HEADER TRANSFERASE/HYDROLASE 09-DEC-15 5F84 TITLE CRYSTAL STRUCTURE OF DROSOPHILA POGLUT1 (RUMI) COMPLEXED WITH ITS TITLE 2 GLYCOPROTEIN PRODUCT (GLUCOSYLATED EGF REPEAT) AND UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLUCOSYLTRANSFERASE RUMI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-407; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR IX; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 92-130; COMPND 11 SYNONYM: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC; COMPND 12 EC: 3.4.21.22; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: RUMI, CG31152; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: F9; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, PROTEIN O-GLUCOSYLTRANSFERASE, NOTCH REGULATION, KEYWDS 2 EGF REPEAT, TRANSFERASE-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.J.YU,H.L.LI REVDAT 4 23-OCT-24 5F84 1 HETSYN REVDAT 3 29-JUL-20 5F84 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 18-APR-18 5F84 1 JRNL REMARK REVDAT 1 20-JUL-16 5F84 0 JRNL AUTH H.YU,H.TAKEUCHI,M.TAKEUCHI,Q.LIU,J.KANTHARIA, JRNL AUTH 2 R.S.HALTIWANGER,H.LI JRNL TITL STRUCTURAL ANALYSIS OF NOTCH-REGULATING RUMI REVEALS BASIS JRNL TITL 2 FOR PATHOGENIC MUTATIONS. JRNL REF NAT. CHEM. BIOL. V. 12 735 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27428513 JRNL DOI 10.1038/NCHEMBIO.2135 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1167 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1499 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.330 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3483 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2465 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4717 ; 1.284 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5922 ; 4.196 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;33.600 ;23.390 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;14.942 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3819 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 771 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5F84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22870 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.62M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 135.50800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.23558 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 15.80900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 135.50800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 78.23558 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 15.80900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 135.50800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 78.23558 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 15.80900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 135.50800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 78.23558 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.80900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 135.50800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 78.23558 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 15.80900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 135.50800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 78.23558 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.80900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 156.47116 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 31.61800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 156.47116 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 31.61800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 156.47116 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 31.61800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 156.47116 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 31.61800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 156.47116 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 31.61800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 156.47116 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 31.61800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 505 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 GLN A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 GLU A 21 REMARK 465 ASP A 22 REMARK 465 ASP A 23 REMARK 465 GLY A 24 REMARK 465 LEU A 25 REMARK 465 CYS A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 ASP A 29 REMARK 465 GLN A 30 REMARK 465 LYS A 31 REMARK 465 SER A 32 REMARK 465 CYS A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 35 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 PRO A 38 REMARK 465 ASP A 39 REMARK 465 GLN A 40 REMARK 465 ILE A 41 REMARK 465 LYS A 407 REMARK 465 ALA A 408 REMARK 465 ARG A 409 REMARK 465 ALA A 410 REMARK 465 LEU A 411 REMARK 465 VAL A 412 REMARK 465 PRO A 413 REMARK 465 ARG A 414 REMARK 465 MET B 43 REMARK 465 ASP B 44 REMARK 465 ILE B 45 REMARK 465 VAL B 46 REMARK 465 ASP B 47 REMARK 465 HIS B 87 REMARK 465 HIS B 88 REMARK 465 HIS B 89 REMARK 465 HIS B 90 REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 334 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 53 O5 BGC B 101 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 161 149.96 77.65 REMARK 500 ALA A 162 47.38 -75.49 REMARK 500 ALA A 163 51.97 -103.38 REMARK 500 ARG A 202 59.41 39.96 REMARK 500 ALA A 294 -142.48 -127.09 REMARK 500 TRP A 327 -17.89 76.47 REMARK 500 ASN A 352 54.52 -140.52 REMARK 500 ASP B 65 -152.62 -84.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F85 RELATED DB: PDB REMARK 900 RELATED ID: 5F86 RELATED DB: PDB REMARK 900 RELATED ID: 5F87 RELATED DB: PDB DBREF 5F84 A 21 407 UNP Q8T045 RUMI_DROME 21 407 DBREF 5F84 B 46 84 UNP P00740 FA9_HUMAN 92 130 SEQADV 5F84 ALA A 13 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 ALA A 14 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 GLN A 15 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 PRO A 16 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 ALA A 17 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 GLU A 18 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 ALA A 19 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 LEU A 20 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 ALA A 408 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 ARG A 409 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 ALA A 410 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 LEU A 411 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 VAL A 412 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 PRO A 413 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 ARG A 414 UNP Q8T045 EXPRESSION TAG SEQADV 5F84 MET B 43 UNP P00740 INITIATING METHIONINE SEQADV 5F84 ASP B 44 UNP P00740 EXPRESSION TAG SEQADV 5F84 ILE B 45 UNP P00740 EXPRESSION TAG SEQADV 5F84 LEU B 85 UNP P00740 EXPRESSION TAG SEQADV 5F84 GLU B 86 UNP P00740 EXPRESSION TAG SEQADV 5F84 HIS B 87 UNP P00740 EXPRESSION TAG SEQADV 5F84 HIS B 88 UNP P00740 EXPRESSION TAG SEQADV 5F84 HIS B 89 UNP P00740 EXPRESSION TAG SEQADV 5F84 HIS B 90 UNP P00740 EXPRESSION TAG SEQADV 5F84 HIS B 91 UNP P00740 EXPRESSION TAG SEQADV 5F84 HIS B 92 UNP P00740 EXPRESSION TAG SEQRES 1 A 402 ALA ALA GLN PRO ALA GLU ALA LEU GLU ASP ASP GLY LEU SEQRES 2 A 402 CYS SER ALA ASP GLN LYS SER CYS ALA GLN SER GLU PRO SEQRES 3 A 402 ASP GLN ILE ASN GLU ASP GLU PHE SER PHE LYS ILE ARG SEQRES 4 A 402 ARG GLN ILE GLU LYS ALA ASN ALA ASP TYR LYS PRO CYS SEQRES 5 A 402 SER SER ASP PRO GLN ASP SER ASP CYS SER CYS HIS ALA SEQRES 6 A 402 ASN VAL LEU LYS ARG ASP LEU ALA PRO TYR LYS SER THR SEQRES 7 A 402 GLY VAL THR ARG GLN MET ILE GLU SER SER ALA ARG TYR SEQRES 8 A 402 GLY THR LYS TYR LYS ILE TYR GLY HIS ARG LEU TYR ARG SEQRES 9 A 402 ASP ALA ASN CYS MET PHE PRO ALA ARG CYS GLU GLY ILE SEQRES 10 A 402 GLU HIS PHE LEU LEU PRO LEU VAL ALA THR LEU PRO ASP SEQRES 11 A 402 MET ASP LEU ILE ILE ASN THR ARG ASP TYR PRO GLN LEU SEQRES 12 A 402 ASN ALA ALA TRP GLY ASN ALA ALA GLY GLY PRO VAL PHE SEQRES 13 A 402 SER PHE SER LYS THR LYS GLU TYR ARG ASP ILE MET TYR SEQRES 14 A 402 PRO ALA TRP THR PHE TRP ALA GLY GLY PRO ALA THR LYS SEQRES 15 A 402 LEU HIS PRO ARG GLY ILE GLY ARG TRP ASP GLN MET ARG SEQRES 16 A 402 GLU LYS LEU GLU LYS ARG ALA ALA ALA ILE PRO TRP SER SEQRES 17 A 402 GLN LYS ARG SER LEU GLY PHE PHE ARG GLY SER ARG THR SEQRES 18 A 402 SER ASP GLU ARG ASP SER LEU ILE LEU LEU SER ARG ARG SEQRES 19 A 402 ASN PRO GLU LEU VAL GLU ALA GLN TYR THR LYS ASN GLN SEQRES 20 A 402 GLY TRP LYS SER PRO LYS ASP THR LEU ASP ALA PRO ALA SEQRES 21 A 402 ALA ASP GLU VAL SER PHE GLU ASP HIS CYS LYS TYR LYS SEQRES 22 A 402 TYR LEU PHE ASN PHE ARG GLY VAL ALA ALA SER PHE ARG SEQRES 23 A 402 LEU LYS HIS LEU PHE LEU CYS LYS SER LEU VAL PHE HIS SEQRES 24 A 402 VAL GLY ASP GLU TRP GLN GLU PHE PHE TYR ASP GLN LEU SEQRES 25 A 402 LYS PRO TRP VAL HIS TYR VAL PRO LEU LYS SER TYR PRO SEQRES 26 A 402 SER GLN GLN GLU TYR GLU HIS ILE LEU SER PHE PHE LYS SEQRES 27 A 402 LYS ASN ASP ALA LEU ALA GLN GLU ILE ALA GLN ARG GLY SEQRES 28 A 402 TYR ASP PHE ILE TRP GLU HIS LEU ARG MET LYS ASP ILE SEQRES 29 A 402 LYS CYS TYR TRP ARG LYS LEU LEU LYS ARG TYR VAL LYS SEQRES 30 A 402 LEU LEU GLN TYR GLU VAL LYS PRO GLU ASP GLN LEU ILE SEQRES 31 A 402 TYR ILE GLY PRO LYS ALA ARG ALA LEU VAL PRO ARG SEQRES 1 B 50 MET ASP ILE VAL ASP GLY ASP GLN CYS GLU SER ASN PRO SEQRES 2 B 50 CYS LEU ASN GLY GLY SER CYS LYS ASP ASP ILE ASN SER SEQRES 3 B 50 TYR GLU CYS TRP CYS PRO PHE GLY PHE GLU GLY LYS ASN SEQRES 4 B 50 CYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS HET UDP A 501 25 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET BGC B 101 11 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 BGC C6 H12 O6 FORMUL 10 HOH *95(H2 O) HELIX 1 AA1 ASN A 42 ASP A 60 1 19 HELIX 2 AA2 HIS A 76 ALA A 85 1 10 HELIX 3 AA3 PRO A 86 LYS A 88 5 3 HELIX 4 AA4 THR A 93 ALA A 101 1 9 HELIX 5 AA5 ARG A 102 GLY A 104 5 3 HELIX 6 AA6 PHE A 122 LEU A 134 1 13 HELIX 7 AA7 LEU A 136 LEU A 140 5 5 HELIX 8 AA8 ALA A 183 TRP A 187 5 5 HELIX 9 AA9 ARG A 202 ILE A 217 1 16 HELIX 10 AB1 PRO A 218 LYS A 222 5 5 HELIX 11 AB2 SER A 234 GLU A 236 5 3 HELIX 12 AB3 ARG A 237 ASN A 247 1 11 HELIX 13 AB4 SER A 263 LEU A 268 5 6 HELIX 14 AB5 SER A 277 CYS A 282 1 6 HELIX 15 AB6 PHE A 297 LEU A 304 1 8 HELIX 16 AB7 PHE A 320 LEU A 324 5 5 HELIX 17 AB8 SER A 338 LYS A 351 1 14 HELIX 18 AB9 ASN A 352 LEU A 371 1 20 HELIX 19 AC1 ARG A 372 LYS A 389 1 18 HELIX 20 AC2 ASP B 49 ASN B 54 5 6 SHEET 1 AA1 4 MET A 143 ILE A 147 0 SHEET 2 AA1 4 THR A 105 TYR A 110 -1 N TYR A 107 O LEU A 145 SHEET 3 AA1 4 ARG A 113 ARG A 116 -1 O TYR A 115 N LYS A 108 SHEET 4 AA1 4 ILE A 402 GLY A 405 -1 O GLY A 405 N LEU A 114 SHEET 1 AA2 2 PHE A 168 SER A 169 0 SHEET 2 AA2 2 ILE A 179 MET A 180 1 O ILE A 179 N SER A 169 SHEET 1 AA3 5 VAL A 251 TYR A 255 0 SHEET 2 AA3 5 ARG A 223 GLY A 230 1 N GLY A 226 O GLU A 252 SHEET 3 AA3 5 TYR A 284 PHE A 290 1 O TYR A 286 N PHE A 227 SHEET 4 AA3 5 LEU A 308 VAL A 312 1 O LEU A 308 N LYS A 285 SHEET 5 AA3 5 VAL A 331 LEU A 333 1 O VAL A 331 N VAL A 309 SHEET 1 AA4 2 SER B 61 ASP B 64 0 SHEET 2 AA4 2 TYR B 69 TRP B 72 -1 O TRP B 72 N SER B 61 SHEET 1 AA5 2 PHE B 77 GLU B 78 0 SHEET 2 AA5 2 LEU B 84 LEU B 85 -1 O LEU B 84 N GLU B 78 SSBOND 1 CYS A 64 CYS A 75 1555 1555 2.07 SSBOND 2 CYS A 73 CYS A 378 1555 1555 2.04 SSBOND 3 CYS A 120 CYS A 126 1555 1555 2.04 SSBOND 4 CYS A 282 CYS A 305 1555 1555 2.06 SSBOND 5 CYS B 51 CYS B 62 1555 1555 2.03 SSBOND 6 CYS B 56 CYS B 71 1555 1555 2.02 SSBOND 7 CYS B 73 CYS B 82 1555 1555 2.07 LINK OG SER B 53 C1 BGC B 101 1555 1555 1.36 CISPEP 1 GLY A 160 ASN A 161 0 6.37 CISPEP 2 GLY A 165 PRO A 166 0 4.67 CISPEP 3 GLY A 405 PRO A 406 0 0.70 CRYST1 271.016 271.016 47.427 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003690 0.002130 0.000000 0.00000 SCALE2 0.000000 0.004261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021085 0.00000