HEADER TRANSFERASE 14-DEC-15 5FBQ TITLE PI4KB IN COMPLEX WITH RAB11 AND THE MI358 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4-KINASE BETA,PHOSPHATIDYLINOSITOL 4- COMPND 3 KINASE BETA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 128-422, 523-799; COMPND 6 SYNONYM: PTDINS 4-KINASE BETA,NPIK,PI4K92,PI4KB,PTDINS 4-KINASE BETA, COMPND 7 NPIK,PI4K92,PI4KB; COMPND 8 EC: 2.7.1.67,2.7.1.67; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: RAB-11,YL8; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PI4KB, PIK4CB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAB11A, RAB11; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, KINASE, LIPID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.CHALUPSKA,I.MEJDROVA,R.NENCKA,E.BOURA REVDAT 2 10-JAN-24 5FBQ 1 REMARK REVDAT 1 28-DEC-16 5FBQ 0 JRNL AUTH D.CHALUPSKA,I.MEJDROVA,R.NENCKA,E.BOURA JRNL TITL PI4KB IN COMPLEX WITH RAB11 AND THE MI358 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 9439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8534 - 5.4636 0.96 3105 163 0.2214 0.2910 REMARK 3 2 5.4636 - 4.3375 0.97 2972 157 0.2604 0.3185 REMARK 3 3 4.3375 - 3.7894 0.95 2891 151 0.3048 0.3049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5125 REMARK 3 ANGLE : 0.890 6944 REMARK 3 CHIRALITY : 0.030 797 REMARK 3 PLANARITY : 0.008 868 REMARK 3 DIHEDRAL : 15.600 1876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9508 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.780 REMARK 200 RESOLUTION RANGE LOW (A) : 48.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.21100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4D0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS REMARK 280 PH=7, 10% (W/V) PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.24300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.57750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.24300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.57750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 222 REMARK 465 MET A 223 REMARK 465 HIS A 224 REMARK 465 ILE A 225 REMARK 465 SER A 226 REMARK 465 THR A 227 REMARK 465 GLN A 228 REMARK 465 ARG A 229 REMARK 465 HIS A 230 REMARK 465 SER A 231 REMARK 465 LEU A 244A REMARK 465 LYS A 244B REMARK 465 PRO A 244C REMARK 465 ALA A 244D REMARK 465 HIS A 244E REMARK 465 ARG A 244F REMARK 465 LYS A 244G REMARK 465 ARG A 244H REMARK 465 GLU A 244I REMARK 465 LEU A 244J REMARK 465 PRO A 244K REMARK 465 SER A 244L REMARK 465 LEU A 244M REMARK 465 SER A 244N REMARK 465 PRO A 244O REMARK 465 ALA A 244P REMARK 465 PRO A 244Q REMARK 465 ASP A 244R REMARK 465 THR A 244S REMARK 465 GLY A 244T REMARK 465 LEU A 244U REMARK 465 SER A 244V REMARK 465 PRO A 244W REMARK 465 SER A 244X REMARK 465 LYS A 244Y REMARK 465 ARG A 244Z REMARK 465 THR A 245A REMARK 465 HIS A 245B REMARK 465 GLN A 245C REMARK 465 ARG A 245D REMARK 465 SER A 245E REMARK 465 LYS A 245F REMARK 465 SER A 245G REMARK 465 ASP A 245H REMARK 465 ALA A 245I REMARK 465 THR A 245J REMARK 465 ALA A 245K REMARK 465 SER A 245L REMARK 465 ILE A 245M REMARK 465 SER A 245N REMARK 465 LEU A 245O REMARK 465 SER A 245P REMARK 465 SER A 245Q REMARK 465 ASN A 245R REMARK 465 LEU A 245S REMARK 465 LYS A 245T REMARK 465 ARG A 245U REMARK 465 THR A 245V REMARK 465 ALA A 245W REMARK 465 SER A 245X REMARK 465 ASN A 245Y REMARK 465 PRO A 245Z REMARK 465 LYS A 246A REMARK 465 VAL A 246B REMARK 465 GLU A 246C REMARK 465 ASN A 246D REMARK 465 GLU A 246E REMARK 465 ASP A 246F REMARK 465 GLU A 246G REMARK 465 GLU A 246H REMARK 465 LEU A 246I REMARK 465 SER A 246J REMARK 465 SER A 246K REMARK 465 SER A 246L REMARK 465 THR A 246M REMARK 465 GLU A 246N REMARK 465 SER A 246O REMARK 465 ILE A 246P REMARK 465 ASP A 246Q REMARK 465 ASN A 246R REMARK 465 SER A 246S REMARK 465 PHE A 246T REMARK 465 SER A 246U REMARK 465 SER A 246V REMARK 465 PRO A 246W REMARK 465 VAL A 246X REMARK 465 ARG A 522 REMARK 465 ARG A 523 REMARK 465 ASP A 524 REMARK 465 PRO A 525 REMARK 465 GLU A 526 REMARK 465 ASP A 527 REMARK 465 PRO A 528 REMARK 465 SER A 529 REMARK 465 ALA A 530 REMARK 465 PRO A 698 REMARK 465 ARG A 699 REMARK 465 ASN A 700 REMARK 465 LEU A 701 REMARK 465 GLY A 702 REMARK 465 PHE A 703 REMARK 465 GLU A 704 REMARK 465 THR A 705 REMARK 465 SER A 706 REMARK 465 ALA A 707 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 7 REMARK 465 TYR B 8 REMARK 465 ALA B 68 REMARK 465 GLY B 69 REMARK 465 GLN B 70 REMARK 465 GLU B 71 REMARK 465 ARG B 72 REMARK 465 TYR B 73 REMARK 465 SER B 177 REMARK 465 GLN B 178 REMARK 465 LYS B 179 REMARK 465 GLN B 180 REMARK 465 MET B 181 REMARK 465 SER B 182 REMARK 465 ASP B 183 REMARK 465 ARG B 184 REMARK 465 ARG B 185 REMARK 465 GLU B 186 REMARK 465 ASN B 187 REMARK 465 ASP B 188 REMARK 465 MET B 189 REMARK 465 SER B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 ASN B 193 REMARK 465 ASN B 194 REMARK 465 VAL B 195 REMARK 465 VAL B 196 REMARK 465 PRO B 197 REMARK 465 ILE B 198 REMARK 465 HIS B 199 REMARK 465 VAL B 200 REMARK 465 PRO B 201 REMARK 465 PRO B 202 REMARK 465 THR B 203 REMARK 465 THR B 204 REMARK 465 GLU B 205 REMARK 465 ASN B 206 REMARK 465 LYS B 207 REMARK 465 PRO B 208 REMARK 465 LYS B 209 REMARK 465 VAL B 210 REMARK 465 GLN B 211 REMARK 465 CYS B 212 REMARK 465 CYS B 213 REMARK 465 GLN B 214 REMARK 465 ASN B 215 REMARK 465 ILE B 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ASN A 406 CG OD1 ND2 REMARK 470 GLU A 587 CG CD OE1 OE2 REMARK 470 ASP A 606 CG OD1 OD2 REMARK 470 TYR B 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 81 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 ASP B 157 CG OD1 OD2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 598 O ILE A 688 2.19 REMARK 500 O PHE B 31 NH1 ARG B 51 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 349 C - N - CD ANGL. DEV. = -26.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 347 38.99 -92.14 REMARK 500 LYS A 379 63.42 -114.62 REMARK 500 ARG A 590 66.58 -119.44 REMARK 500 PRO A 592 39.78 -86.37 REMARK 500 ILE A 688 -34.98 -134.45 REMARK 500 PHE A 690 30.97 -92.66 REMARK 500 PHE A 692 70.47 63.91 REMARK 500 LEU A 694 -125.91 59.98 REMARK 500 LEU A 710 78.48 -106.51 REMARK 500 LYS B 125 45.44 73.03 REMARK 500 ASN B 146 -163.18 -110.70 REMARK 500 TYR B 173 -15.70 -48.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 47 PHE B 48 148.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5W6 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 301 DBREF 5FBQ A 128 522 UNP Q9UBF8 PI4KB_HUMAN 128 422 DBREF 5FBQ A 523 799 UNP Q9UBF8 PI4KB_HUMAN 523 799 DBREF 5FBQ B 1 216 UNP P62491 RB11A_HUMAN 1 216 SEQADV 5FBQ GLY B -4 UNP P62491 EXPRESSION TAG SEQADV 5FBQ ALA B -3 UNP P62491 EXPRESSION TAG SEQADV 5FBQ MET B -2 UNP P62491 EXPRESSION TAG SEQADV 5FBQ GLY B -1 UNP P62491 EXPRESSION TAG SEQADV 5FBQ SER B 0 UNP P62491 EXPRESSION TAG SEQRES 1 A 572 SER TRP LEU LEU ARG LEU PHE GLU SER LYS LEU PHE ASP SEQRES 2 A 572 ILE SER MET ALA ILE SER TYR LEU TYR ASN SER LYS GLU SEQRES 3 A 572 PRO GLY VAL GLN ALA TYR ILE GLY ASN ARG LEU PHE CYS SEQRES 4 A 572 PHE ARG ASN GLU ASP VAL ASP PHE TYR LEU PRO GLN LEU SEQRES 5 A 572 LEU ASN MET TYR ILE HIS MET ASP GLU ASP VAL GLY ASP SEQRES 6 A 572 ALA ILE LYS PRO TYR ILE VAL HIS ARG CYS ARG GLN SER SEQRES 7 A 572 ILE ASN PHE SER LEU GLN CYS ALA LEU LEU LEU GLY ALA SEQRES 8 A 572 TYR SER SER ASP MET HIS ILE SER THR GLN ARG HIS SER SEQRES 9 A 572 ARG GLY THR LYS LEU ARG LYS LEU ILE LEU SER ASP GLU SEQRES 10 A 572 LEU LYS PRO ALA HIS ARG LYS ARG GLU LEU PRO SER LEU SEQRES 11 A 572 SER PRO ALA PRO ASP THR GLY LEU SER PRO SER LYS ARG SEQRES 12 A 572 THR HIS GLN ARG SER LYS SER ASP ALA THR ALA SER ILE SEQRES 13 A 572 SER LEU SER SER ASN LEU LYS ARG THR ALA SER ASN PRO SEQRES 14 A 572 LYS VAL GLU ASN GLU ASP GLU GLU LEU SER SER SER THR SEQRES 15 A 572 GLU SER ILE ASP ASN SER PHE SER SER PRO VAL ARG LEU SEQRES 16 A 572 ALA PRO GLU ARG GLU PHE ILE LYS SER LEU MET ALA ILE SEQRES 17 A 572 GLY LYS ARG LEU ALA THR LEU PRO THR LYS GLU GLN LYS SEQRES 18 A 572 THR GLN ARG LEU ILE SER GLU LEU SER LEU LEU ASN HIS SEQRES 19 A 572 LYS LEU PRO ALA ARG VAL TRP LEU PRO THR ALA GLY PHE SEQRES 20 A 572 ASP HIS HIS VAL VAL ARG VAL PRO HIS THR GLN ALA VAL SEQRES 21 A 572 VAL LEU ASN SER LYS ASP LYS ALA PRO TYR LEU ILE TYR SEQRES 22 A 572 VAL GLU VAL LEU GLU CYS GLU ASN PHE ASP THR THR SER SEQRES 23 A 572 VAL PRO ALA ARG ILE PRO GLU ASN ARG ARG ASP PRO GLU SEQRES 24 A 572 ASP PRO SER ALA VAL ALA LEU LYS GLU PRO TRP GLN GLU SEQRES 25 A 572 LYS VAL ARG ARG ILE ARG GLU GLY SER PRO TYR GLY HIS SEQRES 26 A 572 LEU PRO ASN TRP ARG LEU LEU SER VAL ILE VAL LYS CYS SEQRES 27 A 572 GLY ASP ASP LEU ARG GLN GLU LEU LEU ALA PHE GLN VAL SEQRES 28 A 572 LEU LYS GLN LEU GLN SER ILE TRP GLU GLN GLU ARG VAL SEQRES 29 A 572 PRO LEU TRP ILE LYS PRO TYR LYS ILE LEU VAL ILE SER SEQRES 30 A 572 ALA ASP SER GLY MET ILE GLU PRO VAL VAL ASN ALA VAL SEQRES 31 A 572 SER ILE HIS GLN VAL LYS LYS GLN SER GLN LEU SER LEU SEQRES 32 A 572 LEU ASP TYR PHE LEU GLN GLU HIS GLY SER TYR THR THR SEQRES 33 A 572 GLU ALA PHE LEU SER ALA GLN ARG ASN PHE VAL GLN SER SEQRES 34 A 572 CYS ALA GLY TYR CYS LEU VAL CYS TYR LEU LEU GLN VAL SEQRES 35 A 572 LYS ASP ARG HIS ASN GLY ASN ILE LEU LEU ASP ALA GLU SEQRES 36 A 572 GLY HIS ILE ILE HIS ILE ASP PHE GLY PHE ILE LEU SER SEQRES 37 A 572 SER SER PRO ARG ASN LEU GLY PHE GLU THR SER ALA PHE SEQRES 38 A 572 LYS LEU THR THR GLU PHE VAL ASP VAL MET GLY GLY LEU SEQRES 39 A 572 ASP GLY ASP MET PHE ASN TYR TYR LYS MET LEU MET LEU SEQRES 40 A 572 GLN GLY LEU ILE ALA ALA ARG LYS HIS MET ASP LYS VAL SEQRES 41 A 572 VAL GLN ILE VAL GLU ILE MET GLN GLN GLY SER GLN LEU SEQRES 42 A 572 PRO CYS PHE HIS GLY SER SER THR ILE ARG ASN LEU LYS SEQRES 43 A 572 GLU ARG PHE HIS MET SER MET THR GLU GLU GLN LEU GLN SEQRES 44 A 572 LEU LEU VAL GLU GLN MET VAL ASP GLY SER MET ARG SER SEQRES 1 B 221 GLY ALA MET GLY SER MET GLY THR ARG ASP ASP GLU TYR SEQRES 2 B 221 ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SER GLY SEQRES 3 B 221 VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR ARG ASN SEQRES 4 B 221 GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY VAL GLU SEQRES 5 B 221 PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS THR ILE SEQRES 6 B 221 LYS ALA GLN ILE TRP ASP THR ALA GLY GLN GLU ARG TYR SEQRES 7 B 221 ARG ALA ILE THR SER ALA TYR TYR ARG GLY ALA VAL GLY SEQRES 8 B 221 ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU THR TYR SEQRES 9 B 221 GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG ASP HIS SEQRES 10 B 221 ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY ASN LYS SEQRES 11 B 221 SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR ASP GLU SEQRES 12 B 221 ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SER PHE ILE SEQRES 13 B 221 GLU THR SER ALA LEU ASP SER THR ASN VAL GLU ALA ALA SEQRES 14 B 221 PHE GLN THR ILE LEU THR GLU ILE TYR ARG ILE VAL SER SEQRES 15 B 221 GLN LYS GLN MET SER ASP ARG ARG GLU ASN ASP MET SER SEQRES 16 B 221 PRO SER ASN ASN VAL VAL PRO ILE HIS VAL PRO PRO THR SEQRES 17 B 221 THR GLU ASN LYS PRO LYS VAL GLN CYS CYS GLN ASN ILE HET 5W6 A 801 37 HET GDP B 301 40 HETNAM 5W6 ~{N}-[2-[[6-CHLORANYL-3-[3-[4-(HYDROXYMETHYL)PIPERIDIN- HETNAM 2 5W6 1-YL]SULFONYL-4-METHOXY-PHENYL]-2-METHYL-IMIDAZO[1,2- HETNAM 3 5W6 B]PYRIDAZIN-8-YL]AMINO]ETHYL]ETHANAMIDE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 5W6 C24 H31 CL N6 O5 S FORMUL 4 GDP C10 H15 N5 O11 P2 HELIX 1 AA1 SER A 128 GLU A 135 1 8 HELIX 2 AA2 ASP A 140 SER A 151 1 12 HELIX 3 AA3 GLU A 153 LEU A 164 1 12 HELIX 4 AA4 PHE A 165 PHE A 167 5 3 HELIX 5 AA5 ARG A 168 PHE A 174 1 7 HELIX 6 AA6 TYR A 175 MET A 186 1 12 HELIX 7 AA7 ASP A 187 SER A 205 1 19 HELIX 8 AA8 SER A 205 TYR A 219 1 15 HELIX 9 AA9 GLY A 233 SER A 242 1 10 HELIX 10 AB1 LEU A 307 LEU A 324 1 18 HELIX 11 AB2 ALA A 325 LEU A 327 5 3 HELIX 12 AB3 THR A 329 LYS A 347 1 19 HELIX 13 AB4 PRO A 367 ALA A 371 5 5 HELIX 14 AB5 ASN A 393 THR A 397 5 5 HELIX 15 AB6 PRO A 536 SER A 548 1 13 HELIX 16 AB7 PRO A 549 LEU A 553 5 5 HELIX 17 AB8 LEU A 569 GLU A 589 1 21 HELIX 18 AB9 ILE A 619 GLN A 627 1 9 HELIX 19 AC1 SER A 629 GLY A 639 1 11 HELIX 20 AC2 THR A 643 LEU A 667 1 25 HELIX 21 AC3 THR A 711 MET A 718 1 8 HELIX 22 AC4 GLY A 723 LYS A 742 1 20 HELIX 23 AC5 HIS A 743 GLN A 755 1 13 HELIX 24 AC6 LEU A 760 HIS A 764 5 5 HELIX 25 AC7 SER A 767 ARG A 775 1 9 HELIX 26 AC8 THR A 781 ARG A 798 1 18 HELIX 27 AC9 GLY B 23 ASN B 34 1 12 HELIX 28 AD1 THR B 77 ARG B 82 5 6 HELIX 29 AD2 LYS B 95 ASN B 101 1 7 HELIX 30 AD3 ASN B 101 ALA B 113 1 13 HELIX 31 AD4 LEU B 128 ARG B 132 5 5 HELIX 32 AD5 PRO B 135 ASN B 146 1 12 HELIX 33 AD6 ASN B 160 ARG B 174 1 15 SHEET 1 AA1 3 HIS A 361 ARG A 365 0 SHEET 2 AA1 3 TYR A 382 GLU A 390 -1 O GLU A 387 N ARG A 365 SHEET 3 AA1 3 VAL A 372 VAL A 373 -1 N VAL A 372 O LEU A 383 SHEET 1 AA2 5 HIS A 361 ARG A 365 0 SHEET 2 AA2 5 TYR A 382 GLU A 390 -1 O GLU A 387 N ARG A 365 SHEET 3 AA2 5 TRP A 556 LYS A 564 -1 O LEU A 559 N VAL A 386 SHEET 4 AA2 5 GLY A 608 ILE A 610 -1 O ILE A 610 N ILE A 562 SHEET 5 AA2 5 ILE A 600 VAL A 602 -1 N LEU A 601 O MET A 609 SHEET 1 AA3 3 ALA A 616 SER A 618 0 SHEET 2 AA3 3 ILE A 677 ASP A 680 -1 O LEU A 679 N VAL A 617 SHEET 3 AA3 3 ILE A 685 HIS A 687 -1 O ILE A 686 N LEU A 678 SHEET 1 AA4 6 GLU B 47 VAL B 55 0 SHEET 2 AA4 6 LYS B 58 ASP B 66 -1 O ASP B 66 N GLU B 47 SHEET 3 AA4 6 TYR B 10 ILE B 17 1 N VAL B 14 O GLN B 63 SHEET 4 AA4 6 GLY B 86 ASP B 92 1 O VAL B 90 N ILE B 17 SHEET 5 AA4 6 VAL B 118 ASN B 124 1 O VAL B 122 N TYR B 91 SHEET 6 AA4 6 SER B 149 THR B 153 1 O SER B 149 N LEU B 121 SITE 1 AC1 15 LEU A 374 TYR A 385 TRP A 537 ILE A 562 SITE 2 AC1 15 LYS A 564 TYR A 598 ILE A 610 GLU A 611 SITE 3 AC1 15 PRO A 612 VAL A 613 VAL A 614 ALA A 616 SITE 4 AC1 15 GLY A 675 ASN A 676 ILE A 688 SITE 1 AC2 16 GLY A 155 GLY B 21 VAL B 22 GLY B 23 SITE 2 AC2 16 LYS B 24 SER B 25 ASN B 26 PHE B 36 SITE 3 AC2 16 LEU B 38 SER B 40 ASN B 124 ASP B 127 SITE 4 AC2 16 LEU B 128 SER B 154 ALA B 155 LEU B 156 CRYST1 48.759 101.155 188.486 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020509 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005305 0.00000