HEADER IMMUNE SYSTEM 08-DEC-15 5F7E TITLE CRYSTAL STRUCTURE OF GERM-LINE PRECURSOR OF 3BNC60 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: 3BNC60 GERMLINE HEAVY CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ANTIBODY, IMMUNE SYSTEM, HIV-1 EXPDTA X-RAY DIFFRACTION AUTHOR S.A.SIEVERS,L.SCHARF,S.JIANG,P.J.BJORKMAN REVDAT 6 23-OCT-24 5F7E 1 REMARK REVDAT 5 27-SEP-23 5F7E 1 REMARK REVDAT 4 11-DEC-19 5F7E 1 REMARK REVDAT 3 13-SEP-17 5F7E 1 REMARK REVDAT 2 13-APR-16 5F7E 1 JRNL REVDAT 1 06-APR-16 5F7E 0 JRNL AUTH L.SCHARF,A.P.WEST,S.A.SIEVERS,C.CHEN,S.JIANG,H.GAO,M.D.GRAY, JRNL AUTH 2 A.T.MCGUIRE,J.F.SCHEID,M.C.NUSSENZWEIG,L.STAMATATOS, JRNL AUTH 3 P.J.BJORKMAN JRNL TITL STRUCTURAL BASIS FOR GERMLINE ANTIBODY RECOGNITION OF HIV-1 JRNL TITL 2 IMMUNOGENS. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 26997349 JRNL DOI 10.7554/ELIFE.13783 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10PRE_2135 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 35588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4357 - 4.2240 0.90 3129 139 0.1817 0.1880 REMARK 3 2 4.2240 - 3.3534 0.92 3055 137 0.1681 0.1672 REMARK 3 3 3.3534 - 2.9297 0.91 2962 132 0.1816 0.1972 REMARK 3 4 2.9297 - 2.6619 0.92 2976 129 0.1982 0.2476 REMARK 3 5 2.6619 - 2.4712 0.95 3104 141 0.2136 0.2186 REMARK 3 6 2.4712 - 2.3255 0.97 3099 139 0.2191 0.2547 REMARK 3 7 2.3255 - 2.2091 0.97 3136 141 0.2182 0.2342 REMARK 3 8 2.2091 - 2.1129 0.98 3154 134 0.2235 0.2245 REMARK 3 9 2.1129 - 2.0316 0.98 3125 141 0.2433 0.3045 REMARK 3 10 2.0316 - 1.9615 0.98 3167 140 0.2618 0.2887 REMARK 3 11 1.9615 - 1.9001 0.98 3172 136 0.2813 0.3149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3302 REMARK 3 ANGLE : 1.363 4505 REMARK 3 CHIRALITY : 0.082 508 REMARK 3 PLANARITY : 0.006 578 REMARK 3 DIHEDRAL : 14.912 1170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6117 -17.6009 20.6709 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.1933 REMARK 3 T33: 0.1712 T12: -0.0120 REMARK 3 T13: 0.0010 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.8092 L22: 1.7342 REMARK 3 L33: 0.7803 L12: 0.3438 REMARK 3 L13: 0.2580 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0272 S13: -0.0230 REMARK 3 S21: 0.0230 S22: -0.0059 S23: -0.0436 REMARK 3 S31: -0.0736 S32: -0.0495 S33: 0.0421 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 92 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9577 -5.5453 4.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.1722 REMARK 3 T33: 0.1497 T12: 0.0082 REMARK 3 T13: 0.0031 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.1785 L22: 0.7998 REMARK 3 L33: 0.6222 L12: -0.0605 REMARK 3 L13: 0.1180 L23: -0.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.0403 S13: -0.0239 REMARK 3 S21: -0.0241 S22: 0.0130 S23: -0.0699 REMARK 3 S31: -0.0224 S32: -0.0768 S33: 0.0058 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 152 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4287 7.3280 -3.9396 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.2910 REMARK 3 T33: 0.2111 T12: -0.0173 REMARK 3 T13: -0.0171 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.6094 L22: 0.5964 REMARK 3 L33: 2.4605 L12: -0.3217 REMARK 3 L13: 0.8279 L23: -0.0793 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.1153 S13: 0.0367 REMARK 3 S21: -0.0433 S22: 0.0965 S23: 0.0685 REMARK 3 S31: -0.0240 S32: -0.5552 S33: -0.0552 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9579 -23.6428 -4.1990 REMARK 3 T TENSOR REMARK 3 T11: 0.3166 T22: 0.3029 REMARK 3 T33: 0.2856 T12: 0.0164 REMARK 3 T13: 0.0557 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.1127 L22: 0.6951 REMARK 3 L33: 2.3659 L12: -0.0366 REMARK 3 L13: 0.5735 L23: 0.4607 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.0306 S13: -0.0204 REMARK 3 S21: -0.0320 S22: -0.0361 S23: -0.0075 REMARK 3 S31: 0.4081 S32: 0.3962 S33: 0.1816 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2501 -30.1779 5.7609 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.2006 REMARK 3 T33: 0.2101 T12: 0.0005 REMARK 3 T13: 0.0154 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.7616 L22: 2.6969 REMARK 3 L33: 4.0412 L12: -1.2364 REMARK 3 L13: 1.6192 L23: -3.2794 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.0437 S13: 0.0572 REMARK 3 S21: -0.1007 S22: -0.0815 S23: -0.1249 REMARK 3 S31: 0.0352 S32: 0.2600 S33: 0.0840 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 39 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8733 -30.3797 0.1381 REMARK 3 T TENSOR REMARK 3 T11: 0.2516 T22: 0.2023 REMARK 3 T33: 0.1983 T12: 0.0087 REMARK 3 T13: 0.0179 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.7568 L22: 1.6116 REMARK 3 L33: 1.7633 L12: 0.6563 REMARK 3 L13: -0.2199 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: 0.0649 S13: -0.0647 REMARK 3 S21: -0.0546 S22: -0.0055 S23: 0.1068 REMARK 3 S31: 0.2912 S32: -0.0206 S33: -0.0632 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5227 -20.6047 -3.4589 REMARK 3 T TENSOR REMARK 3 T11: 0.2345 T22: 0.2134 REMARK 3 T33: 0.2221 T12: 0.0192 REMARK 3 T13: 0.0043 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.3456 L22: 1.1127 REMARK 3 L33: 0.9325 L12: 0.3767 REMARK 3 L13: -0.5102 L23: -0.0947 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.0212 S13: -0.0420 REMARK 3 S21: -0.2411 S22: 0.0287 S23: -0.0382 REMARK 3 S31: 0.2934 S32: 0.0012 S33: 0.0462 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 110 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2896 7.3541 -7.4557 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.2163 REMARK 3 T33: 0.2563 T12: -0.0262 REMARK 3 T13: 0.0035 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.5796 L22: 1.8513 REMARK 3 L33: 2.0907 L12: -1.3287 REMARK 3 L13: -0.3918 L23: 0.5144 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0062 S13: 0.2907 REMARK 3 S21: 0.0193 S22: 0.0465 S23: -0.3596 REMARK 3 S31: -0.2289 S32: 0.1702 S33: -0.0556 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37312 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 36.327 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : 0.80300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 9.1, 10% PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.42850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.55650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.42850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.55650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.42850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.42850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 ASP L 1 REMARK 465 GLU L 209 REMARK 465 CYS L 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 GLN H 61 CG CD OE1 NE2 REMARK 470 ARG H 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 129 CG CD CE NZ REMARK 470 LYS H 201 CG CD CE NZ REMARK 470 LYS H 206 CG CD CE NZ REMARK 470 ILE L 2 CG1 CG2 CD1 REMARK 470 GLN L 3 CG CD OE1 NE2 REMARK 470 GLN L 24 CG CD OE1 NE2 REMARK 470 LYS L 99 CG CD CE NZ REMARK 470 LYS L 122 CG CD CE NZ REMARK 470 ASN L 148 CG OD1 ND2 REMARK 470 LYS L 165 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 423 O HOH H 444 1.82 REMARK 500 O HOH L 353 O HOH L 382 1.84 REMARK 500 O HOH H 363 O HOH H 431 1.86 REMARK 500 O HOH H 383 O HOH H 446 1.87 REMARK 500 O HOH H 432 O HOH H 463 1.89 REMARK 500 O HOH H 400 O HOH H 457 1.93 REMARK 500 O HOH H 339 O HOH H 446 1.93 REMARK 500 O HOH H 407 O HOH H 433 2.00 REMARK 500 O HOH H 408 O HOH H 454 2.02 REMARK 500 O HOH H 376 O HOH H 447 2.08 REMARK 500 O HOH H 392 O HOH H 448 2.08 REMARK 500 O HOH H 303 O HOH H 413 2.09 REMARK 500 O HOH L 314 O HOH L 408 2.09 REMARK 500 O HOH H 466 O HOH H 470 2.10 REMARK 500 O HOH H 448 O HOH H 455 2.13 REMARK 500 O HOH H 349 O HOH H 425 2.13 REMARK 500 O HOH H 313 O HOH L 346 2.16 REMARK 500 O HOH H 346 O HOH H 427 2.16 REMARK 500 O HOH H 350 O HOH H 459 2.17 REMARK 500 O HOH H 443 O HOH H 465 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE L 29 -60.25 -121.77 REMARK 500 ALA L 51 -51.36 73.38 REMARK 500 TYR L 91 -129.27 55.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FA2 RELATED DB: PDB REMARK 900 RELATED ID: 5FEC RELATED DB: PDB REMARK 900 RELATED ID: 5I9Q RELATED DB: PDB REMARK 900 RELATED ID: 5IGX RELATED DB: PDB DBREF 5F7E H 1 225 PDB 5F7E 5F7E 1 225 DBREF 5F7E L 1 210 PDB 5F7E 5F7E 1 210 SEQRES 1 H 231 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 231 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 231 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 231 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 231 PRO ASN SER GLY GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 231 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 231 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 231 ALA VAL TYR TYR CYS ALA ARG GLU ARG SER ASP PHE TRP SEQRES 9 H 231 ASP PHE ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SEQRES 10 H 231 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 231 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 231 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 231 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 231 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 231 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 231 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 231 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 18 H 231 CYS ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 210 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 210 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 L 210 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 210 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 210 ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 210 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 L 210 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 210 GLU PHE ILE GLY PRO GLY THR LYS VAL ASP ILE LYS ARG SEQRES 9 L 210 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 210 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 210 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 210 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 210 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 210 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 210 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 210 GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 17 L 210 GLU CYS FORMUL 3 HOH *281(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 THR H 72A ILE H 72C 5 3 HELIX 4 AA4 ARG H 83 THR H 87 5 5 HELIX 5 AA5 SER H 127 LYS H 129 5 3 HELIX 6 AA6 SER H 156 ALA H 158 5 3 HELIX 7 AA7 SER H 187 THR H 191 5 5 HELIX 8 AA8 LYS H 201 ASN H 204 5 4 HELIX 9 AA9 GLN L 79 ILE L 83 5 5 HELIX 10 AB1 SER L 117 LYS L 122 1 6 HELIX 11 AB2 LYS L 179 HIS L 185 1 7 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 74 LEU H 79 -1 O ALA H 75 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 76 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 GLU H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N HIS H 35 O ALA H 93 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 GLU H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 PHE H 100B TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O GLN L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 98 ILE L 102 1 O LYS L 99 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 98 SHEET 4 AA8 6 ASN L 34 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 98 ILE L 102 1 O LYS L 99 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 98 SHEET 4 AA9 4 PHE L 93 ILE L 94 -1 O PHE L 93 N GLN L 90 SHEET 1 AB1 4 SER L 110 PHE L 114 0 SHEET 2 AB1 4 THR L 125 PHE L 135 -1 O LEU L 131 N PHE L 112 SHEET 3 AB1 4 TYR L 169 SER L 178 -1 O LEU L 171 N LEU L 132 SHEET 4 AB1 4 SER L 155 VAL L 159 -1 N GLN L 156 O THR L 174 SHEET 1 AB2 4 ALA L 149 LEU L 150 0 SHEET 2 AB2 4 LYS L 141 VAL L 146 -1 N VAL L 146 O ALA L 149 SHEET 3 AB2 4 VAL L 187 THR L 193 -1 O GLU L 191 N GLN L 143 SHEET 4 AB2 4 VAL L 201 ASN L 206 -1 O VAL L 201 N VAL L 192 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.02 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.00 SSBOND 4 CYS L 130 CYS L 190 1555 1555 1.93 CISPEP 1 PHE H 146 PRO H 147 0 -8.68 CISPEP 2 GLU H 148 PRO H 149 0 -3.70 CISPEP 3 SER L 7 PRO L 8 0 -9.14 CISPEP 4 TYR L 136 PRO L 137 0 9.14 CRYST1 74.857 74.857 83.113 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013359 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013359 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012032 0.00000