3 T11: 0.0224 T22: -0.0091 REMARK 3 T33: -0.0008 T12: 0.0852 REMARK 3 T13: 0.0057 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.7938 L22: 0.0068 REMARK 3 L33: 0.2515 L12: -0.4881 REMARK 3 L13: 0.4277 L23: -0.4197 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: -0.0147 S13: -0.0021 REMARK 3 S21: -0.0179 S22: 0.0076 S23: 0.0024 REMARK 3 S31: -0.0051 S32: -0.0059 S33: -0.0034 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 5EZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21504 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NFK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM DI-HYDROGEN PHOSPHATE 0.8 REMARK 280 M DI-POTASSIUM HYDROGEN PHOSPHATE 0.1M CAPS 0.2 M LITHIUM REMARK 280 SULFATE 0.67 M NON-DETERGENT SULFOBETAINE (NDSB) 201, PH 10.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.33800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 99.33800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.28200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.06050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.28200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.06050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.33800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.28200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.06050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.33800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.28200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.06050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 PRO A 501 REMARK 465 GLU A 502 REMARK 465 LYS A 503 REMARK 465 PRO A 504 REMARK 465 THR A 505 REMARK 465 PRO A 506 REMARK 465 ASN A 507 REMARK 465 GLY A 508 REMARK 465 GLY A 509 REMARK 465 ILE A 510 REMARK 465 GLU A 591 REMARK 465 ARG A 592 REMARK 465 HIS A 593 REMARK 465 SER A 594 REMARK 465 GLY B 498 REMARK 465 SER B 499 REMARK 465 SER B 500 REMARK 465 PRO B 501 REMARK 465 GLU B 502 REMARK 465 LYS B 503 REMARK 465 PRO B 504 REMARK 465 THR B 505 REMARK 465 PRO B 506 REMARK 465 ASN B 507 REMARK 465 GLY B 508 REMARK 465 GLY B 509 REMARK 465 GLU B 591 REMARK 465 ARG B 592 REMARK 465 HIS B 593 REMARK 465 GLY C 498 REMARK 465 SER C 499 REMARK 465 SER C 500 REMARK 465 PRO C 501 REMARK 465 GLU C 502 REMARK 465 LYS C 503 REMARK 465 PRO C 504 REMARK 465 THR C 505 REMARK 465 PRO C 506 REMARK 465 ASN C 507 REMARK 465 GLY C 508 REMARK 465 GLY C 509 REMARK 465 ILE C 510 REMARK 465 GLY D 498 REMARK 465 SER D 499 REMARK 465 SER D 500 REMARK 465 PRO D 501 REMARK 465 GLU D 502 REMARK 465 LYS D 503 REMARK 465 PRO D 504 REMARK 465 THR D 505 REMARK 465 PRO D 506 REMARK 465 ASN D 507 REMARK 465 GLY D 508 REMARK 465 GLY D 509 REMARK 465 SER E 3 REMARK 465 TRP E 4 REMARK 465 ALA E 5 REMARK 465 ARG E 6 REMARK 465 VAL E 7 REMARK 465 SER F 3 REMARK 465 TRP F 4 REMARK 465 ALA F 5 REMARK 465 ARG F 6 REMARK 465 VAL F 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 521 CG CD CE NZ REMARK 470 LYS A 533 CG CD CE NZ REMARK 470 LYS A 539 CG CD CE NZ REMARK 470 GLU A 576 CG CD OE1 OE2 REMARK 470 ASN A 604 CG OD1 ND2 REMARK 470 LYS B 539 CG CD CE NZ REMARK 470 GLU B 576 CG CD OE1 OE2 REMARK 470 SER B 594 OG REMARK 470 ASN B 604 CG OD1 ND2 REMARK 470 ASN C 514 CG OD1 ND2 REMARK 470 GLU C 524 CG CD OE1 OE2 REMARK 470 LYS C 539 CG CD CE NZ REMARK 470 ILE D 510 CG1 CG2 CD1 REMARK 470 GLU D 524 CG CD OE1 OE2 REMARK 470 LYS D 539 CG CD CE NZ REMARK 470 ASN D 604 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 206 O HOH G 208 3555 0.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 512 -9.07 -163.83 REMARK 500 ASP A 513 -61.10 -90.57 REMARK 500 LYS B 539 -9.03 68.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 G 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EYZ RELATED DB: PDB REMARK 900 5EYZ CONTAINS THE SAME PDZ DOMAIN OF THE PROTEIN TYROSINE REMARK 900 PHOSPHATASE NON RECEPTOR TYPE 4 (PTPN4) REMARK 900 RELATED ID: 3NFK RELATED DB: PDB REMARK 900 3NFK CONTAINS THE SAME PDZ DOMAIN OF THE PROTEIN TYROSINE REMARK 900 PHOSPHATASE NON RECEPTOR TYPE 4 (PTPN4) REMARK 900 RELATED ID: 3NFL RELATED DB: PDB REMARK 900 3NFL CONTAINS THE SAME PDZ DOMAIN OF THE PROTEIN TYROSINE REMARK 900 PHOSPHATASE NON RECEPTOR TYPE 4 (PTPN4) DBREF 5EZ0 A 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EZ0 B 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EZ0 C 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EZ0 D 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EZ0 E 5 13 UNP B5MDL5 B5MDL5_HUMAN 269 277 DBREF 5EZ0 F 5 13 UNP B5MDL5 B5MDL5_HUMAN 269 277 DBREF 5EZ0 G 5 13 UNP B5MDL5 B5MDL5_HUMAN 269 277 DBREF 5EZ0 H 5 13 UNP B5MDL5 B5MDL5_HUMAN 269 277 SEQADV 5EZ0 GLY A 498 UNP P29074 EXPRESSION TAG SEQADV 5EZ0 GLY B 498 UNP P29074 EXPRESSION TAG SEQADV 5EZ0 GLY C 498 UNP P29074 EXPRESSION TAG SEQADV 5EZ0 GLY D 498 UNP P29074 EXPRESSION TAG SEQADV 5EZ0 SER E 3 UNP B5MDL5 EXPRESSION TAG SEQADV 5EZ0 TRP E 4 UNP B5MDL5 EXPRESSION TAG SEQADV 5EZ0 SER F 3 UNP B5MDL5 EXPRESSION TAG SEQADV 5EZ0 TRP F 4 UNP B5MDL5 EXPRESSION TAG SEQADV 5EZ0 SER G 3 UNP B5MDL5 EXPRESSION TAG SEQADV 5EZ0 TRP G 4 UNP B5MDL5 EXPRESSION TAG SEQADV 5EZ0 SER H 3 UNP B5MDL5 EXPRESSION TAG SEQADV 5EZ0 TRP H 4 UNP B5MDL5 EXPRESSION TAG SEQRES 1 A 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 A 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 A 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 A 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 A 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 A 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 A 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 A 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 A 107 ARG PRO ASN SEQRES 1 B 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 B 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 B 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 B 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 B 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 B 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 B 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 B 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 B 107 ARG PRO ASN SEQRES 1 C 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 C 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 C 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 C 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 C 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 C 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 C 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 C 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 C 107 ARG PRO ASN SEQRES 1 D 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 D 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 D 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 D 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 D 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 D 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 D 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 D 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 D 107 ARG PRO ASN SEQRES 1 E 11 SER TRP ALA ARG VAL SER LYS GLU THR PRO LEU SEQRES 1 F 11 SER TRP ALA ARG VAL SER LYS GLU THR PRO LEU SEQRES 1 G 11 SER TRP ALA ARG VAL SER LYS GLU THR PRO LEU SEQRES 1 H 11 SER TRP ALA ARG VAL SER LYS GLU THR PRO LEU HET SO4 D 701 5 HET SO4 G 101 5 HETNAM SO4 SULFATE ION FORMUL 9 SO4 2(O4 S 2-) FORMUL 11 HOH *95(H2 O) HELIX 1 AA1 THR A 551 CYS A 556 1 6 HELIX 2 AA2 THR A 578 LYS A 587 1 10 HELIX 3 AA3 THR B 551 CYS B 556 1 6 HELIX 4 AA4 THR B 578 LYS B 587 1 10 HELIX 5 AA5 THR C 551 CYS C 556 1 6 HELIX 6 AA6 THR C 578 ALA C 588 1 11 HELIX 7 AA7 SER C 589 GLU C 596 5 8 HELIX 8 AA8 THR D 551 CYS D 556 1 6 HELIX 9 AA9 THR D 578 ALA D 588 1 11 HELIX 10 AB1 SER D 589 GLU D 596 5 8 SHEET 1 AA1 4 VAL A 516 MET A 520 0 SHEET 2 AA1 4 LEU A 597 ARG A 602 -1 O LEU A 599 N ILE A 518 SHEET 3 AA1 4 GLN A 565 ILE A 569 -1 N VAL A 567 O LEU A 600 SHEET 4 AA1 4 ARG A 572 ASP A 573 -1 O ARG A 572 N ILE A 569 SHEET 1 AA2 3 MET A 540 VAL A 547 0 SHEET 2 AA2 3 PHE A 530 GLY A 535 -1 N GLY A 535 O MET A 540 SHEET 3 AA2 3 GLU E 10 LEU E 13 -1 O LEU E 13 N PHE A 530 SHEET 1 AA3 4 VAL B 516 MET B 520 0 SHEET 2 AA3 4 LEU B 597 ARG B 602 -1 O LEU B 597 N MET B 520 SHEET 3 AA3 4 GLN B 565 ILE B 569 -1 N VAL B 567 O LEU B 600 SHEET 4 AA3 4 ARG B 572 ASP B 573 -1 O ARG B 572 N ILE B 569 SHEET 1 AA4 3 ILE B 543 VAL B 547 0 SHEET 2 AA4 3 PHE B 530 LYS B 533 -1 N LYS B 533 O ILE B 543 SHEET 3 AA4 3 GLU F 10 PRO F 12 -1 O THR F 11 N VAL B 532 SHEET 1 AA5 4 VAL C 516 MET C 520 0 SHEET 2 AA5 4 LEU C 597 ARG C 602 -1 O LEU C 599 N ILE C 518 SHEET 3 AA5 4 GLN C 565 ILE C 569 -1 N VAL C 567 O LEU C 600 SHEET 4 AA5 4 ARG C 572 ASP C 573 -1 O ARG C 572 N ILE C 569 SHEET 1 AA6 3 ILE C 543 VAL C 547 0 SHEET 2 AA6 3 PHE C 530 LYS C 533 -1 N LYS C 533 O ILE C 543 SHEET 3 AA6 3 GLU G 10 PRO G 12 -1 O THR G 11 N VAL C 532 SHEET 1 AA7 4 VAL D 516 MET D 520 0 SHEET 2 AA7 4 LEU D 597 ARG D 602 -1 O LEU D 597 N MET D 520 SHEET 3 AA7 4 GLN D 565 ILE D 569 -1 N VAL D 567 O LEU D 600 SHEET 4 AA7 4 ARG D 572 ASP D 573 -1 O ARG D 572 N ILE D 569 SHEET 1 AA8 3 ILE D 543 VAL D 547 0 SHEET 2 AA8 3 PHE D 530 LYS D 533 -1 N LYS D 533 O ILE D 543 SHEET 3 AA8 3 GLU H 10 PRO H 12 -1 O THR H 11 N VAL D 532 SSBOND 1 CYS A 590 CYS D 590 1555 1555 2.02 SSBOND 2 CYS B 590 CYS C 590 1555 1555 2.03 CISPEP 1 VAL A 557 PRO A 558 0 0.27 CISPEP 2 VAL B 557 PRO B 558 0 1.09 CISPEP 3 VAL C 557 PRO C 558 0 1.30 CISPEP 4 VAL D 557 PRO D 558 0 1.39 SITE 1 AC1 4 LYS D 533 MET D 540 VAL H 7 SER H 8 SITE 1 AC2 5 LYS C 533 LYS C 539 MET C 540 VAL G 7 SITE 2 AC2 5 SER G 8 CRYST1 68.564 76.121 198.676 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005033 0.00000 MTRIX1 1 -0.104600 -0.994500 0.002796 -3.04500 1 MTRIX2 1 -0.994500 0.104600 -0.002913 -36.97000 1 MTRIX3 1 0.002604 -0.003086 -1.000000 49.50000 1 MTRIX1 2 -0.380200 0.750200 0.541000 -19.02000 1 MTRIX2 2 0.759100 -0.081060 0.645900 -27.90000 1 MTRIX3 2 0.528400 0.656200 -0.538700 46.72000 1 MTRIX1 3 -0.713100 0.447800 -0.539500 22.42000 1 MTRIX2 3 0.001061 -0.768800 -0.639500 -24.58000 1 MTRIX3 3 -0.701100 -0.456600 0.547700 0.86640 1