HEADER CHAPERONE 04-DEC-15 5F5R TITLE TRAP1N-ADPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 60-294; COMPND 5 SYNONYM: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE COMPND 6 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAP1, HSP75; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS CHAPERONE, ATPASE, GHKL ATPASE EXPDTA X-RAY DIFFRACTION AUTHOR F.T.F.TSAI,S.LEE,N.SUNG,J.LEE,C.CHANG,A.JOACHIMIAK REVDAT 6 27-SEP-23 5F5R 1 LINK REVDAT 5 25-DEC-19 5F5R 1 REMARK REVDAT 4 13-SEP-17 5F5R 1 JRNL REMARK REVDAT 3 22-JUN-16 5F5R 1 JRNL REVDAT 2 23-MAR-16 5F5R 1 JRNL REVDAT 1 02-MAR-16 5F5R 0 JRNL AUTH N.SUNG,J.LEE,J.H.KIM,C.CHANG,A.JOACHIMIAK,S.LEE,F.T.TSAI JRNL TITL MITOCHONDRIAL HSP90 IS A LIGAND-ACTIVATED MOLECULAR JRNL TITL 2 CHAPERONE COUPLING ATP BINDING TO DIMER CLOSURE THROUGH A JRNL TITL 3 COILED-COIL INTERMEDIATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 2952 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26929380 JRNL DOI 10.1073/PNAS.1516167113 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 54569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2899 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3443 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 508 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3560 ; 0.003 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4807 ; 0.656 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 8.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.477 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;14.973 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2592 ; 0.023 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2207 ; 2.072 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3542 ; 3.337 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1353 ; 5.051 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1265 ; 7.861 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): -36.6152 55.7017 67.8599 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.1251 REMARK 3 T33: 0.1102 T12: 0.0337 REMARK 3 T13: 0.1128 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.1525 L22: 2.8090 REMARK 3 L33: 1.2776 L12: 0.9578 REMARK 3 L13: 0.3595 L23: -0.2533 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.1854 S13: 0.0670 REMARK 3 S21: -0.3726 S22: -0.0751 S23: -0.2397 REMARK 3 S31: 0.0127 S32: 0.2067 S33: 0.0785 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): -52.4450 15.6452 64.9082 REMARK 3 T TENSOR REMARK 3 T11: 0.0470 T22: 0.0929 REMARK 3 T33: 0.0662 T12: -0.0059 REMARK 3 T13: -0.0400 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 1.0254 L22: 1.7167 REMARK 3 L33: 1.3488 L12: 0.4577 REMARK 3 L13: -0.1028 L23: 0.3757 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.1935 S13: -0.1230 REMARK 3 S21: -0.2101 S22: 0.0336 S23: 0.0759 REMARK 3 S31: -0.0380 S32: -0.1251 S33: 0.0092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5F5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2CG9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 5.6, 22% REMARK 280 PEG4000, 5% ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.50550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.50550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.28500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.58400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.28500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.58400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.50550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.28500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.58400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.50550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.28500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.58400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 590 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 521 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 589 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 652 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 57 REMARK 465 GLY A 58 REMARK 465 HIS A 59 REMARK 465 SER A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 GLU A 69 REMARK 465 ALA B 57 REMARK 465 GLY B 58 REMARK 465 HIS B 59 REMARK 465 SER B 60 REMARK 465 THR B 61 REMARK 465 GLN B 62 REMARK 465 THR B 63 REMARK 465 ALA B 64 REMARK 465 GLU B 65 REMARK 465 ASP B 66 REMARK 465 LYS B 67 REMARK 465 GLU B 68 REMARK 465 GLU B 69 REMARK 465 ASP B 134 REMARK 465 GLY B 135 REMARK 465 GLN B 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 442 O HOH A 452 1.93 REMARK 500 O HOH B 609 O HOH B 615 1.93 REMARK 500 O PHE A 90 NZ LYS A 95 1.93 REMARK 500 OE1 GLN A 200 O HOH A 401 2.06 REMARK 500 O HOH B 522 O HOH B 654 2.07 REMARK 500 O HOH B 639 O HOH B 674 2.07 REMARK 500 O HOH B 403 O HOH B 590 2.08 REMARK 500 O HOH A 430 O HOH A 595 2.16 REMARK 500 O ASN B 189 O HOH B 401 2.16 REMARK 500 O HOH A 460 O HOH A 508 2.16 REMARK 500 O HOH B 438 O HOH B 573 2.17 REMARK 500 OE2 GLU A 267 O HOH A 402 2.19 REMARK 500 O HOH B 579 O HOH B 587 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 644 O HOH B 644 3456 1.64 REMARK 500 O HOH A 440 O HOH B 401 5555 2.01 REMARK 500 O HOH A 599 O HOH A 599 3456 2.03 REMARK 500 O HOH A 568 O HOH B 679 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 108 56.71 -91.55 REMARK 500 ILE A 175 53.79 -114.79 REMARK 500 ASN A 189 45.20 -101.99 REMARK 500 GLU B 108 55.29 -91.52 REMARK 500 ILE B 175 73.31 -107.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 135 GLN A 136 -147.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 177 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 119 OD1 REMARK 620 2 ANP A 300 O1G 172.4 REMARK 620 3 ANP A 300 O1B 91.4 88.5 REMARK 620 4 ANP A 300 O2A 87.1 100.5 87.1 REMARK 620 5 HOH A 443 O 86.6 94.1 175.4 88.7 REMARK 620 6 HOH A 458 O 81.6 90.8 92.4 168.7 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 119 OD1 REMARK 620 2 ANP B 300 O1G 173.7 REMARK 620 3 ANP B 300 O1B 92.9 85.9 REMARK 620 4 ANP B 300 O2A 88.7 97.4 86.8 REMARK 620 5 HOH B 469 O 82.9 90.9 93.1 171.6 REMARK 620 6 HOH B 513 O 87.2 94.4 176.0 89.2 90.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F3K RELATED DB: PDB REMARK 900 5F3K CONTAINS THE SAME PROTEIN WITHOUT LIGAND BINDING DBREF 5F5R A 60 294 UNP Q12931 TRAP1_HUMAN 60 294 DBREF 5F5R B 60 294 UNP Q12931 TRAP1_HUMAN 60 294 SEQADV 5F5R ALA A 57 UNP Q12931 EXPRESSION TAG SEQADV 5F5R GLY A 58 UNP Q12931 EXPRESSION TAG SEQADV 5F5R HIS A 59 UNP Q12931 EXPRESSION TAG SEQADV 5F5R ALA B 57 UNP Q12931 EXPRESSION TAG SEQADV 5F5R GLY B 58 UNP Q12931 EXPRESSION TAG SEQADV 5F5R HIS B 59 UNP Q12931 EXPRESSION TAG SEQRES 1 A 238 ALA GLY HIS SER THR GLN THR ALA GLU ASP LYS GLU GLU SEQRES 2 A 238 PRO LEU HIS SER ILE ILE SER SER THR GLU SER VAL GLN SEQRES 3 A 238 GLY SER THR SER LYS HIS GLU PHE GLN ALA GLU THR LYS SEQRES 4 A 238 LYS LEU LEU ASP ILE VAL ALA ARG SER LEU TYR SER GLU SEQRES 5 A 238 LYS GLU VAL PHE ILE ARG GLU LEU ILE SER ASN ALA SER SEQRES 6 A 238 ASP ALA LEU GLU LYS LEU ARG HIS LYS LEU VAL SER ASP SEQRES 7 A 238 GLY GLN ALA LEU PRO GLU MET GLU ILE HIS LEU GLN THR SEQRES 8 A 238 ASN ALA GLU LYS GLY THR ILE THR ILE GLN ASP THR GLY SEQRES 9 A 238 ILE GLY MET THR GLN GLU GLU LEU VAL SER ASN LEU GLY SEQRES 10 A 238 THR ILE ALA ARG SER GLY SER LYS ALA PHE LEU ASP ALA SEQRES 11 A 238 LEU GLN ASN GLN ALA GLU ALA SER SER LYS ILE ILE GLY SEQRES 12 A 238 GLN PHE GLY VAL GLY PHE TYR SER ALA PHE MET VAL ALA SEQRES 13 A 238 ASP ARG VAL GLU VAL TYR SER ARG SER ALA ALA PRO GLY SEQRES 14 A 238 SER LEU GLY TYR GLN TRP LEU SER ASP GLY SER GLY VAL SEQRES 15 A 238 PHE GLU ILE ALA GLU ALA SER GLY VAL ARG THR GLY THR SEQRES 16 A 238 LYS ILE ILE ILE HIS LEU LYS SER ASP CYS LYS GLU PHE SEQRES 17 A 238 SER SER GLU ALA ARG VAL ARG ASP VAL VAL THR LYS TYR SEQRES 18 A 238 SER ASN PHE VAL SER PHE PRO LEU TYR LEU ASN GLY ARG SEQRES 19 A 238 ARG MET ASN THR SEQRES 1 B 238 ALA GLY HIS SER THR GLN THR ALA GLU ASP LYS GLU GLU SEQRES 2 B 238 PRO LEU HIS SER ILE ILE SER SER THR GLU SER VAL GLN SEQRES 3 B 238 GLY SER THR SER LYS HIS GLU PHE GLN ALA GLU THR LYS SEQRES 4 B 238 LYS LEU LEU ASP ILE VAL ALA ARG SER LEU TYR SER GLU SEQRES 5 B 238 LYS GLU VAL PHE ILE ARG GLU LEU ILE SER ASN ALA SER SEQRES 6 B 238 ASP ALA LEU GLU LYS LEU ARG HIS LYS LEU VAL SER ASP SEQRES 7 B 238 GLY GLN ALA LEU PRO GLU MET GLU ILE HIS LEU GLN THR SEQRES 8 B 238 ASN ALA GLU LYS GLY THR ILE THR ILE GLN ASP THR GLY SEQRES 9 B 238 ILE GLY MET THR GLN GLU GLU LEU VAL SER ASN LEU GLY SEQRES 10 B 238 THR ILE ALA ARG SER GLY SER LYS ALA PHE LEU ASP ALA SEQRES 11 B 238 LEU GLN ASN GLN ALA GLU ALA SER SER LYS ILE ILE GLY SEQRES 12 B 238 GLN PHE GLY VAL GLY PHE TYR SER ALA PHE MET VAL ALA SEQRES 13 B 238 ASP ARG VAL GLU VAL TYR SER ARG SER ALA ALA PRO GLY SEQRES 14 B 238 SER LEU GLY TYR GLN TRP LEU SER ASP GLY SER GLY VAL SEQRES 15 B 238 PHE GLU ILE ALA GLU ALA SER GLY VAL ARG THR GLY THR SEQRES 16 B 238 LYS ILE ILE ILE HIS LEU LYS SER ASP CYS LYS GLU PHE SEQRES 17 B 238 SER SER GLU ALA ARG VAL ARG ASP VAL VAL THR LYS TYR SEQRES 18 B 238 SER ASN PHE VAL SER PHE PRO LEU TYR LEU ASN GLY ARG SEQRES 19 B 238 ARG MET ASN THR HET ANP A 300 31 HET MG A 301 1 HET ANP B 300 31 HET MG B 301 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *508(H2 O) HELIX 1 AA1 GLN A 91 SER A 104 1 14 HELIX 2 AA2 GLU A 110 HIS A 129 1 20 HELIX 3 AA3 THR A 164 LEU A 172 1 9 HELIX 4 AA4 ARG A 177 ASN A 189 1 13 HELIX 5 AA5 ALA A 193 GLY A 202 1 10 HELIX 6 AA6 VAL A 203 MET A 210 5 8 HELIX 7 AA7 SER A 259 SER A 265 5 7 HELIX 8 AA8 SER A 266 THR A 275 1 10 HELIX 9 AA9 LYS A 276 VAL A 281 5 6 HELIX 10 AB1 GLN B 91 SER B 104 1 14 HELIX 11 AB2 GLU B 110 HIS B 129 1 20 HELIX 12 AB3 THR B 164 LEU B 172 1 9 HELIX 13 AB4 ARG B 177 GLN B 190 1 14 HELIX 14 AB5 ALA B 193 GLY B 202 1 10 HELIX 15 AB6 VAL B 203 MET B 210 5 8 HELIX 16 AB7 SER B 259 SER B 265 5 7 HELIX 17 AB8 SER B 266 THR B 275 1 10 HELIX 18 AB9 LYS B 276 VAL B 281 5 6 SHEET 1 AA1 9 SER A 80 GLU A 89 0 SHEET 2 AA1 9 VAL A 238 SER A 245 -1 O SER A 245 N SER A 80 SHEET 3 AA1 9 GLY A 228 SER A 233 -1 N GLN A 230 O ALA A 242 SHEET 4 AA1 9 ALA A 212 ARG A 220 -1 N VAL A 217 O TRP A 231 SHEET 5 AA1 9 GLY A 250 LEU A 257 -1 O ILE A 254 N GLU A 216 SHEET 6 AA1 9 THR A 153 ASP A 158 -1 N ILE A 156 O ILE A 253 SHEET 7 AA1 9 ILE A 143 ASN A 148 -1 N HIS A 144 O GLN A 157 SHEET 8 AA1 9 LEU A 285 LEU A 287 1 O TYR A 286 N ILE A 143 SHEET 9 AA1 9 ARG A 290 ARG A 291 -1 O ARG A 290 N LEU A 287 SHEET 1 AA2 9 SER B 80 GLU B 89 0 SHEET 2 AA2 9 VAL B 238 SER B 245 -1 O ILE B 241 N SER B 86 SHEET 3 AA2 9 GLY B 228 SER B 233 -1 N GLN B 230 O ALA B 242 SHEET 4 AA2 9 ALA B 212 ARG B 220 -1 N VAL B 217 O TRP B 231 SHEET 5 AA2 9 GLY B 250 LEU B 257 -1 O ILE B 254 N GLU B 216 SHEET 6 AA2 9 THR B 153 ASP B 158 -1 N ILE B 156 O ILE B 253 SHEET 7 AA2 9 ILE B 143 ASN B 148 -1 N HIS B 144 O GLN B 157 SHEET 8 AA2 9 LEU B 285 LEU B 287 1 O TYR B 286 N LEU B 145 SHEET 9 AA2 9 ARG B 290 ARG B 291 -1 O ARG B 290 N LEU B 287 LINK OD1 ASN A 119 MG MG A 301 1555 1555 2.01 LINK O1G ANP A 300 MG MG A 301 1555 1555 2.02 LINK O1B ANP A 300 MG MG A 301 1555 1555 2.06 LINK O2A ANP A 300 MG MG A 301 1555 1555 2.01 LINK MG MG A 301 O HOH A 443 1555 1555 2.16 LINK MG MG A 301 O HOH A 458 1555 1555 2.15 LINK OD1 ASN B 119 MG MG B 301 1555 1555 1.98 LINK O1G ANP B 300 MG MG B 301 1555 1555 2.03 LINK O1B ANP B 300 MG MG B 301 1555 1555 2.04 LINK O2A ANP B 300 MG MG B 301 1555 1555 2.02 LINK MG MG B 301 O HOH B 469 1555 1555 2.08 LINK MG MG B 301 O HOH B 513 1555 1555 2.12 SITE 1 AC1 29 ASN A 119 ALA A 123 LYS A 126 ASP A 158 SITE 2 AC1 29 MET A 163 ASN A 171 ARG A 177 GLY A 204 SITE 3 AC1 29 PHE A 205 THR A 251 MG A 301 HOH A 422 SITE 4 AC1 29 HOH A 424 HOH A 429 HOH A 430 HOH A 431 SITE 5 AC1 29 HOH A 433 HOH A 442 HOH A 443 HOH A 447 SITE 6 AC1 29 HOH A 455 HOH A 458 HOH A 468 HOH A 471 SITE 7 AC1 29 HOH A 474 HOH A 478 HOH A 492 HOH A 498 SITE 8 AC1 29 HOH A 523 SITE 1 AC2 4 ASN A 119 ANP A 300 HOH A 443 HOH A 458 SITE 1 AC3 28 ASN B 119 ALA B 123 LYS B 126 ASP B 158 SITE 2 AC3 28 MET B 163 ASN B 171 ARG B 177 GLY B 204 SITE 3 AC3 28 PHE B 205 THR B 251 MG B 301 HOH B 427 SITE 4 AC3 28 HOH B 431 HOH B 440 HOH B 442 HOH B 444 SITE 5 AC3 28 HOH B 449 HOH B 453 HOH B 462 HOH B 469 SITE 6 AC3 28 HOH B 483 HOH B 485 HOH B 496 HOH B 513 SITE 7 AC3 28 HOH B 522 HOH B 533 HOH B 552 HOH B 554 SITE 1 AC4 4 ASN B 119 ANP B 300 HOH B 469 HOH B 513 CRYST1 92.570 143.168 103.011 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009708 0.00000