HEADER DE NOVO PROTEIN 04-DEC-15 5F53 TITLE NANO-RING OF CADMIUM IONS COORDINATED BY NVPIZZA2-S16S58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NVPIZZA2-S16S58; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS COMPUTATIONAL PROTEIN DESIGN, METAL COORDINATION COMPLEX, SELF- KEYWDS 2 ASSEMBLY, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.D.VOET,J.R.H.TAME REVDAT 3 20-MAR-24 5F53 1 LINK REVDAT 2 19-FEB-20 5F53 1 REMARK REVDAT 1 14-DEC-16 5F53 0 JRNL AUTH A.R.D.VOET,D.TERADA,H.NOGUCHI,C.ADDY,S.UNZAI,S.AKASHI, JRNL AUTH 2 K.Y.J.ZHANG,J.R.H.TAME JRNL TITL A CADMIUM CHLORIDE RING CREATED BY A DESIGNED SYMMETRICAL JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.D.VOET,H.NOGUCHI,C.ADDY,K.Y.J.ZHANG,J.R.H.TAME REMARK 1 TITL BIOMINERALIZATION OF A CADMIUM CHLORIDE NANOCRYSTAL BY A REMARK 1 TITL 2 DESIGNED SYMMETRICAL PROTEIN. REMARK 1 REF ANGEW. CHEM. INT. ED. ENGL. V. 54 9857 2015 REMARK 1 REFN ESSN 1521-3773 REMARK 1 PMID 26136355 REMARK 1 DOI 10.1002/ANIE.201503575 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.R.D.VOET,H.NOGUCHI,C.ADDY,D.SIMONCINI,D.TERADA,S.UNZAI, REMARK 1 AUTH 2 S.Y.PARK,K.Y.J.ZHANG,J.R.H.TAME REMARK 1 TITL COMPUTATIONAL DESIGN OF A SELF-ASSEMBLING SYMMETRICAL REMARK 1 TITL 2 BETA-PROPELLER PROTEIN. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 15102 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 25288768 REMARK 1 DOI 10.1073/PNAS.1412768111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 738 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.574 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 606 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 572 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 829 ; 2.107 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1305 ; 1.131 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 83 ; 6.891 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ;30.282 ;25.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 83 ;14.602 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;19.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 106 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 716 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 134 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 335 ; 3.264 ; 2.712 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 334 ; 3.254 ; 2.709 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 417 ; 4.839 ; 4.058 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 418 ; 4.841 ; 4.060 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 270 ; 4.028 ; 2.863 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 268 ; 3.973 ; 2.870 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 410 ; 5.857 ; 4.205 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 654 ; 7.487 ;21.817 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 647 ; 7.471 ;21.735 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5F53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000214233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10953 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 27.20 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M MAGNESIUM CHLORIDE, 90 MM REMARK 280 HEPES, 27% PEG 400, 10% GLYCEROL, 30 MM CADMIUM CHLORIDE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 55.16000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 55.16000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 55.16000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 55.16000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 82.74000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 27.58000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 82.74000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 82.74000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 27.58000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 82.74000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 27.58000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 27.58000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 27.58000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 27.58000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 82.74000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 27.58000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 82.74000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 82.74000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 27.58000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 82.74000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 82.74000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 27.58000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 27.58000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 27.58000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 27.58000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 82.74000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 82.74000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 82.74000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 55.16000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 55.16000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 55.16000 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 55.16000 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 55.16000 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 55.16000 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 55.16000 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 27.58000 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 82.74000 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 27.58000 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 27.58000 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 82.74000 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 27.58000 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 82.74000 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 82.74000 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 82.74000 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 82.74000 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 27.58000 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 82.74000 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 27.58000 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 27.58000 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 82.74000 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 27.58000 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 27.58000 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 82.74000 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 82.74000 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 82.74000 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 82.74000 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 27.58000 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 82.74000 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 27.58000 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 27.58000 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 27.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 102 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 55 OD1 ASN A 55 24444 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 50 45.36 -80.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 31 NE2 REMARK 620 2 HIS A 73 NE2 80.0 REMARK 620 3 HOH A 242 O 156.7 87.5 REMARK 620 4 HOH A 244 O 88.8 62.2 68.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZCN RELATED DB: PDB REMARK 900 THE METAL-FREE STRUCTURE OF THE SAME PROTEIN DBREF 5F53 A 5 91 PDB 5F53 5F53 5 91 SEQRES 1 A 87 GLY SER HIS MET PHE THR GLY LEU ASN THR PRO SER GLY SEQRES 2 A 87 VAL ALA VAL ASP SER ALA GLY THR VAL TYR VAL THR ASP SEQRES 3 A 87 HIS GLY ASN ASN ARG VAL VAL LYS LEU ALA ALA GLY SER SEQRES 4 A 87 ASN THR GLN THR VAL LEU PRO PHE THR GLY LEU ASN THR SEQRES 5 A 87 PRO SER GLY VAL ALA VAL ASP SER ALA GLY THR VAL TYR SEQRES 6 A 87 VAL THR ASP HIS GLY ASN ASN ARG VAL VAL LYS LEU ALA SEQRES 7 A 87 ALA GLY SER ASN THR GLN THR VAL LEU HET CD A 101 1 HET CL A 102 1 HET CL A 103 1 HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CD CD 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *50(H2 O) HELIX 1 AA1 HIS A 31 ASN A 34 5 4 HELIX 2 AA2 HIS A 73 ASN A 76 5 4 SHEET 1 AA1 4 VAL A 18 VAL A 20 0 SHEET 2 AA1 4 VAL A 26 ASP A 30 -1 O TYR A 27 N ALA A 19 SHEET 3 AA1 4 ARG A 35 LEU A 39 -1 O VAL A 37 N VAL A 28 SHEET 4 AA1 4 THR A 47 VAL A 48 -1 O THR A 47 N LYS A 38 SHEET 1 AA2 4 ALA A 61 VAL A 62 0 SHEET 2 AA2 4 VAL A 68 ASP A 72 -1 O TYR A 69 N ALA A 61 SHEET 3 AA2 4 ARG A 77 LEU A 81 -1 O VAL A 79 N VAL A 70 SHEET 4 AA2 4 THR A 89 VAL A 90 -1 O THR A 89 N LYS A 80 LINK NE2 HIS A 31 CD CD A 101 1555 1555 2.35 LINK NE2 HIS A 73 CD CD A 101 1555 24444 2.33 LINK CD CD A 101 O HOH A 242 1555 24444 2.45 LINK CD CD A 101 O HOH A 244 1555 1555 2.35 SITE 1 AC1 6 HIS A 31 HIS A 73 CL A 102 CL A 103 SITE 2 AC1 6 HOH A 242 HOH A 244 SITE 1 AC2 3 HIS A 31 HIS A 73 CD A 101 SITE 1 AC3 3 HIS A 31 HIS A 73 CD A 101 CRYST1 110.320 110.320 110.320 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009065 0.00000