HEADER HYDROLASE 15-DEC-15 5FC6 TITLE MURINE SMPDL3A IN COMPLEX WITH ADP ANALOG AMPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACID SPHINGOMYELINASE-LIKE PHOSPHODIESTERASE 3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-445; COMPND 5 SYNONYM: ASM-LIKE PHOSPHODIESTERASE 3A; COMPND 6 EC: 3.1.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SMPDL3A, ASML3A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SMPDL3A, SPHINGOMYELIN, NUCLEOTIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,K.ILLES,G.SUPERTI-FURGA,B.NAGAR REVDAT 5 13-NOV-24 5FC6 1 HETSYN LINK REVDAT 4 29-JUL-20 5FC6 1 COMPND JRNL REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 30-MAR-16 5FC6 1 JRNL REVDAT 2 03-FEB-16 5FC6 1 JRNL REVDAT 1 27-JAN-16 5FC6 0 JRNL AUTH A.GORELIK,K.ILLES,G.SUPERTI-FURGA,B.NAGAR JRNL TITL STRUCTURAL BASIS FOR NUCLEOTIDE HYDROLYSIS BY THE ACID JRNL TITL 2 SPHINGOMYELINASE-LIKE PHOSPHODIESTERASE SMPDL3A. JRNL REF J.BIOL.CHEM. V. 291 6376 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26792860 JRNL DOI 10.1074/JBC.M115.711085 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 78504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4158 - 5.0320 1.00 2860 150 0.1556 0.1882 REMARK 3 2 5.0320 - 3.9948 1.00 2755 146 0.1096 0.1277 REMARK 3 3 3.9948 - 3.4900 1.00 2715 143 0.1296 0.1668 REMARK 3 4 3.4900 - 3.1710 1.00 2732 143 0.1389 0.1761 REMARK 3 5 3.1710 - 2.9438 1.00 2702 141 0.1441 0.1624 REMARK 3 6 2.9438 - 2.7703 1.00 2685 142 0.1471 0.1825 REMARK 3 7 2.7703 - 2.6315 1.00 2713 143 0.1373 0.1635 REMARK 3 8 2.6315 - 2.5170 1.00 2660 142 0.1440 0.1806 REMARK 3 9 2.5170 - 2.4201 1.00 2706 140 0.1407 0.1831 REMARK 3 10 2.4201 - 2.3366 1.00 2666 142 0.1423 0.1449 REMARK 3 11 2.3366 - 2.2635 1.00 2698 142 0.1471 0.1479 REMARK 3 12 2.2635 - 2.1988 1.00 2676 139 0.1536 0.1988 REMARK 3 13 2.1988 - 2.1409 1.00 2658 140 0.1641 0.2110 REMARK 3 14 2.1409 - 2.0887 1.00 2675 144 0.1697 0.2274 REMARK 3 15 2.0887 - 2.0412 1.00 2677 141 0.1763 0.1960 REMARK 3 16 2.0412 - 1.9978 1.00 2652 139 0.2022 0.2228 REMARK 3 17 1.9978 - 1.9578 1.00 2656 138 0.2051 0.2443 REMARK 3 18 1.9578 - 1.9209 1.00 2659 140 0.2095 0.2620 REMARK 3 19 1.9209 - 1.8866 1.00 2671 140 0.2147 0.2565 REMARK 3 20 1.8866 - 1.8546 1.00 2642 138 0.2240 0.2488 REMARK 3 21 1.8546 - 1.8247 1.00 2659 143 0.2392 0.2602 REMARK 3 22 1.8247 - 1.7966 1.00 2664 139 0.2467 0.2625 REMARK 3 23 1.7966 - 1.7702 0.99 2646 142 0.2654 0.2759 REMARK 3 24 1.7702 - 1.7452 1.00 2612 136 0.2910 0.3262 REMARK 3 25 1.7452 - 1.7217 1.00 2667 143 0.3159 0.3519 REMARK 3 26 1.7217 - 1.6993 0.99 2629 139 0.3334 0.3829 REMARK 3 27 1.6993 - 1.6781 0.98 2606 137 0.3548 0.3777 REMARK 3 28 1.6781 - 1.6578 0.85 2231 120 0.3787 0.4401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3817 REMARK 3 ANGLE : 1.083 5262 REMARK 3 CHIRALITY : 0.063 617 REMARK 3 PLANARITY : 0.008 645 REMARK 3 DIHEDRAL : 10.753 2284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.658 REMARK 200 RESOLUTION RANGE LOW (A) : 45.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE, PEG, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.25950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.25950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.44400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.44400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.25950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.44400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.25950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.44400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 715 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1112 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 13 REMARK 465 ARG A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 611 O HOH A 695 2.02 REMARK 500 O HOH A 959 O HOH A 960 2.08 REMARK 500 O HOH A 933 O HOH A 1023 2.09 REMARK 500 O HOH A 641 O HOH A 917 2.09 REMARK 500 O HOH A 1006 O HOH A 1009 2.09 REMARK 500 O ASP A 53 O HOH A 601 2.12 REMARK 500 O HOH A 1100 O HOH A 1117 2.18 REMARK 500 O HOH A 996 O HOH A 1089 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 21.88 -144.58 REMARK 500 ASN A 69 64.92 -163.41 REMARK 500 ASP A 107 72.94 73.45 REMARK 500 ASP A 150 41.27 -84.05 REMARK 500 ASP A 155 -11.00 75.61 REMARK 500 GLN A 156 51.23 -92.19 REMARK 500 ALA A 224 17.59 58.91 REMARK 500 HIS A 249 -70.55 -81.61 REMARK 500 HIS A 290 -37.05 69.87 REMARK 500 TYR A 342 6.71 83.21 REMARK 500 ASP A 379 -167.94 -168.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1119 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD2 REMARK 620 2 HIS A 44 NE2 110.9 REMARK 620 3 ASP A 107 OD2 84.9 89.2 REMARK 620 4 HIS A 292 NE2 93.7 102.0 168.4 REMARK 620 5 AP2 A 520 O1B 160.9 84.1 83.5 94.6 REMARK 620 6 AP2 A 520 O3B 100.4 142.9 73.8 95.1 61.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 ASN A 148 OD1 104.4 REMARK 620 3 HIS A 249 NE2 81.4 89.0 REMARK 620 4 HIS A 290 ND1 156.7 98.6 95.7 REMARK 620 5 AP2 A 520 O2B 88.6 89.1 169.0 95.3 REMARK 620 6 AP2 A 520 O3B 71.6 155.8 113.3 88.8 67.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FC1 RELATED DB: PDB REMARK 900 RELATED ID: 5FC5 RELATED DB: PDB REMARK 900 RELATED ID: 5FC7 RELATED DB: PDB REMARK 900 RELATED ID: 5FCA RELATED DB: PDB REMARK 900 RELATED ID: 5FCB RELATED DB: PDB DBREF 5FC6 A 23 445 UNP P70158 ASM3A_MOUSE 23 445 SEQADV 5FC6 ASP A 13 UNP P70158 EXPRESSION TAG SEQADV 5FC6 ARG A 14 UNP P70158 EXPRESSION TAG SEQADV 5FC6 HIS A 15 UNP P70158 EXPRESSION TAG SEQADV 5FC6 HIS A 16 UNP P70158 EXPRESSION TAG SEQADV 5FC6 HIS A 17 UNP P70158 EXPRESSION TAG SEQADV 5FC6 HIS A 18 UNP P70158 EXPRESSION TAG SEQADV 5FC6 HIS A 19 UNP P70158 EXPRESSION TAG SEQADV 5FC6 HIS A 20 UNP P70158 EXPRESSION TAG SEQADV 5FC6 LYS A 21 UNP P70158 EXPRESSION TAG SEQADV 5FC6 LEU A 22 UNP P70158 EXPRESSION TAG SEQRES 1 A 433 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU VAL PRO LEU SEQRES 2 A 433 ALA PRO ALA ASP ARG ALA PRO ALA VAL GLY GLN PHE TRP SEQRES 3 A 433 HIS VAL THR ASP LEU HIS LEU ASP PRO THR TYR HIS ILE SEQRES 4 A 433 THR ASP ASP ARG THR LYS VAL CYS ALA SER SER LYS GLY SEQRES 5 A 433 ALA ASN ALA SER ASN PRO GLY PRO PHE GLY ASP VAL LEU SEQRES 6 A 433 CYS ASP SER PRO TYR GLN LEU ILE LEU SER ALA PHE ASP SEQRES 7 A 433 PHE ILE LYS ASN SER GLY GLN GLU ALA SER PHE MET ILE SEQRES 8 A 433 TRP THR GLY ASP SER PRO PRO HIS VAL PRO VAL PRO GLU SEQRES 9 A 433 LEU SER THR GLY THR VAL ILE LYS VAL ILE THR ASN MET SEQRES 10 A 433 THR MET THR VAL GLN ASN LEU PHE PRO ASN LEU GLN VAL SEQRES 11 A 433 PHE PRO ALA LEU GLY ASN HIS ASP TYR TRP PRO GLN ASP SEQRES 12 A 433 GLN LEU PRO ILE VAL THR SER LYS VAL TYR SER ALA VAL SEQRES 13 A 433 ALA ASP LEU TRP LYS PRO TRP LEU GLY GLU GLU ALA ILE SEQRES 14 A 433 SER THR LEU LYS LYS GLY GLY PHE TYR SER GLN LYS VAL SEQRES 15 A 433 ALA SER ASN PRO GLY LEU ARG ILE ILE SER LEU ASN THR SEQRES 16 A 433 ASN LEU TYR TYR GLY PRO ASN ILE MET THR LEU ASN LYS SEQRES 17 A 433 THR ASP PRO ALA ASN GLN PHE GLU TRP LEU GLU ASN THR SEQRES 18 A 433 LEU ASN SER SER LEU TRP ASN LYS GLU LYS VAL TYR ILE SEQRES 19 A 433 ILE ALA HIS VAL PRO VAL GLY TYR LEU PRO TYR ALA THR SEQRES 20 A 433 ASP THR PRO ALA ILE ARG GLN TYR TYR ASN GLU LYS LEU SEQRES 21 A 433 LEU ASP ILE PHE ARG ARG TYR SER SER VAL ILE ALA GLY SEQRES 22 A 433 GLN PHE TYR GLY HIS THR HIS ARG ASP SER LEU MET VAL SEQRES 23 A 433 LEU SER ASP LYS ASN GLY ASN PRO LEU ASN SER VAL PHE SEQRES 24 A 433 VAL ALA PRO ALA VAL THR PRO VAL LYS GLY VAL LEU GLN SEQRES 25 A 433 LYS GLU THR ASN ASN PRO GLY VAL ARG LEU PHE GLN TYR SEQRES 26 A 433 LYS PRO GLY ASP TYR THR LEU LEU ASP MET VAL GLN TYR SEQRES 27 A 433 TYR LEU ASN LEU THR GLU ALA ASN LEU LYS GLY GLU SER SEQRES 28 A 433 ASN TRP THR LEU GLU TYR VAL LEU THR GLN ALA TYR SER SEQRES 29 A 433 VAL ALA ASP LEU GLN PRO LYS SER LEU TYR ALA LEU VAL SEQRES 30 A 433 GLN GLN PHE ALA THR LYS ASP SER LYS GLN PHE LEU LYS SEQRES 31 A 433 TYR TYR HIS TYR TYR PHE VAL SER TYR ASP SER SER ALA SEQRES 32 A 433 THR CYS ASP GLN HIS CYS LYS THR LEU GLN VAL CYS ALA SEQRES 33 A 433 ILE MET ASN LEU ASP SER MET SER TYR ASP ASP CYS LEU SEQRES 34 A 433 LYS GLN HIS LEU HET NAG B 1 26 HET NAG B 2 28 HET FUC B 3 21 HET NAG C 1 26 HET NAG C 2 28 HET NAG D 1 27 HET NAG D 2 27 HET BMA D 3 20 HET MAN D 4 22 HET MAN D 5 22 HET NAG E 1 26 HET NAG E 2 28 HET FUC E 3 21 HET ZN A 501 1 HET ZN A 502 1 HET GOL A 516 14 HET GOL A 517 14 HET GOL A 518 14 HET GOL A 519 13 HET AP2 A 520 41 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM AP2 PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 6 ZN 2(ZN 2+) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 AP2 C11 H17 N5 O9 P2 FORMUL 13 HOH *520(H2 O) HELIX 1 AA1 CYS A 59 LYS A 63 5 5 HELIX 2 AA2 PRO A 81 ASN A 94 1 14 HELIX 3 AA3 PRO A 113 LEU A 117 5 5 HELIX 4 AA4 SER A 118 PHE A 137 1 20 HELIX 5 AA5 SER A 162 TRP A 172 1 11 HELIX 6 AA6 GLY A 177 GLY A 188 1 12 HELIX 7 AA7 ASN A 206 TYR A 211 5 6 HELIX 8 AA8 ASN A 214 LEU A 218 5 5 HELIX 9 AA9 ASP A 222 ALA A 224 5 3 HELIX 10 AB1 ASN A 225 ASN A 240 1 16 HELIX 11 AB2 ARG A 265 TYR A 279 1 15 HELIX 12 AB3 ASN A 353 GLY A 361 1 9 HELIX 13 AB4 LEU A 371 SER A 376 1 6 HELIX 14 AB5 GLN A 381 ALA A 393 1 13 HELIX 15 AB6 SER A 397 PHE A 408 1 12 HELIX 16 AB7 ASP A 418 ASN A 431 1 14 HELIX 17 AB8 ASP A 433 LEU A 445 1 13 SHEET 1 AA1 6 GLN A 141 PRO A 144 0 SHEET 2 AA1 6 PHE A 101 TRP A 104 1 N MET A 102 O PHE A 143 SHEET 3 AA1 6 GLY A 35 VAL A 40 1 N TRP A 38 O ILE A 103 SHEET 4 AA1 6 GLY A 331 TYR A 337 -1 O PHE A 335 N PHE A 37 SHEET 5 AA1 6 LEU A 344 TYR A 351 -1 O VAL A 348 N LEU A 334 SHEET 6 AA1 6 THR A 366 VAL A 370 -1 O GLU A 368 N GLN A 349 SHEET 1 AA2 6 TYR A 190 LYS A 193 0 SHEET 2 AA2 6 LEU A 200 SER A 204 -1 O SER A 204 N TYR A 190 SHEET 3 AA2 6 LYS A 243 ALA A 248 1 O ILE A 247 N ILE A 203 SHEET 4 AA2 6 ILE A 283 TYR A 288 1 O ALA A 284 N VAL A 244 SHEET 5 AA2 6 PRO A 306 VAL A 312 1 O PHE A 311 N GLN A 286 SHEET 6 AA2 6 SER A 295 SER A 300 -1 N LEU A 299 O LEU A 307 SSBOND 1 CYS A 59 CYS A 78 1555 1555 2.05 SSBOND 2 CYS A 417 CYS A 421 1555 1555 2.07 SSBOND 3 CYS A 427 CYS A 440 1555 1555 2.09 LINK ND2 ASN A 66 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 128 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 235 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 353 C1 NAG D 1 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.47 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.44 LINK OD2 ASP A 42 ZN ZN A 501 1555 1555 2.00 LINK NE2 HIS A 44 ZN ZN A 501 1555 1555 2.13 LINK OD2 ASP A 107 ZN ZN A 501 1555 1555 2.43 LINK OD2 ASP A 107 ZN ZN A 502 1555 1555 2.38 LINK OD1 ASN A 148 ZN ZN A 502 1555 1555 2.04 LINK NE2 HIS A 249 ZN ZN A 502 1555 1555 2.06 LINK ND1 HIS A 290 ZN ZN A 502 1555 1555 2.20 LINK NE2 HIS A 292 ZN ZN A 501 1555 1555 2.18 LINK ZN ZN A 501 O1B AP2 A 520 1555 1555 2.61 LINK ZN ZN A 501 O3B AP2 A 520 1555 1555 2.11 LINK ZN ZN A 502 O2B AP2 A 520 1555 1555 2.18 LINK ZN ZN A 502 O3B AP2 A 520 1555 1555 2.31 CISPEP 1 TRP A 152 PRO A 153 0 -8.18 CRYST1 124.351 132.888 80.519 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012419 0.00000