HEADER STRUCTURAL PROTEIN/PROTEIN BINDING 03-DEC-15 5F3X TITLE CRYSTAL STRUCTURE OF HARMONIN NPDZ1 IN COMPLEX WITH ANKS4B SAM-PBM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HARMONIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: NPDZ1, UNP RESIDUES 1-194; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANKYRIN REPEAT AND SAM DOMAIN-CONTAINING PROTEIN 4B; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: SAM-PBM, UNP RESIDUES 345-423; COMPND 10 SYNONYM: ANKS4B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USH1C, AIE75; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: ANKS4B, HARP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, STRUCTURAL PROTEIN, PROTEIN BINDING, STRUCTURAL PROTEIN- KEYWDS 2 PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,Y.HE,Q.LU,M.ZHANG REVDAT 2 08-NOV-23 5F3X 1 REMARK REVDAT 1 16-MAR-16 5F3X 0 JRNL AUTH J.LI,Y.HE,Q.LU,M.ZHANG JRNL TITL MECHANISTIC BASIS OF ORGANIZATION OF THE JRNL TITL 2 HARMONIN/USH1C-MEDIATED BRUSH BORDER MICROVILLI TIP-LINK JRNL TITL 3 COMPLEX JRNL REF DEV.CELL V. 36 179 2016 JRNL REFN ISSN 1534-5807 JRNL PMID 26812017 JRNL DOI 10.1016/J.DEVCEL.2015.12.020 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5134 - 5.2897 0.97 2898 138 0.2125 0.2378 REMARK 3 2 5.2897 - 4.2018 1.00 2984 138 0.1850 0.2363 REMARK 3 3 4.2018 - 3.6716 1.00 3020 126 0.1864 0.2237 REMARK 3 4 3.6716 - 3.3363 1.00 2928 169 0.2469 0.2994 REMARK 3 5 3.3363 - 3.0974 1.00 2995 142 0.2535 0.2478 REMARK 3 6 3.0974 - 2.9149 1.00 2947 150 0.2977 0.3480 REMARK 3 7 2.9149 - 2.7690 1.00 2998 116 0.3194 0.4000 REMARK 3 8 2.7690 - 2.6485 1.00 3019 154 0.3958 0.4344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4133 REMARK 3 ANGLE : 0.994 5622 REMARK 3 CHIRALITY : 0.058 672 REMARK 3 PLANARITY : 0.008 728 REMARK 3 DIHEDRAL : 14.617 2506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7236 16.6029 3.6715 REMARK 3 T TENSOR REMARK 3 T11: 1.3137 T22: 0.8298 REMARK 3 T33: 0.4787 T12: 0.3200 REMARK 3 T13: -0.0224 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 5.8735 L22: 2.5930 REMARK 3 L33: 1.4508 L12: -2.6917 REMARK 3 L13: 1.3954 L23: -0.4759 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: -0.6006 S13: -0.6377 REMARK 3 S21: 0.0178 S22: 0.3439 S23: 0.1261 REMARK 3 S31: 0.4623 S32: 0.2476 S33: -0.2034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8539 30.5781 0.5348 REMARK 3 T TENSOR REMARK 3 T11: 0.8767 T22: 0.5270 REMARK 3 T33: 0.5141 T12: 0.1314 REMARK 3 T13: -0.0608 T23: -0.0867 REMARK 3 L TENSOR REMARK 3 L11: 7.5645 L22: 5.4641 REMARK 3 L33: 4.3036 L12: -0.0246 REMARK 3 L13: 1.5535 L23: -2.5425 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: -0.8558 S13: -0.6340 REMARK 3 S21: 0.2212 S22: 0.1353 S23: 0.3451 REMARK 3 S31: 0.5840 S32: -0.2353 S33: 0.0176 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 387 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5202 50.5996 -6.8796 REMARK 3 T TENSOR REMARK 3 T11: 0.6065 T22: 0.4247 REMARK 3 T33: 0.5394 T12: 0.0224 REMARK 3 T13: 0.0008 T23: -0.2277 REMARK 3 L TENSOR REMARK 3 L11: 4.4883 L22: 9.0738 REMARK 3 L33: 4.9458 L12: -2.5203 REMARK 3 L13: 0.6243 L23: -6.2899 REMARK 3 S TENSOR REMARK 3 S11: -0.2433 S12: -0.2458 S13: 0.6214 REMARK 3 S21: 0.7583 S22: 0.4246 S23: -0.7435 REMARK 3 S31: -0.1445 S32: -0.2796 S33: -0.1172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9128 23.9200 11.9431 REMARK 3 T TENSOR REMARK 3 T11: 1.1404 T22: 0.9128 REMARK 3 T33: 0.4322 T12: -0.3032 REMARK 3 T13: 0.0166 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 1.3087 L22: 7.4855 REMARK 3 L33: 1.0038 L12: 0.2501 REMARK 3 L13: 0.7830 L23: -0.6527 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: 0.2566 S13: -0.1826 REMARK 3 S21: 0.4225 S22: 0.3755 S23: 0.5072 REMARK 3 S31: 0.4863 S32: -0.3823 S33: -0.2982 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 91 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5570 48.9763 8.9127 REMARK 3 T TENSOR REMARK 3 T11: 0.7395 T22: 0.6848 REMARK 3 T33: 0.5080 T12: -0.2177 REMARK 3 T13: -0.1191 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 5.3360 L22: 6.2437 REMARK 3 L33: 3.6674 L12: -1.2930 REMARK 3 L13: -1.3165 L23: -2.7614 REMARK 3 S TENSOR REMARK 3 S11: -0.2033 S12: -0.1906 S13: -0.0565 REMARK 3 S21: 0.8697 S22: 0.2084 S23: 0.6303 REMARK 3 S31: -0.0670 S32: -0.6147 S33: 0.0363 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 387 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2971 60.9411 1.3075 REMARK 3 T TENSOR REMARK 3 T11: 0.4938 T22: 0.5058 REMARK 3 T33: 0.5975 T12: -0.1021 REMARK 3 T13: -0.2106 T23: -0.1084 REMARK 3 L TENSOR REMARK 3 L11: 5.2953 L22: 7.0460 REMARK 3 L33: 4.6056 L12: 2.1203 REMARK 3 L13: -4.3064 L23: -2.3607 REMARK 3 S TENSOR REMARK 3 S11: 0.5768 S12: -0.3175 S13: -0.5279 REMARK 3 S21: 0.8001 S22: -0.2302 S23: -1.1161 REMARK 3 S31: -0.2662 S32: 0.0916 S33: -0.2143 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24978 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.649 REMARK 200 RESOLUTION RANGE LOW (A) : 31.511 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K1R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M NACL, 0.1 M BIS-TRIS, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.55133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 LEU A 93 REMARK 465 GLU A 191 REMARK 465 SER A 192 REMARK 465 GLY A 193 REMARK 465 GLY A 194 REMARK 465 GLY B 343 REMARK 465 SER B 344 REMARK 465 GLU B 345 REMARK 465 GLU B 346 REMARK 465 ASP B 347 REMARK 465 ALA B 348 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLY C 193 REMARK 465 GLY C 194 REMARK 465 GLY D 343 REMARK 465 SER D 344 REMARK 465 GLU D 345 REMARK 465 GLU D 346 REMARK 465 ASP D 347 REMARK 465 ALA D 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ASN A 19 CG OD1 ND2 REMARK 470 MET A 32 CG SD CE REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ARG B 372 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 414 CG CD OE1 NE2 REMARK 470 ASP C 2 CG OD1 OD2 REMARK 470 ARG C 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 10 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 18 CG CD OE1 OE2 REMARK 470 MET C 32 CG SD CE REMARK 470 MET C 37 CG SD CE REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 GLN C 76 CG CD OE1 NE2 REMARK 470 ARG C 80 NE CZ NH1 NH2 REMARK 470 ARG C 81 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 84 CG CD CE NZ REMARK 470 LYS C 86 CG CD CE NZ REMARK 470 GLU C 87 CG CD OE1 OE2 REMARK 470 ASP C 91 CG OD1 OD2 REMARK 470 ARG C 92 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 93 CG CD1 CD2 REMARK 470 LYS C 119 CG CD CE NZ REMARK 470 LYS C 158 CG CD CE NZ REMARK 470 LYS C 163 CE NZ REMARK 470 ASP C 186 CG OD1 OD2 REMARK 470 GLU C 191 CG CD OE1 OE2 REMARK 470 GLN D 413 CG CD OE1 NE2 REMARK 470 GLN D 414 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 63 OD1 ASP A 75 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 45 NH1 ARG C 7 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F3Y RELATED DB: PDB DBREF 5F3X A 1 194 UNP Q9Y6N9 USH1C_HUMAN 1 194 DBREF 5F3X B 345 423 UNP Q8K3X6 ANS4B_MOUSE 345 423 DBREF 5F3X C 1 194 UNP Q9Y6N9 USH1C_HUMAN 1 194 DBREF 5F3X D 345 423 UNP Q8K3X6 ANS4B_MOUSE 345 423 SEQADV 5F3X GLY A -1 UNP Q9Y6N9 EXPRESSION TAG SEQADV 5F3X SER A 0 UNP Q9Y6N9 EXPRESSION TAG SEQADV 5F3X GLY B 343 UNP Q8K3X6 EXPRESSION TAG SEQADV 5F3X SER B 344 UNP Q8K3X6 EXPRESSION TAG SEQADV 5F3X GLY C -1 UNP Q9Y6N9 EXPRESSION TAG SEQADV 5F3X SER C 0 UNP Q9Y6N9 EXPRESSION TAG SEQADV 5F3X GLY D 343 UNP Q8K3X6 EXPRESSION TAG SEQADV 5F3X SER D 344 UNP Q8K3X6 EXPRESSION TAG SEQRES 1 A 196 GLY SER MET ASP ARG LYS VAL ALA ARG GLU PHE ARG HIS SEQRES 2 A 196 LYS VAL ASP PHE LEU ILE GLU ASN ASP ALA GLU LYS ASP SEQRES 3 A 196 TYR LEU TYR ASP VAL LEU ARG MET TYR HIS GLN THR MET SEQRES 4 A 196 ASP VAL ALA VAL LEU VAL GLY ASP LEU LYS LEU VAL ILE SEQRES 5 A 196 ASN GLU PRO SER ARG LEU PRO LEU PHE ASP ALA ILE ARG SEQRES 6 A 196 PRO LEU ILE PRO LEU LYS HIS GLN VAL GLU TYR ASP GLN SEQRES 7 A 196 LEU THR PRO ARG ARG SER ARG LYS LEU LYS GLU VAL ARG SEQRES 8 A 196 LEU ASP ARG LEU HIS PRO GLU GLY LEU GLY LEU SER VAL SEQRES 9 A 196 ARG GLY GLY LEU GLU PHE GLY CYS GLY LEU PHE ILE SER SEQRES 10 A 196 HIS LEU ILE LYS GLY GLY GLN ALA ASP SER VAL GLY LEU SEQRES 11 A 196 GLN VAL GLY ASP GLU ILE VAL ARG ILE ASN GLY TYR SER SEQRES 12 A 196 ILE SER SER CYS THR HIS GLU GLU VAL ILE ASN LEU ILE SEQRES 13 A 196 ARG THR LYS LYS THR VAL SER ILE LYS VAL ARG HIS ILE SEQRES 14 A 196 GLY LEU ILE PRO VAL LYS SER SER PRO ASP GLU PRO LEU SEQRES 15 A 196 THR TRP GLN TYR VAL ASP GLN PHE VAL SER GLU SER GLY SEQRES 16 A 196 GLY SEQRES 1 B 81 GLY SER GLU GLU ASP ALA VAL ASP ALA THR PRO LEU GLU SEQRES 2 B 81 VAL PHE LEU GLN SER GLN HIS LEU GLU GLU PHE LEU PRO SEQRES 3 B 81 ILE PHE MET ARG GLU GLN ILE ASP LEU GLU ALA LEU LEU SEQRES 4 B 81 LEU CYS SER ASP GLU ASP LEU GLN ASN ILE HIS MET GLN SEQRES 5 B 81 LEU GLY PRO ARG LYS LYS VAL LEU SER ALA ILE ASP LYS SEQRES 6 B 81 ARG LYS GLN VAL LEU GLN GLN PRO GLY GLN LEU VAL ASP SEQRES 7 B 81 THR SER LEU SEQRES 1 C 196 GLY SER MET ASP ARG LYS VAL ALA ARG GLU PHE ARG HIS SEQRES 2 C 196 LYS VAL ASP PHE LEU ILE GLU ASN ASP ALA GLU LYS ASP SEQRES 3 C 196 TYR LEU TYR ASP VAL LEU ARG MET TYR HIS GLN THR MET SEQRES 4 C 196 ASP VAL ALA VAL LEU VAL GLY ASP LEU LYS LEU VAL ILE SEQRES 5 C 196 ASN GLU PRO SER ARG LEU PRO LEU PHE ASP ALA ILE ARG SEQRES 6 C 196 PRO LEU ILE PRO LEU LYS HIS GLN VAL GLU TYR ASP GLN SEQRES 7 C 196 LEU THR PRO ARG ARG SER ARG LYS LEU LYS GLU VAL ARG SEQRES 8 C 196 LEU ASP ARG LEU HIS PRO GLU GLY LEU GLY LEU SER VAL SEQRES 9 C 196 ARG GLY GLY LEU GLU PHE GLY CYS GLY LEU PHE ILE SER SEQRES 10 C 196 HIS LEU ILE LYS GLY GLY GLN ALA ASP SER VAL GLY LEU SEQRES 11 C 196 GLN VAL GLY ASP GLU ILE VAL ARG ILE ASN GLY TYR SER SEQRES 12 C 196 ILE SER SER CYS THR HIS GLU GLU VAL ILE ASN LEU ILE SEQRES 13 C 196 ARG THR LYS LYS THR VAL SER ILE LYS VAL ARG HIS ILE SEQRES 14 C 196 GLY LEU ILE PRO VAL LYS SER SER PRO ASP GLU PRO LEU SEQRES 15 C 196 THR TRP GLN TYR VAL ASP GLN PHE VAL SER GLU SER GLY SEQRES 16 C 196 GLY SEQRES 1 D 81 GLY SER GLU GLU ASP ALA VAL ASP ALA THR PRO LEU GLU SEQRES 2 D 81 VAL PHE LEU GLN SER GLN HIS LEU GLU GLU PHE LEU PRO SEQRES 3 D 81 ILE PHE MET ARG GLU GLN ILE ASP LEU GLU ALA LEU LEU SEQRES 4 D 81 LEU CYS SER ASP GLU ASP LEU GLN ASN ILE HIS MET GLN SEQRES 5 D 81 LEU GLY PRO ARG LYS LYS VAL LEU SER ALA ILE ASP LYS SEQRES 6 D 81 ARG LYS GLN VAL LEU GLN GLN PRO GLY GLN LEU VAL ASP SEQRES 7 D 81 THR SER LEU HET CL A 201 1 HET CL C 201 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *19(H2 O) HELIX 1 AA1 MET A 1 ILE A 17 1 17 HELIX 2 AA2 ASN A 19 MET A 37 1 19 HELIX 3 AA3 ASP A 38 LYS A 47 1 10 HELIX 4 AA4 LEU A 56 ARG A 63 1 8 HELIX 5 AA5 PRO A 64 ILE A 66 5 3 HELIX 6 AA6 PRO A 67 THR A 78 1 12 HELIX 7 AA7 LEU A 106 GLY A 109 5 4 HELIX 8 AA8 GLY A 121 GLY A 127 1 7 HELIX 9 AA9 THR A 146 ARG A 155 1 10 HELIX 10 AB1 VAL A 185 VAL A 189 1 5 HELIX 11 AB2 THR B 352 GLN B 361 1 10 HELIX 12 AB3 HIS B 362 GLU B 365 5 4 HELIX 13 AB4 PHE B 366 GLU B 373 1 8 HELIX 14 AB5 ASP B 376 LEU B 382 1 7 HELIX 15 AB6 SER B 384 ILE B 391 1 8 HELIX 16 AB7 GLN B 394 GLN B 414 1 21 HELIX 17 AB8 ARG C 3 ILE C 17 1 15 HELIX 18 AB9 ASN C 19 MET C 37 1 19 HELIX 19 AC1 ASP C 38 LYS C 47 1 10 HELIX 20 AC2 GLU C 52 ARG C 55 5 4 HELIX 21 AC3 LEU C 56 ARG C 63 1 8 HELIX 22 AC4 PRO C 64 ILE C 66 5 3 HELIX 23 AC5 PRO C 67 THR C 78 1 12 HELIX 24 AC6 LEU C 106 GLY C 109 5 4 HELIX 25 AC7 GLY C 121 GLY C 127 1 7 HELIX 26 AC8 THR C 146 ARG C 155 1 10 HELIX 27 AC9 VAL C 185 SER C 192 1 8 HELIX 28 AD1 THR D 352 GLN D 361 1 10 HELIX 29 AD2 HIS D 362 GLU D 365 5 4 HELIX 30 AD3 PHE D 366 GLU D 373 1 8 HELIX 31 AD4 ASP D 376 LEU D 382 1 7 HELIX 32 AD5 SER D 384 ILE D 391 1 8 HELIX 33 AD6 GLN D 394 GLN D 414 1 21 SHEET 1 AA1 4 LEU A 85 ASP A 91 0 SHEET 2 AA1 4 THR A 159 HIS A 166 -1 O VAL A 164 N LYS A 86 SHEET 3 AA1 4 ASP A 132 ILE A 137 -1 N GLU A 133 O ARG A 165 SHEET 4 AA1 4 TYR A 140 SER A 141 -1 O TYR A 140 N ILE A 137 SHEET 1 AA2 6 LEU A 85 ASP A 91 0 SHEET 2 AA2 6 THR A 159 HIS A 166 -1 O VAL A 164 N LYS A 86 SHEET 3 AA2 6 ASP A 132 ILE A 137 -1 N GLU A 133 O ARG A 165 SHEET 4 AA2 6 CYS A 110 LEU A 117 -1 N LEU A 112 O ILE A 134 SHEET 5 AA2 6 LEU A 100 GLY A 105 -1 N ARG A 103 O PHE A 113 SHEET 6 AA2 6 THR B 421 LEU B 423 -1 O LEU B 423 N LEU A 100 SHEET 1 AA3 2 LEU A 169 VAL A 172 0 SHEET 2 AA3 2 THR A 181 TYR A 184 -1 O THR A 181 N VAL A 172 SHEET 1 AA4 4 LEU C 85 ASP C 91 0 SHEET 2 AA4 4 THR C 159 HIS C 166 -1 O ILE C 162 N VAL C 88 SHEET 3 AA4 4 ASP C 132 ILE C 137 -1 N GLU C 133 O ARG C 165 SHEET 4 AA4 4 TYR C 140 SER C 141 -1 O TYR C 140 N ILE C 137 SHEET 1 AA5 6 LEU C 85 ASP C 91 0 SHEET 2 AA5 6 THR C 159 HIS C 166 -1 O ILE C 162 N VAL C 88 SHEET 3 AA5 6 ASP C 132 ILE C 137 -1 N GLU C 133 O ARG C 165 SHEET 4 AA5 6 CYS C 110 LEU C 117 -1 N LEU C 112 O ILE C 134 SHEET 5 AA5 6 LEU C 100 GLY C 105 -1 N ARG C 103 O PHE C 113 SHEET 6 AA5 6 THR D 421 LEU D 423 -1 O LEU D 423 N LEU C 100 SHEET 1 AA6 2 LEU C 169 VAL C 172 0 SHEET 2 AA6 2 THR C 181 TYR C 184 -1 O THR C 181 N VAL C 172 SITE 1 AC1 5 ARG A 136 TYR A 140 SER A 141 ASP B 350 SITE 2 AC1 5 ALA B 351 SITE 1 AC2 5 ARG C 136 TYR C 140 SER C 141 ASP D 350 SITE 2 AC2 5 ALA D 351 CRYST1 124.566 124.566 49.654 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008028 0.004635 0.000000 0.00000 SCALE2 0.000000 0.009270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020139 0.00000