HEADER VIRAL PROTEIN 03-DEC-15 5F4O TITLE PROTRUDING DOMAIN OF GII.17 NOROVIRUS KAWASAKI308 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-530); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS SOURCE 3 HU/GII/JP/2015/GII.P17_GII.17/KAWASAKI308; SOURCE 4 ORGANISM_TAXID: 1634342; SOURCE 5 GENE: VP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 3 10-JAN-24 5F4O 1 REMARK REVDAT 2 24-FEB-16 5F4O 1 JRNL REVDAT 1 13-JAN-16 5F4O 0 JRNL AUTH B.K.SINGH,A.KOROMYSLOVA,L.HEFELE,C.GURTH,G.S.HANSMAN JRNL TITL STRUCTURAL EVOLUTION OF THE EMERGING 2014-2015 GII.17 JRNL TITL 2 NOROVIRUSES. JRNL REF J.VIROL. V. 90 2710 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26699640 JRNL DOI 10.1128/JVI.03119-15 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 84129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5012 - 4.9382 0.92 2728 146 0.1567 0.1809 REMARK 3 2 4.9382 - 3.9204 0.94 2668 140 0.1264 0.1303 REMARK 3 3 3.9204 - 3.4251 0.95 2670 141 0.1476 0.1515 REMARK 3 4 3.4251 - 3.1120 0.96 2694 142 0.1485 0.1759 REMARK 3 5 3.1120 - 2.8890 0.97 2699 142 0.1479 0.1513 REMARK 3 6 2.8890 - 2.7187 0.97 2658 140 0.1509 0.1799 REMARK 3 7 2.7187 - 2.5826 0.92 2578 136 0.1474 0.1818 REMARK 3 8 2.5826 - 2.4701 0.95 2599 137 0.1475 0.1805 REMARK 3 9 2.4701 - 2.3751 0.96 2645 139 0.1400 0.1623 REMARK 3 10 2.3751 - 2.2931 0.97 2647 139 0.1362 0.1584 REMARK 3 11 2.2931 - 2.2214 0.97 2680 141 0.1354 0.1671 REMARK 3 12 2.2214 - 2.1579 0.98 2685 142 0.1352 0.1571 REMARK 3 13 2.1579 - 2.1011 0.98 2679 140 0.1429 0.1880 REMARK 3 14 2.1011 - 2.0498 0.98 2695 141 0.1399 0.1702 REMARK 3 15 2.0498 - 2.0032 0.98 2679 142 0.1378 0.1722 REMARK 3 16 2.0032 - 1.9606 0.98 2673 140 0.1368 0.1555 REMARK 3 17 1.9606 - 1.9214 0.98 2684 142 0.1380 0.1430 REMARK 3 18 1.9214 - 1.8851 0.98 2688 141 0.1468 0.2080 REMARK 3 19 1.8851 - 1.8515 0.98 2685 142 0.1531 0.1658 REMARK 3 20 1.8515 - 1.8201 0.94 2569 135 0.1614 0.2186 REMARK 3 21 1.8201 - 1.7907 0.95 2611 137 0.1661 0.2127 REMARK 3 22 1.7907 - 1.7632 0.97 2629 138 0.1688 0.1997 REMARK 3 23 1.7632 - 1.7372 0.97 2647 139 0.1788 0.2144 REMARK 3 24 1.7372 - 1.7128 0.97 2620 138 0.1872 0.2049 REMARK 3 25 1.7128 - 1.6896 0.98 2675 141 0.1990 0.2451 REMARK 3 26 1.6896 - 1.6677 0.98 2674 139 0.2168 0.2767 REMARK 3 27 1.6677 - 1.6468 0.99 2668 141 0.2254 0.2719 REMARK 3 28 1.6468 - 1.6270 0.99 2718 143 0.2286 0.2385 REMARK 3 29 1.6270 - 1.6081 0.99 2693 142 0.2474 0.2652 REMARK 3 30 1.6081 - 1.5900 0.99 2684 141 0.2660 0.2886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4989 REMARK 3 ANGLE : 1.189 6814 REMARK 3 CHIRALITY : 0.051 729 REMARK 3 PLANARITY : 0.007 918 REMARK 3 DIHEDRAL : 12.592 1815 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6322 4.3021 -6.4266 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.1338 REMARK 3 T33: 0.1605 T12: 0.0172 REMARK 3 T13: 0.0014 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.0171 L22: 0.8579 REMARK 3 L33: 0.7181 L12: 0.3745 REMARK 3 L13: 0.1588 L23: 0.3964 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: -0.0294 S13: 0.0968 REMARK 3 S21: -0.0178 S22: -0.1095 S23: 0.1349 REMARK 3 S31: -0.0668 S32: -0.1177 S33: 0.0752 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 348 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2535 7.1993 -16.3071 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.1479 REMARK 3 T33: 0.1600 T12: 0.0386 REMARK 3 T13: -0.0249 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.1023 L22: 1.3767 REMARK 3 L33: 0.7433 L12: -0.0884 REMARK 3 L13: 0.0104 L23: 0.5852 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.1087 S13: 0.1873 REMARK 3 S21: -0.1700 S22: -0.1048 S23: 0.1414 REMARK 3 S31: -0.1595 S32: -0.1505 S33: 0.0679 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 423 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2427 18.0224 7.5438 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1856 REMARK 3 T33: 0.2236 T12: -0.0447 REMARK 3 T13: 0.0245 T23: -0.0837 REMARK 3 L TENSOR REMARK 3 L11: 0.9549 L22: 1.0503 REMARK 3 L33: 1.3140 L12: 0.1522 REMARK 3 L13: 0.1379 L23: 0.4143 REMARK 3 S TENSOR REMARK 3 S11: 0.0917 S12: -0.2727 S13: 0.2966 REMARK 3 S21: 0.1513 S22: -0.1202 S23: 0.0383 REMARK 3 S31: -0.1631 S32: -0.0003 S33: -0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9085 -8.1429 5.1564 REMARK 3 T TENSOR REMARK 3 T11: 0.1240 T22: 0.1334 REMARK 3 T33: 0.1414 T12: -0.0276 REMARK 3 T13: -0.0091 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.5537 L22: 1.2971 REMARK 3 L33: 1.6051 L12: -0.1998 REMARK 3 L13: -0.4656 L23: -0.4599 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: -0.1763 S13: -0.0017 REMARK 3 S21: 0.0669 S22: -0.0398 S23: 0.0447 REMARK 3 S31: -0.0538 S32: 0.0309 S33: -0.0567 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 248 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5029 -5.1890 -7.2776 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.1344 REMARK 3 T33: 0.1547 T12: 0.0086 REMARK 3 T13: 0.0076 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.4754 L22: 0.9405 REMARK 3 L33: 1.3085 L12: 0.4257 REMARK 3 L13: -0.5268 L23: -0.6850 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.0222 S13: -0.0004 REMARK 3 S21: -0.0337 S22: -0.0807 S23: -0.1433 REMARK 3 S31: -0.0125 S32: 0.1196 S33: 0.0595 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4374 2.6275 -16.1188 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.1293 REMARK 3 T33: 0.1032 T12: 0.0208 REMARK 3 T13: 0.0341 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.0032 L22: 1.6595 REMARK 3 L33: 1.0016 L12: 0.1229 REMARK 3 L13: 0.4255 L23: -0.6605 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.0814 S13: 0.0652 REMARK 3 S21: -0.0510 S22: -0.0841 S23: -0.0531 REMARK 3 S31: -0.0254 S32: 0.0791 S33: 0.0482 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 348 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.7374 -7.7845 -16.4024 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1536 REMARK 3 T33: 0.1203 T12: 0.0264 REMARK 3 T13: 0.0159 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.0549 L22: 1.2272 REMARK 3 L33: 0.8449 L12: -0.0090 REMARK 3 L13: -0.0264 L23: -0.5643 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.1082 S13: -0.0626 REMARK 3 S21: -0.1288 S22: -0.1006 S23: -0.0719 REMARK 3 S31: 0.0666 S32: 0.1155 S33: 0.0365 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 423 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4476 -15.0070 0.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1291 REMARK 3 T33: 0.1538 T12: -0.0145 REMARK 3 T13: -0.0126 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.7109 L22: 0.6192 REMARK 3 L33: 1.6333 L12: 0.0783 REMARK 3 L13: 0.1300 L23: -0.2264 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -0.0912 S13: -0.1341 REMARK 3 S21: 0.0104 S22: -0.0672 S23: -0.0644 REMARK 3 S31: 0.0827 S32: 0.0251 S33: -0.0061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1778 -14.9448 16.7090 REMARK 3 T TENSOR REMARK 3 T11: 0.2165 T22: 0.2748 REMARK 3 T33: 0.2310 T12: -0.0514 REMARK 3 T13: 0.0124 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 2.3591 L22: 1.6820 REMARK 3 L33: 2.1155 L12: 0.1145 REMARK 3 L13: 0.7058 L23: -0.5031 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: -0.3859 S13: -0.0445 REMARK 3 S21: 0.2580 S22: -0.0091 S23: 0.4364 REMARK 3 S31: -0.1137 S32: -0.1717 S33: -0.0411 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 485 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5160 -21.3313 8.1753 REMARK 3 T TENSOR REMARK 3 T11: 0.1694 T22: 0.1837 REMARK 3 T33: 0.2621 T12: -0.0626 REMARK 3 T13: -0.0240 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.3321 L22: 1.7219 REMARK 3 L33: 1.8698 L12: -0.7309 REMARK 3 L13: -0.0984 L23: -0.2810 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.0959 S13: -0.2009 REMARK 3 S21: -0.0663 S22: -0.0282 S23: 0.3007 REMARK 3 S31: 0.1553 S32: -0.0999 S33: -0.0439 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 514 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5113 -20.8620 17.2664 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.3010 REMARK 3 T33: 0.2448 T12: -0.0703 REMARK 3 T13: 0.0148 T23: 0.0942 REMARK 3 L TENSOR REMARK 3 L11: 1.6962 L22: 1.9990 REMARK 3 L33: 2.6825 L12: -0.0158 REMARK 3 L13: 0.9333 L23: -0.5919 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: -0.3576 S13: -0.3014 REMARK 3 S21: 0.1727 S22: 0.0471 S23: 0.0679 REMARK 3 S31: 0.0588 S32: 0.0402 S33: -0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3516 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 43.485 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: 5F4M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, PEG8000, TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.86000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.86000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 256 REMARK 465 LEU A 257 REMARK 465 VAL B 256 REMARK 465 LEU B 257 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 255 CG OD1 ND2 REMARK 470 GLN A 258 CG CD OE1 NE2 REMARK 470 ASP A 396 CG OD1 OD2 REMARK 470 ASN A 425 CG OD1 ND2 REMARK 470 ARG A 484 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 523 CG CD OE1 NE2 REMARK 470 GLN B 253 CG CD OE1 NE2 REMARK 470 ASN B 255 CG OD1 ND2 REMARK 470 GLN B 258 CG CD OE1 NE2 REMARK 470 ASP B 481 CG OD1 OD2 REMARK 470 ARG B 484 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 523 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 260 46.49 -149.71 REMARK 500 ASP A 518 -61.87 -101.01 REMARK 500 VAL A 521 -166.49 -125.00 REMARK 500 GLN B 260 45.70 -150.45 REMARK 500 ASP B 518 -62.93 -101.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 974 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 975 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 976 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 986 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 987 DISTANCE = 6.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F4M RELATED DB: PDB REMARK 900 PROTRUDING DOMAIN OF GII.17 NOROVIRUS KAWASAKI323 REMARK 900 RELATED ID: 5F4J RELATED DB: PDB REMARK 900 PROTRUDING DOMAIN OF GII.17 NOROVIRUS SAITAMA/T87 DBREF1 5F4O A 225 530 UNP A0A0E4B1P1_9CALI DBREF2 5F4O A A0A0E4B1P1 225 530 DBREF1 5F4O B 225 530 UNP A0A0E4B1P1_9CALI DBREF2 5F4O B A0A0E4B1P1 225 530 SEQADV 5F4O SER A 224 UNP A0A0E4B1P EXPRESSION TAG SEQADV 5F4O SER B 224 UNP A0A0E4B1P EXPRESSION TAG SEQRES 1 A 307 SER LYS PRO PHE SER LEU PRO ILE LEU THR LEU SER GLU SEQRES 2 A 307 LEU THR ASN SER ARG PHE PRO VAL PRO ILE ASP SER LEU SEQRES 3 A 307 PHE THR ALA GLN ASN ASN VAL LEU GLN VAL GLN CYS GLN SEQRES 4 A 307 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 A 307 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 A 307 ARG VAL THR ALA GLN ILE ASN GLN ARG ASP ARG TRP HIS SEQRES 7 A 307 MET GLN LEU GLN ASN LEU ASN GLY THR THR TYR ASP PRO SEQRES 8 A 307 THR ASP ASP VAL PRO ALA PRO LEU GLY THR PRO ASP PHE SEQRES 9 A 307 LYS GLY VAL VAL PHE GLY MET VAL SER GLN ARG ASN VAL SEQRES 10 A 307 GLY ASN ASP ALA PRO GLY SER THR ARG ALA GLN GLN ALA SEQRES 11 A 307 TRP VAL SER THR TYR SER PRO GLN PHE VAL PRO LYS LEU SEQRES 12 A 307 GLY SER VAL ASN LEU ARG ILE SER ASP ASN ASP ASP PHE SEQRES 13 A 307 GLN PHE GLN PRO THR LYS PHE THR PRO VAL GLY VAL ASN SEQRES 14 A 307 ASP ASP ASP ASP GLY HIS PRO PHE ARG GLN TRP GLU LEU SEQRES 15 A 307 PRO ASN TYR SER GLY GLU LEU THR LEU ASN MET ASN LEU SEQRES 16 A 307 ALA PRO PRO VAL ALA PRO ASN PHE PRO GLY GLU GLN LEU SEQRES 17 A 307 LEU PHE PHE ARG SER PHE VAL PRO CYS SER GLY GLY TYR SEQRES 18 A 307 ASN GLN GLY ILE ILE ASP CYS LEU ILE PRO GLN GLU TRP SEQRES 19 A 307 ILE GLN HIS PHE TYR GLN GLU SER ALA PRO SER GLN SER SEQRES 20 A 307 ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP THR GLY SEQRES 21 A 307 ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER GLY TYR SEQRES 22 A 307 ILE THR VAL ALA HIS SER GLY ASP TYR PRO LEU VAL VAL SEQRES 23 A 307 PRO ALA ASN GLY HIS PHE ARG PHE ASP SER TRP VAL ASN SEQRES 24 A 307 GLN PHE TYR SER LEU ALA PRO MET SEQRES 1 B 307 SER LYS PRO PHE SER LEU PRO ILE LEU THR LEU SER GLU SEQRES 2 B 307 LEU THR ASN SER ARG PHE PRO VAL PRO ILE ASP SER LEU SEQRES 3 B 307 PHE THR ALA GLN ASN ASN VAL LEU GLN VAL GLN CYS GLN SEQRES 4 B 307 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 B 307 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 B 307 ARG VAL THR ALA GLN ILE ASN GLN ARG ASP ARG TRP HIS SEQRES 7 B 307 MET GLN LEU GLN ASN LEU ASN GLY THR THR TYR ASP PRO SEQRES 8 B 307 THR ASP ASP VAL PRO ALA PRO LEU GLY THR PRO ASP PHE SEQRES 9 B 307 LYS GLY VAL VAL PHE GLY MET VAL SER GLN ARG ASN VAL SEQRES 10 B 307 GLY ASN ASP ALA PRO GLY SER THR ARG ALA GLN GLN ALA SEQRES 11 B 307 TRP VAL SER THR TYR SER PRO GLN PHE VAL PRO LYS LEU SEQRES 12 B 307 GLY SER VAL ASN LEU ARG ILE SER ASP ASN ASP ASP PHE SEQRES 13 B 307 GLN PHE GLN PRO THR LYS PHE THR PRO VAL GLY VAL ASN SEQRES 14 B 307 ASP ASP ASP ASP GLY HIS PRO PHE ARG GLN TRP GLU LEU SEQRES 15 B 307 PRO ASN TYR SER GLY GLU LEU THR LEU ASN MET ASN LEU SEQRES 16 B 307 ALA PRO PRO VAL ALA PRO ASN PHE PRO GLY GLU GLN LEU SEQRES 17 B 307 LEU PHE PHE ARG SER PHE VAL PRO CYS SER GLY GLY TYR SEQRES 18 B 307 ASN GLN GLY ILE ILE ASP CYS LEU ILE PRO GLN GLU TRP SEQRES 19 B 307 ILE GLN HIS PHE TYR GLN GLU SER ALA PRO SER GLN SER SEQRES 20 B 307 ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP THR GLY SEQRES 21 B 307 ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER GLY TYR SEQRES 22 B 307 ILE THR VAL ALA HIS SER GLY ASP TYR PRO LEU VAL VAL SEQRES 23 B 307 PRO ALA ASN GLY HIS PHE ARG PHE ASP SER TRP VAL ASN SEQRES 24 B 307 GLN PHE TYR SER LEU ALA PRO MET HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET MG A 606 1 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET MG B 605 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 9(C2 H6 O2) FORMUL 8 MG 2(MG 2+) FORMUL 14 HOH *563(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 PRO A 454 SER A 465 1 12 HELIX 4 AA4 THR B 233 LEU B 237 5 5 HELIX 5 AA5 LEU B 279 ILE B 283 5 5 HELIX 6 AA6 PRO B 454 SER B 465 1 12 SHEET 1 AA1 4 ILE A 448 CYS A 451 0 SHEET 2 AA1 4 GLU A 429 PHE A 437 -1 N PHE A 434 O CYS A 451 SHEET 3 AA1 4 SER A 248 THR A 251 -1 N PHE A 250 O PHE A 433 SHEET 4 AA1 4 TYR A 505 PRO A 506 -1 O TYR A 505 N THR A 251 SHEET 1 AA2 6 ILE A 448 CYS A 451 0 SHEET 2 AA2 6 GLU A 429 PHE A 437 -1 N PHE A 434 O CYS A 451 SHEET 3 AA2 6 TYR A 496 ALA A 500 -1 O VAL A 499 N GLN A 430 SHEET 4 AA2 6 THR A 485 HIS A 492 -1 N HIS A 492 O TYR A 496 SHEET 5 AA2 6 VAL A 472 VAL A 478 -1 N ALA A 473 O LEU A 491 SHEET 6 AA2 6 HIS A 514 VAL A 521 -1 O SER A 519 N LEU A 474 SHEET 1 AA3 7 PHE A 286 GLN A 293 0 SHEET 2 AA3 7 TRP A 300 GLN A 305 -1 O GLN A 305 N ARG A 287 SHEET 3 AA3 7 SER A 368 ILE A 373 -1 O VAL A 369 N MET A 302 SHEET 4 AA3 7 THR A 348 SER A 356 -1 N TRP A 354 O ARG A 372 SHEET 5 AA3 7 VAL A 330 ARG A 338 -1 N VAL A 331 O VAL A 355 SHEET 6 AA3 7 PRO A 383 ASN A 392 -1 O VAL A 389 N PHE A 332 SHEET 7 AA3 7 PHE A 286 GLN A 293 -1 N PHE A 286 O PHE A 386 SHEET 1 AA4 4 ILE B 448 CYS B 451 0 SHEET 2 AA4 4 GLU B 429 PHE B 437 -1 N PHE B 434 O CYS B 451 SHEET 3 AA4 4 SER B 248 THR B 251 -1 N PHE B 250 O PHE B 433 SHEET 4 AA4 4 TYR B 505 PRO B 506 -1 O TYR B 505 N THR B 251 SHEET 1 AA5 6 ILE B 448 CYS B 451 0 SHEET 2 AA5 6 GLU B 429 PHE B 437 -1 N PHE B 434 O CYS B 451 SHEET 3 AA5 6 TYR B 496 ALA B 500 -1 O VAL B 499 N GLN B 430 SHEET 4 AA5 6 ARG B 484 HIS B 492 -1 N HIS B 492 O TYR B 496 SHEET 5 AA5 6 VAL B 472 ASN B 479 -1 N TYR B 477 O LEU B 486 SHEET 6 AA5 6 HIS B 514 VAL B 521 -1 O SER B 519 N LEU B 474 SHEET 1 AA6 7 PHE B 286 GLN B 293 0 SHEET 2 AA6 7 TRP B 300 GLN B 305 -1 O GLN B 305 N ARG B 287 SHEET 3 AA6 7 SER B 368 ILE B 373 -1 O VAL B 369 N MET B 302 SHEET 4 AA6 7 THR B 348 SER B 356 -1 N TRP B 354 O ARG B 372 SHEET 5 AA6 7 VAL B 330 ARG B 338 -1 N VAL B 331 O VAL B 355 SHEET 6 AA6 7 PRO B 383 ASN B 392 -1 O VAL B 389 N PHE B 332 SHEET 7 AA6 7 PHE B 286 GLN B 293 -1 N GLY B 288 O THR B 384 LINK MG MG B 605 O HOH B 757 1555 1555 2.99 SITE 1 AC1 5 GLU A 456 HIS A 460 HOH A 729 HOH A 834 SITE 2 AC1 5 HOH A 871 SITE 1 AC2 5 GLN A 402 TRP A 403 HOH A 702 HOH A 790 SITE 2 AC2 5 HOH A 952 SITE 1 AC3 7 GLN A 277 ASN A 306 LEU A 307 ASN A 308 SITE 2 AC3 7 HOH A 755 HOH A 769 HOH A 789 SITE 1 AC4 6 LEU A 272 GLN A 273 GLY A 274 THR A 276 SITE 2 AC4 6 LEU A 322 HOH A 734 SITE 1 AC5 4 PHE A 379 GLN A 380 HOH A 709 HOH A 892 SITE 1 AC6 3 LEU A 229 ARG A 516 PHE A 517 SITE 1 AC7 6 HOH A 729 PRO B 230 GLU B 456 HIS B 460 SITE 2 AC7 6 HOH B 850 HOH B 852 SITE 1 AC8 4 PHE B 379 GLN B 380 HOH B 719 HOH B 807 SITE 1 AC9 5 LEU B 272 GLN B 273 GLY B 274 THR B 276 SITE 2 AC9 5 LEU B 322 SITE 1 AD1 7 GLN B 277 ASN B 306 LEU B 307 ASN B 308 SITE 2 AD1 7 HOH B 720 HOH B 730 HOH B 803 SITE 1 AD2 4 LEU B 229 ARG B 516 PHE B 517 HOH B 757 CRYST1 75.720 86.970 97.350 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010272 0.00000