HEADER HYDROLASE 27-NOV-15 5F00 TITLE CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-[3-[(3-CHLORO-8- TITLE 2 QUINOLYL)AMINO]PHENYL]-5-METHYL-2,6-DIHYDRO-1,4-OXAZIN-3-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTYL PROTEASE 2,ASP 2,BETA-SITE AMYLOID PRECURSOR COMPND 5 PROTEIN CLEAVING ENZYME 1,BETA-SITE APP CLEAVING ENZYME 1,MEMAPSIN-2, COMPND 6 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2; COMPND 7 EC: 3.4.23.46; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE1, BACE, KIAA1149; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BANNER,J.BENZ,M.STIHLE,A.KUGLSTATTER REVDAT 3 29-NOV-17 5F00 1 REMARK REVDAT 2 25-MAY-16 5F00 1 JRNL REVDAT 1 24-FEB-16 5F00 0 JRNL AUTH B.KUHN,W.GUBA,J.HERT,D.BANNER,C.BISSANTZ,S.CECCARELLI, JRNL AUTH 2 W.HAAP,M.KORNER,A.KUGLSTATTER,C.LERNER,P.MATTEI,W.NEIDHART, JRNL AUTH 3 E.PINARD,M.G.RUDOLPH,T.SCHULZ-GASCH,T.WOLTERING,M.STAHL JRNL TITL A REAL-WORLD PERSPECTIVE ON MOLECULAR DESIGN. JRNL REF J.MED.CHEM. V. 59 4087 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26878596 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01875 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 36938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2570 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2922 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3049 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4148 ; 1.369 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;34.040 ;23.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;15.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.504 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2344 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1850 ; 0.815 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2995 ; 1.478 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1199 ; 1.993 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1153 ; 3.287 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5F00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 44.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04130 REMARK 200 FOR THE DATA SET : 20.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.72 REMARK 200 R MERGE FOR SHELL (I) : 0.37440 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M SODIUM FORMATE, 100MM HEPES, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.40400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.80800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.60600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 141.01000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.20200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.40400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 112.80800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 141.01000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.60600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.20200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 218 REMARK 465 GLY A 219 REMARK 465 PHE A 220 REMARK 465 PRO A 221 REMARK 465 LEU A 222 REMARK 465 ASN A 223 REMARK 465 GLN A 224 REMARK 465 SER A 225 REMARK 465 GLU A 226 REMARK 465 VAL A 227 REMARK 465 LEU A 228 REMARK 465 ALA A 229 REMARK 465 ASP A 372 REMARK 465 VAL A 373 REMARK 465 ALA A 374 REMARK 465 THR A 375 REMARK 465 SER A 376 REMARK 465 GLN A 377 REMARK 465 ASP A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 752 O HOH A 812 2.11 REMARK 500 O HOH A 703 O HOH A 818 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 150 52.18 -106.26 REMARK 500 PHE A 169 -62.79 -107.60 REMARK 500 ASP A 192 2.34 -68.15 REMARK 500 TRP A 258 -88.17 -133.50 REMARK 500 THR A 335 58.48 -141.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 895 DISTANCE = 6.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 202 O REMARK 620 2 THR A 205 O 80.2 REMARK 620 3 HOH A 814 O 77.3 139.1 REMARK 620 4 HOH A 816 O 149.5 78.9 105.1 REMARK 620 5 HOH A 687 O 108.9 93.7 125.8 94.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 242 O REMARK 620 2 TYR A 245 O 79.5 REMARK 620 3 HOH A 753 O 149.5 92.0 REMARK 620 4 HOH A 782 O 101.4 70.2 103.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5T8 A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EZX RELATED DB: PDB REMARK 900 RELATED ID: 5EZZ RELATED DB: PDB DBREF 5F00 A 57 446 UNP P56817 BACE1_HUMAN 57 446 SEQADV 5F00 ALA A 307 UNP P56817 LYS 307 CONFLICT SEQRES 1 A 390 ARG GLY SER PHE VAL GLU MET VAL ASP ASN LEU ARG GLY SEQRES 2 A 390 LYS SER GLY GLN GLY TYR TYR VAL GLU MET THR VAL GLY SEQRES 3 A 390 SER PRO PRO GLN THR LEU ASN ILE LEU VAL ASP THR GLY SEQRES 4 A 390 SER SER ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO PHE SEQRES 5 A 390 LEU HIS ARG TYR TYR GLN ARG GLN LEU SER SER THR TYR SEQRES 6 A 390 ARG ASP LEU ARG LYS GLY VAL TYR VAL PRO TYR THR GLN SEQRES 7 A 390 GLY LYS TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SER SEQRES 8 A 390 ILE PRO HIS GLY PRO ASN VAL THR VAL ARG ALA ASN ILE SEQRES 9 A 390 ALA ALA ILE THR GLU SER ASP LYS PHE PHE ILE ASN GLY SEQRES 10 A 390 SER ASN TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA GLU SEQRES 11 A 390 ILE ALA ARG PRO ASP ASP SER LEU GLU PRO PHE PHE ASP SEQRES 12 A 390 SER LEU VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SER SEQRES 13 A 390 LEU GLN LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SER SEQRES 14 A 390 GLU VAL LEU ALA SER VAL GLY GLY SER MET ILE ILE GLY SEQRES 15 A 390 GLY ILE ASP HIS SER LEU TYR THR GLY SER LEU TRP TYR SEQRES 16 A 390 THR PRO ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE ILE SEQRES 17 A 390 VAL ARG VAL GLU ILE ASN GLY GLN ASP LEU LYS MET ASP SEQRES 18 A 390 CYS LYS GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SER SEQRES 19 A 390 GLY THR THR ASN LEU ARG LEU PRO LYS LYS VAL PHE GLU SEQRES 20 A 390 ALA ALA VAL ALA SER ILE LYS ALA ALA SER SER THR GLU SEQRES 21 A 390 LYS PHE PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU VAL SEQRES 22 A 390 CYS TRP GLN ALA GLY THR THR PRO TRP ASN ILE PHE PRO SEQRES 23 A 390 VAL ILE SER LEU TYR LEU MET GLY GLU VAL THR ASN GLN SEQRES 24 A 390 SER PHE ARG ILE THR ILE LEU PRO GLN GLN TYR LEU ARG SEQRES 25 A 390 PRO VAL GLU ASP VAL ALA THR SER GLN ASP ASP CYS TYR SEQRES 26 A 390 LYS PHE ALA ILE SER GLN SER SER THR GLY THR VAL MET SEQRES 27 A 390 GLY ALA VAL ILE MET GLU GLY PHE TYR VAL VAL PHE ASP SEQRES 28 A 390 ARG ALA ARG LYS ARG ILE GLY PHE ALA VAL SER ALA CYS SEQRES 29 A 390 HIS VAL HIS ASP GLU PHE ARG THR ALA ALA VAL GLU GLY SEQRES 30 A 390 PRO PHE VAL THR LEU ASP MET GLU ASP CYS GLY TYR ASN HET NA A 501 1 HET NA A 502 1 HET DMS A 503 4 HET 5T8 A 504 26 HETNAM NA SODIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM 5T8 (5~{R})-5-[3-[(3-CHLORANYLQUINOLIN-8-YL)AMINO]PHENYL]- HETNAM 2 5T8 5-METHYL-2,6-DIHYDRO-1,4-OXAZIN-3-AMINE FORMUL 2 NA 2(NA 1+) FORMUL 4 DMS C2 H6 O S FORMUL 5 5T8 C20 H19 CL N4 O FORMUL 6 HOH *295(H2 O) HELIX 1 AA1 GLN A 114 SER A 118 5 5 HELIX 2 AA2 TYR A 184 ALA A 188 5 5 HELIX 3 AA3 PRO A 196 THR A 205 1 10 HELIX 4 AA4 ASP A 241 SER A 243 5 3 HELIX 5 AA5 ASP A 277 TYR A 283 5 7 HELIX 6 AA6 LYS A 299 SER A 313 1 15 HELIX 7 AA7 PRO A 319 LEU A 324 1 6 HELIX 8 AA8 PRO A 337 PHE A 341 5 5 HELIX 9 AA9 LEU A 362 TYR A 366 1 5 HELIX 10 AB1 GLY A 395 GLU A 400 1 6 HELIX 11 AB2 ARG A 408 ARG A 410 5 3 HELIX 12 AB3 ASP A 439 GLY A 444 5 6 SHEET 1 AA1 9 ARG A 122 PRO A 131 0 SHEET 2 AA1 9 LYS A 136 SER A 147 -1 O TRP A 137 N VAL A 130 SHEET 3 AA1 9 TYR A 76 VAL A 81 -1 N THR A 80 O SER A 147 SHEET 4 AA1 9 LEU A 67 GLY A 69 -1 N ARG A 68 O TYR A 76 SHEET 5 AA1 9 VAL A 231 ILE A 237 -1 O GLY A 233 N LEU A 67 SHEET 6 AA1 9 PHE A 211 CYS A 216 -1 N CYS A 216 O GLY A 232 SHEET 7 AA1 9 PHE A 402 ASP A 407 -1 O PHE A 406 N PHE A 211 SHEET 8 AA1 9 ARG A 412 SER A 418 -1 O GLY A 414 N VAL A 405 SHEET 9 AA1 9 TYR A 245 PRO A 253 -1 N THR A 252 O ILE A 413 SHEET 1 AA213 ARG A 122 PRO A 131 0 SHEET 2 AA213 LYS A 136 SER A 147 -1 O TRP A 137 N VAL A 130 SHEET 3 AA213 VAL A 156 ASP A 167 -1 O ASP A 167 N LYS A 136 SHEET 4 AA213 PHE A 99 GLY A 102 1 N VAL A 101 O ILE A 163 SHEET 5 AA213 GLY A 178 GLY A 181 -1 O ILE A 179 N ALA A 100 SHEET 6 AA213 GLN A 86 ASP A 93 1 N LEU A 91 O LEU A 180 SHEET 7 AA213 TYR A 76 VAL A 81 -1 N VAL A 81 O GLN A 86 SHEET 8 AA213 LEU A 67 GLY A 69 -1 N ARG A 68 O TYR A 76 SHEET 9 AA213 VAL A 231 ILE A 237 -1 O GLY A 233 N LEU A 67 SHEET 10 AA213 PHE A 211 CYS A 216 -1 N CYS A 216 O GLY A 232 SHEET 11 AA213 PHE A 402 ASP A 407 -1 O PHE A 406 N PHE A 211 SHEET 12 AA213 ARG A 412 SER A 418 -1 O GLY A 414 N VAL A 405 SHEET 13 AA213 TYR A 245 PRO A 253 -1 N THR A 252 O ILE A 413 SHEET 1 AA3 5 GLN A 272 ASP A 273 0 SHEET 2 AA3 5 ILE A 264 ILE A 269 -1 N ILE A 269 O GLN A 272 SHEET 3 AA3 5 ILE A 344 MET A 349 -1 O TYR A 347 N ARG A 266 SHEET 4 AA3 5 GLN A 355 ILE A 361 -1 O ILE A 359 N LEU A 346 SHEET 5 AA3 5 ALA A 430 VAL A 436 -1 O PHE A 435 N SER A 356 SHEET 1 AA4 4 SER A 286 VAL A 288 0 SHEET 2 AA4 4 THR A 392 MET A 394 1 O MET A 394 N ILE A 287 SHEET 3 AA4 4 LEU A 295 PRO A 298 -1 N ARG A 296 O VAL A 393 SHEET 4 AA4 4 ILE A 385 SER A 388 1 O SER A 386 N LEU A 297 SHEET 1 AA5 3 VAL A 329 CYS A 330 0 SHEET 2 AA5 3 CYS A 380 PHE A 383 -1 O TYR A 381 N VAL A 329 SHEET 3 AA5 3 LEU A 367 VAL A 370 -1 N VAL A 370 O CYS A 380 SSBOND 1 CYS A 216 CYS A 420 1555 1555 2.06 SSBOND 2 CYS A 278 CYS A 443 1555 1555 2.05 SSBOND 3 CYS A 330 CYS A 380 1555 1555 2.05 LINK O VAL A 202 NA NA A 502 1555 1555 2.50 LINK O THR A 205 NA NA A 502 1555 1555 2.39 LINK O HIS A 242 NA NA A 501 1555 1555 2.47 LINK O TYR A 245 NA NA A 501 1555 1555 2.54 LINK NA NA A 501 O HOH A 753 1555 1555 2.38 LINK NA NA A 501 O HOH A 782 1555 1555 2.48 LINK NA NA A 502 O HOH A 814 1555 1555 2.37 LINK NA NA A 502 O HOH A 816 1555 1555 2.45 LINK NA NA A 502 O HOH A 687 1555 1555 2.27 CISPEP 1 SER A 83 PRO A 84 0 -0.75 CISPEP 2 ARG A 189 PRO A 190 0 6.97 CISPEP 3 TYR A 283 ASP A 284 0 -0.38 CISPEP 4 GLY A 433 PRO A 434 0 0.00 SITE 1 AC1 4 HIS A 242 TYR A 245 HOH A 753 HOH A 782 SITE 1 AC2 5 VAL A 202 THR A 205 HOH A 687 HOH A 814 SITE 2 AC2 5 HOH A 816 SITE 1 AC3 5 ARG A 157 ALA A 158 ASN A 159 GLU A 195 SITE 2 AC3 5 SER A 200 SITE 1 AC4 13 GLY A 72 GLY A 74 LEU A 91 ASP A 93 SITE 2 AC4 13 GLY A 95 TYR A 132 ILE A 171 ILE A 179 SITE 3 AC4 13 ASP A 289 SER A 290 GLY A 291 THR A 293 SITE 4 AC4 13 ALA A 396 CRYST1 103.504 103.504 169.212 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009661 0.005578 0.000000 0.00000 SCALE2 0.000000 0.011156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005910 0.00000