HEADER TRANSFERASE 15-DEC-15 5FCT TITLE MOUSE THYMIDYLATE SYNTHASE IN TERNARY COMPLEX WITH FDUMP AND TITLE 2 METHYLENETETRAHYDROFOLATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THYMIDYLATE SYNTHASE,ISOFORM CRA_B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TYMS, MCG_11630; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, ENZYME, INHIBITOR, COFACTOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DOWIERCIAL,P.WILK,A.JARMULA,W.RODE REVDAT 5 06-NOV-24 5FCT 1 REMARK REVDAT 4 10-JAN-24 5FCT 1 REMARK REVDAT 3 04-APR-18 5FCT 1 REMARK REVDAT 2 13-SEP-17 5FCT 1 REMARK REVDAT 1 26-OCT-16 5FCT 0 JRNL AUTH A.DOWIERCIAL,A.JARMULA,P.WILK,W.RYPNIEWSKI,M.KOWALSKA, JRNL AUTH 2 T.FRACZYK,J.CIESLA,W.RODE JRNL TITL MOUSE THYMIDYLATE SYNTHASE DOES NOT SHOW THE INACTIVE JRNL TITL 2 CONFORMATION, OBSERVED FOR THE HUMAN ENZYME JRNL REF STRUCT CHEM 2016 JRNL REFN ESSN 1572-9001 JRNL DOI 10.1007/S11224-016-0840-8 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 81162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 291 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 661 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.151 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5213 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4923 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7097 ; 1.415 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11390 ; 0.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 644 ; 6.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;35.039 ;23.896 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 923 ;12.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 733 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5981 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1255 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2435 ; 1.492 ; 1.440 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2431 ; 1.493 ; 1.438 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3073 ; 1.914 ; 2.168 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3072 ; 1.914 ; 2.168 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2778 ; 2.459 ; 1.771 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2779 ; 2.458 ; 1.771 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4006 ; 2.883 ; 2.526 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6514 ; 3.885 ;13.823 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6119 ; 3.222 ;12.654 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10136 ; 1.841 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 170 ;27.562 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 10464 ; 9.844 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : AGILENT SUPERNOVA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT ATLAS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85416 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 26.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CRYSALISPRO REMARK 200 STARTING MODEL: 4EZ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 8K, MGACETATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 280.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.65100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 GLN A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 ALA A 12 REMARK 465 GLN A 13 REMARK 465 GLN A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 VAL B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 GLN B 14 REMARK 465 LEU B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 GLU B 18 REMARK 465 ALA B 19 REMARK 465 PRO B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 721 O HOH B 727 1.84 REMARK 500 O HOH A 517 O HOH A 833 1.90 REMARK 500 O HOH A 614 O HOH A 651 1.96 REMARK 500 O HOH B 617 O HOH B 727 2.03 REMARK 500 O HOH A 589 O HOH A 833 2.05 REMARK 500 O HOH A 756 O HOH A 829 2.10 REMARK 500 O HOH A 644 O HOH A 825 2.11 REMARK 500 O HOH A 581 O HOH A 792 2.15 REMARK 500 O HOH A 663 O HOH A 766 2.15 REMARK 500 O HOH A 796 O HOH A 849 2.16 REMARK 500 F5 UFP B 401 C11 C2F B 402 2.17 REMARK 500 F5 UFP B 401 C11 C2F B 402 2.17 REMARK 500 O HOH A 638 O HOH A 792 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 128 -158.20 -95.86 REMARK 500 HIS A 135 34.88 -145.21 REMARK 500 LYS A 141 -77.96 -117.12 REMARK 500 LYS A 141 -79.19 -116.22 REMARK 500 ASN A 165 76.38 -150.91 REMARK 500 LEU A 215 -62.93 -109.98 REMARK 500 PHE B 117 53.10 -98.62 REMARK 500 VAL B 128 -156.56 -93.89 REMARK 500 HIS B 135 33.97 -143.46 REMARK 500 LYS B 141 -84.22 -109.90 REMARK 500 ASN B 165 67.37 -151.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 873 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 788 DISTANCE = 6.13 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UFP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2F A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues UFP B 401 and C2F B REMARK 800 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues UFP B 401 and C2F B REMARK 800 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide UFP B 401 and CYS B REMARK 800 189 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IHI RELATED DB: PDB REMARK 900 3IHI CONTAINS THE SAME PROTEIN WITHOUT LIGANDS. REMARK 900 RELATED ID: 4E50 RELATED DB: PDB REMARK 900 4E50 CONTAINS THE SAME PROTEIN COMPLEXED WITH DUMP. REMARK 900 RELATED ID: 4EB4 RELATED DB: PDB REMARK 900 4EB4 CONTAINS THE SAME PROTEIN COMPLEXED WITH DUMP AND TOMUDEX. REMARK 900 RELATED ID: 4EIN RELATED DB: PDB REMARK 900 4EIN CONTAINS THE SAME PROTEIN COMPLEXED WITH N(4)-HYDROXY-2'- REMARK 900 DEOXYCYTIDINE-5'-MONOPHOSPHATE. REMARK 900 RELATED ID: 4EZ8 RELATED DB: PDB REMARK 900 4EZ8 CONTAINS THE SAME PROTEIN COMPLEXED WITH N(4)-HYDROXY-2'- REMARK 900 DEOXYCYTIDINE-5'-MONOPHOSPHATE AND DIHYDROFOLATE. DBREF 5FCT A 1 307 UNP Q544L2 Q544L2_MOUSE 1 307 DBREF 5FCT B 1 307 UNP Q544L2 Q544L2_MOUSE 1 307 SEQRES 1 A 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 A 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 A 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 A 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 A 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 A 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 A 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 A 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 A 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 A 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 A 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 A 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 A 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 A 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 A 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 A 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 A 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 A 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 A 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 A 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 A 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 A 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 A 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 A 307 THR ILE LYS MET GLU MET ALA VAL SEQRES 1 B 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 B 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 B 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 B 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 B 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 B 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 B 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 B 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 B 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 B 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 B 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 B 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 B 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 B 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 B 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 B 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 B 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 B 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 B 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 B 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 B 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 B 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 B 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 B 307 THR ILE LYS MET GLU MET ALA VAL HET UFP A 401 21 HET C2F A 402 33 HET UFP B 401 21 HET C2F B 402 66 HETNAM UFP 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM C2F 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID FORMUL 3 UFP 2(C9 H12 F N2 O8 P) FORMUL 4 C2F 2(C20 H25 N7 O6) FORMUL 7 HOH *661(H2 O) HELIX 1 AA1 GLY A 23 GLY A 38 1 16 HELIX 2 AA2 PHE A 74 LYS A 87 1 14 HELIX 3 AA3 ASN A 91 SER A 97 1 7 HELIX 4 AA4 ASP A 104 GLY A 107 5 4 HELIX 5 AA5 SER A 108 LEU A 115 1 8 HELIX 6 AA6 VAL A 128 PHE A 136 1 9 HELIX 7 AA7 ASP A 153 ASN A 165 1 13 HELIX 8 AA8 ASP A 180 MET A 184 5 5 HELIX 9 AA9 LEU A 215 GLY A 236 1 22 HELIX 10 AB1 HIS A 255 GLN A 264 1 10 HELIX 11 AB2 THR A 281 PHE A 285 5 5 HELIX 12 AB3 LYS A 286 GLU A 288 5 3 HELIX 13 AB4 GLY B 23 GLY B 38 1 16 HELIX 14 AB5 PHE B 74 LYS B 87 1 14 HELIX 15 AB6 ASN B 91 SER B 97 1 7 HELIX 16 AB7 TRP B 103 SER B 108 1 6 HELIX 17 AB8 SER B 108 LEU B 115 1 8 HELIX 18 AB9 VAL B 128 PHE B 136 1 9 HELIX 19 AC1 ASP B 153 ASN B 165 1 13 HELIX 20 AC2 ASP B 180 MET B 184 5 5 HELIX 21 AC3 LEU B 215 GLY B 236 1 22 HELIX 22 AC4 HIS B 255 GLN B 264 1 10 HELIX 23 AC5 THR B 281 PHE B 285 5 5 HELIX 24 AC6 LYS B 286 GLU B 288 5 3 SHEET 1 AA1 6 PHE A 39 LYS A 41 0 SHEET 2 AA1 6 THR A 49 SER A 60 -1 O SER A 51 N PHE A 39 SHEET 3 AA1 6 GLN A 238 TYR A 252 -1 O PHE A 242 N TYR A 59 SHEET 4 AA1 6 GLU A 201 ASP A 212 1 N CYS A 204 O VAL A 243 SHEET 5 AA1 6 HIS A 190 VAL A 198 -1 N LEU A 192 O TYR A 207 SHEET 6 AA1 6 ILE A 172 CYS A 174 -1 N MET A 173 O CYS A 193 SHEET 1 AA2 2 LYS A 272 ILE A 275 0 SHEET 2 AA2 2 PHE A 290 GLU A 293 -1 O GLU A 293 N LYS A 272 SHEET 1 AA3 6 PHE B 39 LYS B 41 0 SHEET 2 AA3 6 THR B 49 SER B 60 -1 O SER B 51 N PHE B 39 SHEET 3 AA3 6 GLN B 238 TYR B 252 -1 O PHE B 242 N TYR B 59 SHEET 4 AA3 6 GLU B 201 ASP B 212 1 N GLN B 208 O THR B 245 SHEET 5 AA3 6 HIS B 190 VAL B 198 -1 N LEU B 192 O TYR B 207 SHEET 6 AA3 6 ILE B 172 CYS B 174 -1 N MET B 173 O CYS B 193 SHEET 1 AA4 2 LYS B 272 ILE B 275 0 SHEET 2 AA4 2 PHE B 290 GLU B 293 -1 O GLU B 293 N LYS B 272 LINK SG CYS A 189 C6 UFP A 401 1555 1555 1.82 LINK SG CYS B 189 C6 UFP B 401 1555 1555 1.82 LINK C5 UFP B 401 C11AC2F B 402 1555 1555 1.55 LINK C5 UFP B 401 C11BC2F B 402 1555 1555 1.55 SITE 1 AC1 19 ARG A 44 TRP A 103 TYR A 129 CYS A 189 SITE 2 AC1 19 HIS A 190 GLN A 208 ARG A 209 SER A 210 SITE 3 AC1 19 GLY A 211 ASP A 212 ASN A 220 HIS A 250 SITE 4 AC1 19 TYR A 252 C2F A 402 HOH A 569 HOH A 675 SITE 5 AC1 19 HOH A 708 ARG B 169 ARG B 170 SITE 1 AC2 22 PHE A 74 ILE A 102 TRP A 103 ASN A 106 SITE 2 AC2 22 LEU A 186 ASP A 212 LEU A 215 GLY A 216 SITE 3 AC2 22 MET A 305 ALA A 306 UFP A 401 HOH A 506 SITE 4 AC2 22 HOH A 514 HOH A 558 HOH A 575 HOH A 590 SITE 5 AC2 22 HOH A 636 HOH A 644 HOH A 647 HOH A 667 SITE 6 AC2 22 HOH A 670 HOH A 701 SITE 1 AC3 41 ARG A 169 ARG A 170 ARG B 44 LYS B 71 SITE 2 AC3 41 ARG B 72 VAL B 73 PHE B 74 ILE B 102 SITE 3 AC3 41 TRP B 103 ASN B 106 TYR B 129 LEU B 186 SITE 4 AC3 41 CYS B 189 HIS B 190 GLN B 208 ARG B 209 SITE 5 AC3 41 SER B 210 GLY B 211 ASP B 212 LEU B 215 SITE 6 AC3 41 GLY B 216 PHE B 219 ASN B 220 HIS B 250 SITE 7 AC3 41 TYR B 252 ILE B 301 MET B 303 MET B 305 SITE 8 AC3 41 ALA B 306 HOH B 505 HOH B 512 HOH B 534 SITE 9 AC3 41 HOH B 561 HOH B 601 HOH B 608 HOH B 610 SITE 10 AC3 41 HOH B 616 HOH B 618 HOH B 619 HOH B 626 SITE 11 AC3 41 HOH B 672 SITE 1 AC4 41 ARG A 169 ARG A 170 ARG B 44 LYS B 71 SITE 2 AC4 41 ARG B 72 VAL B 73 PHE B 74 ILE B 102 SITE 3 AC4 41 TRP B 103 ASN B 106 TYR B 129 LEU B 186 SITE 4 AC4 41 CYS B 189 HIS B 190 GLN B 208 ARG B 209 SITE 5 AC4 41 SER B 210 GLY B 211 ASP B 212 LEU B 215 SITE 6 AC4 41 GLY B 216 PHE B 219 ASN B 220 HIS B 250 SITE 7 AC4 41 TYR B 252 ILE B 301 MET B 303 MET B 305 SITE 8 AC4 41 ALA B 306 HOH B 505 HOH B 512 HOH B 534 SITE 9 AC4 41 HOH B 561 HOH B 601 HOH B 608 HOH B 610 SITE 10 AC4 41 HOH B 616 HOH B 618 HOH B 619 HOH B 626 SITE 11 AC4 41 HOH B 672 SITE 1 AC5 21 ARG A 169 ARG A 170 ARG B 44 TRP B 103 SITE 2 AC5 21 TYR B 129 PRO B 187 PRO B 188 HIS B 190 SITE 3 AC5 21 ALA B 191 GLN B 208 ARG B 209 SER B 210 SITE 4 AC5 21 GLY B 211 ASP B 212 ASN B 220 HIS B 250 SITE 5 AC5 21 TYR B 252 C2F B 402 HOH B 601 HOH B 616 SITE 6 AC5 21 HOH B 672 CRYST1 54.224 83.302 68.850 90.00 105.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018442 0.000000 0.005089 0.00000 SCALE2 0.000000 0.012004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015067 0.00000