HEADER DE NOVO PROTEIN 26-NOV-15 5EZE TITLE A DE NOVO DESIGNED HEPTAMERIC COILED COIL CC-HEPT-I18BETAMECYS-L22H- TITLE 2 I25E COMPND MOL_ID: 1; COMPND 2 MOLECULE: CC-HEPT-BMECYS-HIS-GLU; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS COILED COIL, HEPTAMER, DE NOVO STRUCTURE, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BURTON,R.L.BRADY,D.N.WOOLFSON REVDAT 3 10-JAN-24 5EZE 1 LINK REVDAT 2 07-SEP-16 5EZE 1 JRNL REVDAT 1 06-JUL-16 5EZE 0 JRNL AUTH A.J.BURTON,A.R.THOMSON,W.M.DAWSON,R.L.BRADY,D.N.WOOLFSON JRNL TITL INSTALLING HYDROLYTIC ACTIVITY INTO A COMPLETELY DE NOVO JRNL TITL 2 PROTEIN FRAMEWORK. JRNL REF NAT.CHEM. V. 8 837 2016 JRNL REFN ESSN 1755-4349 JRNL PMID 27554410 JRNL DOI 10.1038/NCHEM.2555 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8300 - 3.5996 0.99 2631 160 0.2029 0.2537 REMARK 3 2 3.5996 - 2.8573 0.99 2617 131 0.2036 0.2260 REMARK 3 3 2.8573 - 2.4961 1.00 2580 144 0.2013 0.2164 REMARK 3 4 2.4961 - 2.2679 0.99 2613 135 0.1882 0.2136 REMARK 3 5 2.2679 - 2.1054 0.99 2596 140 0.1886 0.2473 REMARK 3 6 2.1054 - 1.9812 0.99 2562 141 0.2327 0.2738 REMARK 3 7 1.9812 - 1.8820 0.99 2601 113 0.2452 0.2609 REMARK 3 8 1.8820 - 1.8001 0.99 2585 147 0.2646 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1466 REMARK 3 ANGLE : 0.861 1917 REMARK 3 CHIRALITY : 0.040 214 REMARK 3 PLANARITY : 0.003 229 REMARK 3 DIHEDRAL : 13.480 528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4244 0.1803 -43.0381 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.3070 REMARK 3 T33: 0.3179 T12: -0.0040 REMARK 3 T13: 0.0012 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 4.8151 L22: 3.6621 REMARK 3 L33: 3.8906 L12: 1.4109 REMARK 3 L13: -5.4382 L23: -1.6175 REMARK 3 S TENSOR REMARK 3 S11: 0.2476 S12: -0.0233 S13: 0.7118 REMARK 3 S21: -0.3832 S22: -0.0182 S23: -0.4642 REMARK 3 S31: -0.1239 S32: 0.2786 S33: -0.2542 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4144 -19.3964 -35.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.2584 REMARK 3 T33: 0.3078 T12: 0.0400 REMARK 3 T13: -0.0224 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 5.3565 L22: 2.7259 REMARK 3 L33: 4.1786 L12: 1.3830 REMARK 3 L13: -5.5314 L23: -0.9904 REMARK 3 S TENSOR REMARK 3 S11: -0.5844 S12: -0.1754 S13: -1.5320 REMARK 3 S21: -0.0116 S22: 0.0715 S23: -0.2817 REMARK 3 S31: 0.6427 S32: 0.3824 S33: 0.4954 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1408 -17.3922 -41.3501 REMARK 3 T TENSOR REMARK 3 T11: 0.5865 T22: 1.1224 REMARK 3 T33: 1.0045 T12: -0.2798 REMARK 3 T13: -0.0840 T23: 0.1401 REMARK 3 L TENSOR REMARK 3 L11: 2.9276 L22: 3.9116 REMARK 3 L33: 4.5035 L12: 3.3745 REMARK 3 L13: 3.4546 L23: 3.8799 REMARK 3 S TENSOR REMARK 3 S11: -2.0439 S12: 2.0287 S13: 1.5714 REMARK 3 S21: 0.1553 S22: 0.0192 S23: -3.3047 REMARK 3 S31: -1.3966 S32: 4.0422 S33: 1.8395 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2227 -4.1287 -49.0583 REMARK 3 T TENSOR REMARK 3 T11: 0.3163 T22: 0.4730 REMARK 3 T33: 0.2231 T12: -0.0080 REMARK 3 T13: 0.0134 T23: 0.0724 REMARK 3 L TENSOR REMARK 3 L11: 7.0959 L22: 5.0998 REMARK 3 L33: 4.2513 L12: -1.9915 REMARK 3 L13: -5.5858 L23: 2.1586 REMARK 3 S TENSOR REMARK 3 S11: 0.4072 S12: 1.0804 S13: 0.6828 REMARK 3 S21: -0.7193 S22: 0.0865 S23: -0.4807 REMARK 3 S31: -0.4681 S32: -0.1421 S33: -0.5104 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.7631 -12.2970 -48.7283 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.4105 REMARK 3 T33: 0.1111 T12: -0.0123 REMARK 3 T13: -0.0251 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 6.2595 L22: 6.3656 REMARK 3 L33: 8.0970 L12: -0.9627 REMARK 3 L13: -2.9036 L23: 1.9444 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: 1.4268 S13: -0.1107 REMARK 3 S21: -0.5234 S22: -0.0337 S23: -0.2742 REMARK 3 S31: 0.0821 S32: -0.5451 S33: -0.0561 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6744 -19.3396 -45.5092 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.2329 REMARK 3 T33: 0.2458 T12: -0.0195 REMARK 3 T13: 0.0002 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 9.1334 L22: 4.1894 REMARK 3 L33: 8.0935 L12: -3.2615 REMARK 3 L13: -6.8314 L23: 2.0698 REMARK 3 S TENSOR REMARK 3 S11: -0.1604 S12: 0.5343 S13: -0.5003 REMARK 3 S21: -0.1577 S22: 0.0166 S23: -0.4218 REMARK 3 S31: 0.1264 S32: 0.1097 S33: 0.1854 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1628 -2.9423 -35.1715 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.3141 REMARK 3 T33: 0.3061 T12: -0.0465 REMARK 3 T13: -0.0496 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 8.4574 L22: 4.8202 REMARK 3 L33: 8.2505 L12: 1.1727 REMARK 3 L13: -5.9353 L23: -0.8433 REMARK 3 S TENSOR REMARK 3 S11: 0.2589 S12: -0.6512 S13: 0.5691 REMARK 3 S21: -0.2290 S22: -0.1171 S23: -0.6668 REMARK 3 S31: -0.4536 S32: 0.9254 S33: -0.0961 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7403 -11.7128 -33.6953 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.2967 REMARK 3 T33: 0.1931 T12: 0.0085 REMARK 3 T13: -0.0801 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 7.7304 L22: 2.6123 REMARK 3 L33: 8.1330 L12: 2.0380 REMARK 3 L13: -5.7554 L23: -1.8466 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -0.3854 S13: -0.3642 REMARK 3 S21: -0.0772 S22: -0.0881 S23: -0.2717 REMARK 3 S31: -0.0399 S32: 0.7370 S33: 0.1388 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.833 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.07100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE WITH 20% W/V PEG REMARK 280 3350., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 18.09724 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.80306 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 18.09724 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 31.80306 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 GLU B 25 REMARK 465 ALA B 26 REMARK 465 LYS B 27 REMARK 465 ALA B 28 REMARK 465 LEU B 29 REMARK 465 ARG B 30 REMARK 465 GLY B 31 REMARK 465 LEU C 29 REMARK 465 ARG C 30 REMARK 465 GLY C 31 REMARK 465 GLU D 24 REMARK 465 GLU D 25 REMARK 465 ALA D 26 REMARK 465 LYS D 27 REMARK 465 ALA D 28 REMARK 465 LEU D 29 REMARK 465 ARG D 30 REMARK 465 GLY D 31 REMARK 465 LEU E 29 REMARK 465 ARG E 30 REMARK 465 GLY E 31 REMARK 465 ARG F 30 REMARK 465 GLY F 31 REMARK 465 GLY G 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 LYS C 6 CE NZ REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 GLU C 25 CG CD OE1 OE2 REMARK 470 LYS C 27 CG CD CE NZ REMARK 470 HIS D 22 CG ND1 CD2 CE1 NE2 REMARK 470 GLU E 25 CG CD OE1 OE2 REMARK 470 LYS F 27 CG CD CE NZ REMARK 470 LEU F 29 CG CD1 CD2 REMARK 470 LEU G 29 CG CD1 CD2 REMARK 470 ARG G 30 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 25 CD REMARK 480 GLU E 25 CB REMARK 480 GLU F 25 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 111 O HOH D 113 1.91 REMARK 500 O HOH D 109 O HOH D 113 1.92 REMARK 500 OE1 GLU G 10 O HOH G 101 2.10 REMARK 500 OE1 GLU A 10 O HOH A 201 2.15 REMARK 500 OE2 GLU B 17 O HOH B 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 211 O HOH F 105 2354 1.99 REMARK 500 O HOH D 113 O HOH F 114 2354 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CG6 B 18 -14.28 REMARK 500 GLU C 17 10.51 REMARK 500 CG6 D 18 -15.68 REMARK 500 GLU E 17 17.14 REMARK 500 CG6 E 18 -10.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 116 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH E 120 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH G 119 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH G 120 DISTANCE = 7.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE B 1 and GLY B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU B 17 and CG6 B REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CG6 B 18 and ALA B REMARK 800 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 1 and GLY C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU C 17 and CG6 C REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CG6 C 18 and ALA C REMARK 800 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 1 and GLY D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU D 17 and CG6 D REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CG6 D 18 and ALA D REMARK 800 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE E 1 and GLY E 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU E 17 and CG6 E REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CG6 E 18 and ALA E REMARK 800 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE F 1 and GLY F 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU F 17 and CG6 F REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CG6 F 18 and ALA F REMARK 800 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE G 1 and GLY G 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU G 17 and CG6 G REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CG6 G 18 and ALA G REMARK 800 19 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PNA RELATED DB: PDB REMARK 900 PARENT HEPTAMERIC COILED COIL STRUCTURE DBREF 5EZE A 1 31 PDB 5EZE 5EZE 1 31 DBREF 5EZE B 1 31 PDB 5EZE 5EZE 1 31 DBREF 5EZE C 1 31 PDB 5EZE 5EZE 1 31 DBREF 5EZE D 1 31 PDB 5EZE 5EZE 1 31 DBREF 5EZE E 1 31 PDB 5EZE 5EZE 1 31 DBREF 5EZE F 1 31 PDB 5EZE 5EZE 1 31 DBREF 5EZE G 1 31 PDB 5EZE 5EZE 1 31 SEQRES 1 A 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 A 31 ALA LEU ARG GLU CG6 ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 A 31 LYS ALA LEU ARG GLY SEQRES 1 B 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 B 31 ALA LEU ARG GLU CG6 ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 B 31 LYS ALA LEU ARG GLY SEQRES 1 C 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 C 31 ALA LEU ARG GLU CG6 ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 C 31 LYS ALA LEU ARG GLY SEQRES 1 D 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 D 31 ALA LEU ARG GLU CG6 ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 D 31 LYS ALA LEU ARG GLY SEQRES 1 E 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 E 31 ALA LEU ARG GLU CG6 ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 E 31 LYS ALA LEU ARG GLY SEQRES 1 F 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 F 31 ALA LEU ARG GLU CG6 ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 F 31 LYS ALA LEU ARG GLY SEQRES 1 G 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 G 31 ALA LEU ARG GLU CG6 ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 G 31 LYS ALA LEU ARG GLY HET ACE A 1 3 HET CG6 A 18 7 HET ACE B 1 3 HET CG6 B 18 7 HET ACE C 1 3 HET CG6 C 18 7 HET ACE D 1 3 HET CG6 D 18 7 HET ACE E 1 3 HET CG6 E 18 7 HET ACE F 1 3 HET CG6 F 18 7 HET ACE G 1 3 HET CG6 G 18 7 HET GOL A 101 6 HET GOL C 101 6 HETNAM ACE ACETYL GROUP HETNAM CG6 BETA-METHYL-CYSTEINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ACE 7(C2 H4 O) FORMUL 1 CG6 7(C4 H9 N O2 S) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *117(H2 O) HELIX 1 AA1 GLY A 2 LEU A 29 1 28 HELIX 2 AA2 GLY B 2 GLU B 24 1 23 HELIX 3 AA3 GLY C 2 ALA C 28 1 27 HELIX 4 AA4 GLY D 2 HIS D 22 1 21 HELIX 5 AA5 GLY E 2 ALA E 28 1 27 HELIX 6 AA6 GLY F 2 LEU F 29 1 28 HELIX 7 AA7 GLY G 2 LEU G 29 1 28 LINK C ACE A 1 N GLY A 2 1555 1555 1.33 LINK C GLU A 17 N CG6 A 18 1555 1555 1.45 LINK C CG6 A 18 N ALA A 19 1555 1555 1.44 LINK C ACE B 1 N GLY B 2 1555 1555 1.33 LINK C GLU B 17 N CG6 B 18 1555 1555 1.45 LINK C CG6 B 18 N ALA B 19 1555 1555 1.45 LINK C ACE C 1 N GLY C 2 1555 1555 1.32 LINK C GLU C 17 N CG6 C 18 1555 1555 1.45 LINK C CG6 C 18 N ALA C 19 1555 1555 1.45 LINK C ACE D 1 N GLY D 2 1555 1555 1.33 LINK C GLU D 17 N CG6 D 18 1555 1555 1.45 LINK C CG6 D 18 N ALA D 19 1555 1555 1.45 LINK C ACE E 1 N GLY E 2 1555 1555 1.33 LINK C GLU E 17 N CG6 E 18 1555 1555 1.44 LINK C CG6 E 18 N ALA E 19 1555 1555 1.46 LINK C ACE F 1 N GLY F 2 1555 1555 1.33 LINK C GLU F 17 N CG6 F 18 1555 1555 1.44 LINK C CG6 F 18 N ALA F 19 1555 1555 1.44 LINK C ACE G 1 N GLY G 2 1555 1555 1.33 LINK C GLU G 17 N CG6 G 18 1555 1555 1.44 LINK C CG6 G 18 N ALA G 19 1555 1555 1.45 SITE 1 AC1 7 GLY A 2 GLU A 3 ILE A 4 ALA A 5 SITE 2 AC1 7 GLU C 3 ILE C 4 GOL C 101 SITE 1 AC2 10 GLU A 3 ILE A 4 GOL A 101 HOH A 205 SITE 2 AC2 10 GLY C 2 GLU C 3 ILE C 4 ALA C 5 SITE 3 AC2 10 HOH C 209 HOH C 211 SITE 1 AC3 8 GLU B 3 ILE B 4 ALA B 5 LYS B 6 SITE 2 AC3 8 ACE E 1 GLY E 2 GLU G 3 HOH G 102 SITE 1 AC4 13 LYS B 13 ALA B 14 LEU B 15 ARG B 16 SITE 2 AC4 13 ALA B 19 TRP B 20 ALA B 21 HIS B 22 SITE 3 AC4 13 HOH B 101 HOH B 102 HOH B 106 LEU E 15 SITE 4 AC4 13 ALA E 19 SITE 1 AC5 12 ALA B 14 LEU B 15 ARG B 16 GLU B 17 SITE 2 AC5 12 TRP B 20 ALA B 21 HIS B 22 ARG B 23 SITE 3 AC5 12 LEU E 15 ALA E 19 GLU G 17 ALA G 21 SITE 1 AC6 8 GLU C 3 ILE C 4 ALA C 5 LYS C 6 SITE 2 AC6 8 GOL C 101 GLU D 3 ACE F 1 GLY F 2 SITE 1 AC7 16 LEU A 15 ARG A 16 ALA A 19 ARG A 23 SITE 2 AC7 16 HOH A 207 LYS C 13 ALA C 14 LEU C 15 SITE 3 AC7 16 ARG C 16 ALA C 19 TRP C 20 ALA C 21 SITE 4 AC7 16 HIS C 22 HOH C 203 HOH C 208 ARG E 23 SITE 1 AC8 10 LEU A 15 ALA C 14 LEU C 15 ARG C 16 SITE 2 AC8 10 GLU C 17 TRP C 20 ALA C 21 HIS C 22 SITE 3 AC8 10 ARG C 23 ALA D 21 SITE 1 AC9 8 GLU D 3 ILE D 4 ALA D 5 LYS D 6 SITE 2 AC9 8 GLU E 3 GLU F 3 ACE G 1 GLY G 2 SITE 1 AD1 10 LEU C 15 LYS D 13 ALA D 14 LEU D 15 SITE 2 AD1 10 ARG D 16 ALA D 19 TRP D 20 ALA D 21 SITE 3 AD1 10 HIS D 22 HOH D 101 SITE 1 AD2 11 LEU C 15 ALA D 14 LEU D 15 ARG D 16 SITE 2 AD2 11 GLU D 17 TRP D 20 ALA D 21 HIS D 22 SITE 3 AD2 11 GLU E 17 CG6 E 18 ALA E 21 SITE 1 AD3 8 ACE B 1 GLY B 2 GLU B 3 GLU E 3 SITE 2 AD3 8 ILE E 4 ALA E 5 LYS E 6 HOH E 105 SITE 1 AD4 15 TRP A 20 LEU D 15 ARG D 16 ALA D 19 SITE 2 AD4 15 TRP D 20 LYS E 13 ALA E 14 LEU E 15 SITE 3 AD4 15 ARG E 16 ALA E 19 TRP E 20 ALA E 21 SITE 4 AD4 15 HIS E 22 HOH E 103 HOH E 112 SITE 1 AD5 13 GLU B 17 CG6 B 18 ALA B 21 LEU D 15 SITE 2 AD5 13 ALA D 19 ALA E 14 LEU E 15 ARG E 16 SITE 3 AD5 13 GLU E 17 TRP E 20 ALA E 21 HIS E 22 SITE 4 AD5 13 ARG E 23 SITE 1 AD6 10 GLU A 3 HOH A 202 ACE C 1 GLY C 2 SITE 2 AD6 10 GLU D 3 GLU F 3 ILE F 4 ALA F 5 SITE 3 AD6 10 LYS F 6 HOH F 105 SITE 1 AD7 14 LYS F 13 ALA F 14 LEU F 15 ARG F 16 SITE 2 AD7 14 ALA F 19 TRP F 20 ALA F 21 HIS F 22 SITE 3 AD7 14 HOH F 106 HOH F 108 HOH F 109 LEU G 15 SITE 4 AD7 14 ARG G 16 ALA G 19 SITE 1 AD8 12 GLU A 17 ALA A 21 ALA F 14 LEU F 15 SITE 2 AD8 12 ARG F 16 GLU F 17 TRP F 20 ALA F 21 SITE 3 AD8 12 HIS F 22 ARG F 23 LEU G 15 ALA G 19 SITE 1 AD9 8 ACE D 1 GLY D 2 GLU F 3 HOH F 102 SITE 2 AD9 8 GLU G 3 ILE G 4 ALA G 5 LYS G 6 SITE 1 AE1 13 LEU B 15 ALA B 19 ARG B 23 HOH B 103 SITE 2 AE1 13 LYS G 13 ALA G 14 LEU G 15 ARG G 16 SITE 3 AE1 13 ALA G 19 TRP G 20 ALA G 21 HIS G 22 SITE 4 AE1 13 HOH G 110 SITE 1 AE2 12 LEU B 15 GLU F 17 CG6 F 18 ALA F 21 SITE 2 AE2 12 ALA G 14 LEU G 15 ARG G 16 GLU G 17 SITE 3 AE2 12 TRP G 20 ALA G 21 HIS G 22 ARG G 23 CRYST1 62.450 60.490 68.812 90.00 112.43 90.00 I 1 2 1 28 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016013 0.000000 0.006611 0.00000 SCALE2 0.000000 0.016532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015722 0.00000 HETATM 1 C ACE A 1 -47.881 4.637 -32.589 1.00 33.61 C HETATM 2 O ACE A 1 -48.121 5.460 -33.474 1.00 49.48 O HETATM 3 CH3 ACE A 1 -47.485 5.048 -31.200 1.00 32.73 C