HEADER VIRAL PROTEIN 26-NOV-15 5EZU TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF VACCINIA VIRUS TITLE 2 IMMUNOMODULATOR A46 IN COMPLEX WITH MYRISTIC ACID. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN A46; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN WESTERN RESERVE); SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 GENE: VACWR172, A46R; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-TRX KEYWDS IMMUNOMODULATOR, BETA SHEET, AB INITIO PHASING, VACCINIA VIRUS, A46, KEYWDS 2 VIRAL PROTEIN, FATTY ACIDS, MYRISTIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR S.FEDOSYUK,G.A.BEZERRA,M.SAMMITO,I.USON,T.SKERN REVDAT 3 06-SEP-17 5EZU 1 REMARK REVDAT 2 28-DEC-16 5EZU 1 JRNL REVDAT 1 30-NOV-16 5EZU 0 JRNL AUTH S.FEDOSYUK,G.A.BEZERRA,K.RADAKOVICS,T.K.SMITH,M.SAMMITO, JRNL AUTH 2 N.BOBIK,A.ROUND,L.F.TEN EYCK,K.DJINOVIC-CARUGO,I.USON, JRNL AUTH 3 T.SKERN JRNL TITL VACCINIA VIRUS IMMUNOMODULATOR A46: A LIPID AND JRNL TITL 2 PROTEIN-BINDING SCAFFOLD FOR SEQUESTERING HOST TIR-DOMAIN JRNL TITL 3 PROTEINS. JRNL REF PLOS PATHOG. V. 12 06079 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27973613 JRNL DOI 10.1371/JOURNAL.PPAT.1006079 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1938 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8570 - 3.0996 1.00 2877 118 0.1656 0.2070 REMARK 3 2 3.0996 - 2.4604 1.00 2797 151 0.2162 0.2525 REMARK 3 3 2.4604 - 2.1494 1.00 2765 166 0.1925 0.2409 REMARK 3 4 2.1494 - 1.9528 1.00 2797 132 0.2003 0.2436 REMARK 3 5 1.9528 - 1.8129 0.99 2759 143 0.2276 0.2828 REMARK 3 6 1.8129 - 1.7060 0.99 2749 141 0.2849 0.3053 REMARK 3 7 1.7060 - 1.6205 0.99 2768 149 0.3247 0.3491 REMARK 3 8 1.6205 - 1.5500 0.98 2776 101 0.3555 0.3937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1247 REMARK 3 ANGLE : 1.025 1703 REMARK 3 CHIRALITY : 0.056 199 REMARK 3 PLANARITY : 0.004 222 REMARK 3 DIHEDRAL : 13.585 468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7194 -10.8464 42.4799 REMARK 3 T TENSOR REMARK 3 T11: 0.3336 T22: 0.3653 REMARK 3 T33: 0.2301 T12: 0.0729 REMARK 3 T13: -0.0407 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.0770 L22: 4.7131 REMARK 3 L33: 5.0087 L12: -0.3659 REMARK 3 L13: -3.0251 L23: 1.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.2726 S12: 0.7413 S13: 0.1057 REMARK 3 S21: -0.7259 S22: -0.0861 S23: 0.2089 REMARK 3 S31: -0.0799 S32: -0.4466 S33: -0.2266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9865 4.2686 50.2152 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.2586 REMARK 3 T33: 0.3606 T12: 0.1307 REMARK 3 T13: -0.1011 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 7.3811 L22: 5.1176 REMARK 3 L33: 6.1498 L12: -2.2457 REMARK 3 L13: -3.0046 L23: 1.2246 REMARK 3 S TENSOR REMARK 3 S11: -0.4063 S12: -0.2031 S13: 1.2151 REMARK 3 S21: 0.1751 S22: 0.3714 S23: -0.1433 REMARK 3 S31: -0.3505 S32: -0.3019 S33: 0.0448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8255 -0.8500 48.3491 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.3389 REMARK 3 T33: 0.2850 T12: 0.0718 REMARK 3 T13: -0.0358 T23: -0.0508 REMARK 3 L TENSOR REMARK 3 L11: 4.7775 L22: 4.6346 REMARK 3 L33: 9.4883 L12: 0.0540 REMARK 3 L13: -0.8895 L23: -1.7073 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.2890 S13: 0.2715 REMARK 3 S21: 0.0514 S22: 0.0226 S23: 0.1413 REMARK 3 S31: -0.3237 S32: -0.8270 S33: 0.2459 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7634 -12.0438 45.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.3628 REMARK 3 T33: 0.2150 T12: 0.0053 REMARK 3 T13: 0.0228 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 2.9773 L22: 4.7886 REMARK 3 L33: 1.3758 L12: -2.6660 REMARK 3 L13: 0.0803 L23: 0.9291 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.0268 S13: -0.1618 REMARK 3 S21: -0.0182 S22: -0.0494 S23: 0.3430 REMARK 3 S31: 0.1281 S32: -0.4850 S33: 0.1367 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3567 -7.3108 57.1114 REMARK 3 T TENSOR REMARK 3 T11: 0.4077 T22: 0.2335 REMARK 3 T33: 0.2508 T12: 0.0214 REMARK 3 T13: -0.0966 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 6.2172 L22: 4.3505 REMARK 3 L33: 8.0003 L12: -0.7739 REMARK 3 L13: 0.3831 L23: 5.7373 REMARK 3 S TENSOR REMARK 3 S11: -0.1685 S12: 0.0464 S13: 0.4482 REMARK 3 S21: 0.2540 S22: -0.4111 S23: -0.1129 REMARK 3 S31: -0.6931 S32: 0.1888 S33: 0.1883 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9229 -6.6017 60.1362 REMARK 3 T TENSOR REMARK 3 T11: 0.3150 T22: 0.5057 REMARK 3 T33: 0.2382 T12: 0.1711 REMARK 3 T13: 0.0417 T23: -0.1494 REMARK 3 L TENSOR REMARK 3 L11: 3.3675 L22: 7.0259 REMARK 3 L33: 2.6286 L12: -2.3906 REMARK 3 L13: -0.9348 L23: 2.3581 REMARK 3 S TENSOR REMARK 3 S11: -0.4437 S12: -1.0044 S13: 0.0644 REMARK 3 S21: 0.7520 S22: 0.3446 S23: 0.4553 REMARK 3 S31: 0.0312 S32: -0.4464 S33: 0.1927 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6073 -6.0256 61.4989 REMARK 3 T TENSOR REMARK 3 T11: 0.3372 T22: 0.2954 REMARK 3 T33: 0.1836 T12: 0.0627 REMARK 3 T13: -0.0716 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 8.0924 L22: 4.8479 REMARK 3 L33: 3.6460 L12: -6.4572 REMARK 3 L13: -3.4683 L23: 3.5789 REMARK 3 S TENSOR REMARK 3 S11: -0.1758 S12: -0.1882 S13: 0.3124 REMARK 3 S21: 1.0687 S22: -0.1754 S23: -0.1965 REMARK 3 S31: -0.1833 S32: -0.7357 S33: 0.2122 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8199 -7.1797 63.6723 REMARK 3 T TENSOR REMARK 3 T11: 0.3503 T22: 0.2273 REMARK 3 T33: 0.2342 T12: -0.0006 REMARK 3 T13: -0.0768 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 6.7487 L22: 2.3489 REMARK 3 L33: 5.9534 L12: -3.7107 REMARK 3 L13: 1.0513 L23: -1.3558 REMARK 3 S TENSOR REMARK 3 S11: 0.2152 S12: -0.0998 S13: -0.1150 REMARK 3 S21: -0.1597 S22: -0.4102 S23: 0.4087 REMARK 3 S31: 0.0728 S32: -0.1024 S33: 0.2508 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6727 8.1039 57.7078 REMARK 3 T TENSOR REMARK 3 T11: 0.7441 T22: 0.3101 REMARK 3 T33: 0.8224 T12: 0.1313 REMARK 3 T13: -0.1389 T23: -0.1143 REMARK 3 L TENSOR REMARK 3 L11: 3.4644 L22: 4.7039 REMARK 3 L33: 4.4345 L12: -2.6158 REMARK 3 L13: -0.3396 L23: 3.1545 REMARK 3 S TENSOR REMARK 3 S11: -0.3753 S12: -0.2069 S13: 1.6288 REMARK 3 S21: 1.2486 S22: 0.3905 S23: 0.6200 REMARK 3 S31: -0.9291 S32: -0.2376 S33: -0.1779 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0413 -11.6810 47.8113 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.2741 REMARK 3 T33: 0.2916 T12: 0.0321 REMARK 3 T13: 0.0509 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 5.5949 L22: 6.4207 REMARK 3 L33: 2.7656 L12: -3.0049 REMARK 3 L13: 1.0909 L23: -0.0990 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: 0.4754 S13: 0.1899 REMARK 3 S21: -0.3164 S22: -0.3838 S23: -0.8143 REMARK 3 S31: -0.0301 S32: 0.4627 S33: 0.1408 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8061 -4.1540 52.5798 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.2623 REMARK 3 T33: 0.3567 T12: 0.0096 REMARK 3 T13: -0.1002 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 6.5947 L22: 4.8342 REMARK 3 L33: 4.8110 L12: -4.9134 REMARK 3 L13: -2.7617 L23: 4.4480 REMARK 3 S TENSOR REMARK 3 S11: -0.1685 S12: 0.1620 S13: 1.0262 REMARK 3 S21: 0.5892 S22: 0.1686 S23: -1.3771 REMARK 3 S31: -0.3065 S32: 0.3265 S33: 0.0691 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XPREP REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23425 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 41.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.93 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, SODIUM CHLORIDE, LITHIUM REMARK 280 CHLORIDE, AMMONIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.89350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.89350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -0.11412 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 125.52314 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 230 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 465 GLN A -1 REMARK 465 GLN A 0 REMARK 465 ASN A 77 REMARK 465 THR A 78 REMARK 465 PRO A 79 REMARK 465 VAL A 80 REMARK 465 SER A 81 REMARK 465 MET A 82 REMARK 465 THR A 83 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 MET B -3 REMARK 465 ALA B -2 REMARK 465 GLN B -1 REMARK 465 GLN B 0 REMARK 465 GLU B 68 REMARK 465 GLU B 69 REMARK 465 THR B 70 REMARK 465 ASN B 71 REMARK 465 ILE B 72 REMARK 465 GLY B 73 REMARK 465 CYS B 74 REMARK 465 ALA B 75 REMARK 465 VAL B 76 REMARK 465 ASN B 77 REMARK 465 THR B 78 REMARK 465 PRO B 79 REMARK 465 VAL B 80 REMARK 465 SER B 81 REMARK 465 MET B 82 REMARK 465 THR B 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 ASP A 34 CG OD1 OD2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 236 O HOH A 238 2.02 REMARK 500 O PRO B 67 O HOH B 101 2.09 REMARK 500 N MET A 1 O HOH A 201 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 -121.14 57.04 REMARK 500 ASN B 33 -122.41 50.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 101 DBREF 5EZU A 1 83 UNP P26672 A46_VACCW 1 83 DBREF 5EZU B 1 83 UNP P26672 A46_VACCW 1 83 SEQADV 5EZU GLY A -5 UNP P26672 EXPRESSION TAG SEQADV 5EZU SER A -4 UNP P26672 EXPRESSION TAG SEQADV 5EZU MET A -3 UNP P26672 EXPRESSION TAG SEQADV 5EZU ALA A -2 UNP P26672 EXPRESSION TAG SEQADV 5EZU GLN A -1 UNP P26672 EXPRESSION TAG SEQADV 5EZU GLN A 0 UNP P26672 EXPRESSION TAG SEQADV 5EZU GLY B -5 UNP P26672 EXPRESSION TAG SEQADV 5EZU SER B -4 UNP P26672 EXPRESSION TAG SEQADV 5EZU MET B -3 UNP P26672 EXPRESSION TAG SEQADV 5EZU ALA B -2 UNP P26672 EXPRESSION TAG SEQADV 5EZU GLN B -1 UNP P26672 EXPRESSION TAG SEQADV 5EZU GLN B 0 UNP P26672 EXPRESSION TAG SEQRES 1 A 89 GLY SER MET ALA GLN GLN MET ALA PHE ASP ILE SER VAL SEQRES 2 A 89 ASN ALA SER LYS THR ILE ASN ALA LEU VAL TYR PHE SER SEQRES 3 A 89 THR GLN GLN ASN LYS LEU VAL ILE ARG ASN GLU VAL ASN SEQRES 4 A 89 ASP THR HIS TYR THR VAL GLU PHE ASP ARG ASP LYS VAL SEQRES 5 A 89 VAL ASP THR PHE ILE SER TYR ASN ARG HIS ASN ASP THR SEQRES 6 A 89 ILE GLU ILE ARG GLY VAL LEU PRO GLU GLU THR ASN ILE SEQRES 7 A 89 GLY CYS ALA VAL ASN THR PRO VAL SER MET THR SEQRES 1 B 89 GLY SER MET ALA GLN GLN MET ALA PHE ASP ILE SER VAL SEQRES 2 B 89 ASN ALA SER LYS THR ILE ASN ALA LEU VAL TYR PHE SER SEQRES 3 B 89 THR GLN GLN ASN LYS LEU VAL ILE ARG ASN GLU VAL ASN SEQRES 4 B 89 ASP THR HIS TYR THR VAL GLU PHE ASP ARG ASP LYS VAL SEQRES 5 B 89 VAL ASP THR PHE ILE SER TYR ASN ARG HIS ASN ASP THR SEQRES 6 B 89 ILE GLU ILE ARG GLY VAL LEU PRO GLU GLU THR ASN ILE SEQRES 7 B 89 GLY CYS ALA VAL ASN THR PRO VAL SER MET THR HET MYR A 101 16 HETNAM MYR MYRISTIC ACID FORMUL 3 MYR C14 H28 O2 FORMUL 4 HOH *57(H2 O) SHEET 1 AA1 6 ALA A 2 ASN A 8 0 SHEET 2 AA1 6 THR A 59 VAL A 65 -1 O ILE A 62 N ILE A 5 SHEET 3 AA1 6 VAL A 47 ASN A 54 -1 N ASN A 54 O THR A 59 SHEET 4 AA1 6 ILE B 13 SER B 20 -1 O ALA B 15 N THR A 49 SHEET 5 AA1 6 LYS B 25 VAL B 32 -1 O VAL B 27 N TYR B 18 SHEET 6 AA1 6 THR B 35 ASP B 42 -1 O TYR B 37 N ASN B 30 SHEET 1 AA2 7 ASN A 71 ALA A 75 0 SHEET 2 AA2 7 THR A 35 PHE A 41 -1 N HIS A 36 O ALA A 75 SHEET 3 AA2 7 LYS A 25 VAL A 32 -1 N LEU A 26 O PHE A 41 SHEET 4 AA2 7 ILE A 13 SER A 20 -1 N LEU A 16 O ARG A 29 SHEET 5 AA2 7 VAL B 47 ASN B 54 -1 O THR B 49 N ALA A 15 SHEET 6 AA2 7 THR B 59 VAL B 65 -1 O VAL B 65 N ASP B 48 SHEET 7 AA2 7 ALA B 2 ASN B 8 -1 N PHE B 3 O GLY B 64 SITE 1 AC1 5 MET A 1 PHE A 3 ASN A 30 HOH A 206 SITE 2 AC1 5 THR B 49 CRYST1 65.787 59.580 47.257 90.00 117.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015201 0.000000 0.007980 0.00000 SCALE2 0.000000 0.016784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023900 0.00000