HEADER TRANSFERASE 16-DEC-15 5FDP TITLE STRUCTURE OF DDR1 RECEPTOR TYROSINE KINASE IN COMPLEX WITH D2099 TITLE 2 INHIBITOR AT 2.25 ANGSTROMS RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 601-903; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TRANSFERASE, DDR1 KINASE, INHIBITORS, STRUCTURAL GENOMICS, PSI- KEYWDS 2 BIOLOGY, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR S.G.BARTUAL,D.M.PINKAS,Z.WANG,K.DING,P.MAHAJAN,K.KUPINSKA, AUTHOR 2 S.MUKHOPADHYAY,C.STRAIN-DAMERELL,O.BORKOWSKA,R.TALON,J.KOPEC, AUTHOR 3 E.WILLIAMS,C.TALLANT,A.CHAIKUAD,F.SORELL,J.NEWMAN,N.BURGESS-BROWN, AUTHOR 4 C.H.ARROWSMITH,F.VON DELFT,A.M.EDWARDS,C.BOUNTRA,A.BULLOCK, AUTHOR 5 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 10-JAN-24 5FDP 1 REMARK REVDAT 3 24-JAN-18 5FDP 1 AUTHOR REVDAT 2 06-JUL-16 5FDP 1 JRNL REVDAT 1 08-JUN-16 5FDP 0 JRNL AUTH Z.WANG,H.BIAN,S.G.BARTUAL,W.DU,J.LUO,H.ZHAO,S.ZHANG,C.MO, JRNL AUTH 2 Y.ZHOU,Y.XU,Z.TU,X.REN,X.LU,R.A.BREKKEN,L.YAO,A.N.BULLOCK, JRNL AUTH 3 J.SU,K.DING JRNL TITL STRUCTURE-BASED DESIGN OF JRNL TITL 2 TETRAHYDROISOQUINOLINE-7-CARBOXAMIDES AS SELECTIVE DISCOIDIN JRNL TITL 3 DOMAIN RECEPTOR 1 (DDR1) INHIBITORS. JRNL REF J.MED.CHEM. V. 59 5911 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27219676 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00140 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 783 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2705 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2101 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2566 REMARK 3 BIN R VALUE (WORKING SET) : 0.2051 REMARK 3 BIN FREE R VALUE : 0.3001 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 139 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.43300 REMARK 3 B22 (A**2) : 4.42300 REMARK 3 B33 (A**2) : 3.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.266 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.394 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.262 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.307 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.249 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2382 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3216 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 829 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 57 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 341 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2382 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 293 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2892 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.04 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.21 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 41.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.34400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CKR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 3350, 10% REMARK 280 ETHYLENE GLYCOL, 0.1M BIS-TRIS PROPANE PH 6.5, 0.2M SODIUM REMARK 280 ACETATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 577 REMARK 465 GLY A 578 REMARK 465 HIS A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 465 HIS A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 465 SER A 585 REMARK 465 SER A 586 REMARK 465 GLY A 587 REMARK 465 VAL A 588 REMARK 465 ASP A 589 REMARK 465 LEU A 590 REMARK 465 GLY A 591 REMARK 465 THR A 592 REMARK 465 GLU A 593 REMARK 465 ASN A 594 REMARK 465 LEU A 595 REMARK 465 TYR A 596 REMARK 465 PHE A 597 REMARK 465 GLN A 598 REMARK 465 SER A 599 REMARK 465 MET A 600 REMARK 465 PRO A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 465 LEU A 635 REMARK 465 VAL A 636 REMARK 465 SER A 637 REMARK 465 LEU A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 PRO A 641 REMARK 465 LEU A 642 REMARK 465 ASN A 643 REMARK 465 VAL A 644 REMARK 465 ARG A 645 REMARK 465 LYS A 646 REMARK 465 GLY A 647 REMARK 465 GLU A 724 REMARK 465 GLY A 725 REMARK 465 ALA A 726 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 ASP A 729 REMARK 465 GLY A 730 REMARK 465 GLN A 731 REMARK 465 ALA A 732 REMARK 465 ALA A 733 REMARK 465 GLN A 734 REMARK 465 VAL A 913 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 613 CE NZ REMARK 470 GLU A 614 CD OE1 OE2 REMARK 470 GLU A 618 OE1 OE2 REMARK 470 GLN A 620 CG CD OE1 NE2 REMARK 470 LYS A 663 CD CE NZ REMARK 470 ASP A 694 CG OD1 OD2 REMARK 470 ARG A 802 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 613 -58.22 -125.26 REMARK 500 ARG A 765 -15.81 79.54 REMARK 500 ASP A 766 44.79 -142.06 REMARK 500 ALA A 783 -169.55 -127.10 REMARK 500 LEU A 910 59.05 -97.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1357 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1358 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1359 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1360 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A1361 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A1363 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A1364 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A1365 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A1366 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH A1367 DISTANCE = 8.49 ANGSTROMS REMARK 525 HOH A1368 DISTANCE = 8.70 ANGSTROMS REMARK 525 HOH A1369 DISTANCE = 8.81 ANGSTROMS REMARK 525 HOH A1370 DISTANCE = 9.09 ANGSTROMS REMARK 525 HOH A1371 DISTANCE = 10.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5WR A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1007 DBREF 5FDP A 601 913 UNP Q08345 DDR1_HUMAN 601 913 SEQADV 5FDP MET A 577 UNP Q08345 INITIATING METHIONINE SEQADV 5FDP GLY A 578 UNP Q08345 EXPRESSION TAG SEQADV 5FDP HIS A 579 UNP Q08345 EXPRESSION TAG SEQADV 5FDP HIS A 580 UNP Q08345 EXPRESSION TAG SEQADV 5FDP HIS A 581 UNP Q08345 EXPRESSION TAG SEQADV 5FDP HIS A 582 UNP Q08345 EXPRESSION TAG SEQADV 5FDP HIS A 583 UNP Q08345 EXPRESSION TAG SEQADV 5FDP HIS A 584 UNP Q08345 EXPRESSION TAG SEQADV 5FDP SER A 585 UNP Q08345 EXPRESSION TAG SEQADV 5FDP SER A 586 UNP Q08345 EXPRESSION TAG SEQADV 5FDP GLY A 587 UNP Q08345 EXPRESSION TAG SEQADV 5FDP VAL A 588 UNP Q08345 EXPRESSION TAG SEQADV 5FDP ASP A 589 UNP Q08345 EXPRESSION TAG SEQADV 5FDP LEU A 590 UNP Q08345 EXPRESSION TAG SEQADV 5FDP GLY A 591 UNP Q08345 EXPRESSION TAG SEQADV 5FDP THR A 592 UNP Q08345 EXPRESSION TAG SEQADV 5FDP GLU A 593 UNP Q08345 EXPRESSION TAG SEQADV 5FDP ASN A 594 UNP Q08345 EXPRESSION TAG SEQADV 5FDP LEU A 595 UNP Q08345 EXPRESSION TAG SEQADV 5FDP TYR A 596 UNP Q08345 EXPRESSION TAG SEQADV 5FDP PHE A 597 UNP Q08345 EXPRESSION TAG SEQADV 5FDP GLN A 598 UNP Q08345 EXPRESSION TAG SEQADV 5FDP SER A 599 UNP Q08345 EXPRESSION TAG SEQADV 5FDP MET A 600 UNP Q08345 EXPRESSION TAG SEQRES 1 A 337 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP SEQRES 2 A 337 LEU GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO ARG SEQRES 3 A 337 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 4 A 337 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 5 A 337 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 6 A 337 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 7 A 337 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 8 A 337 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 9 A 337 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 10 A 337 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 11 A 337 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 12 A 337 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 13 A 337 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 14 A 337 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 15 A 337 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 16 A 337 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 17 A 337 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 18 A 337 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 19 A 337 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 20 A 337 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 21 A 337 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 22 A 337 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 23 A 337 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 24 A 337 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 25 A 337 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 26 A 337 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL HET 5WR A1001 38 HET PEG A1002 7 HET EDO A1003 4 HET EDO A1004 4 HET EDO A1005 4 HET EDO A1006 4 HET EDO A1007 4 HETNAM 5WR (4~{S})-4-METHYL-~{N}-[3-[(4-METHYLPIPERAZIN-1-YL) HETNAM 2 5WR METHYL]-5-(TRIFLUOROMETHYL)PHENYL]-2-PYRIMIDIN-5-YL-3, HETNAM 3 5WR 4-DIHYDRO-1~{H}-ISOQUINOLINE-7-CARBOXAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 5WR C28 H31 F3 N6 O FORMUL 3 PEG C4 H10 O3 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *271(H2 O) HELIX 1 AA1 PRO A 606 LEU A 610 5 5 HELIX 2 AA2 THR A 662 SER A 677 1 16 HELIX 3 AA3 ASP A 708 ALA A 715 1 8 HELIX 4 AA4 SER A 739 LEU A 760 1 22 HELIX 5 AA5 ALA A 768 ARG A 770 5 3 HELIX 6 AA6 GLU A 776 PHE A 778 5 3 HELIX 7 AA7 ARG A 789 TYR A 796 5 8 HELIX 8 AA8 PRO A 806 MET A 810 5 5 HELIX 9 AA9 ALA A 811 GLY A 818 1 8 HELIX 10 AB1 THR A 821 MET A 838 1 18 HELIX 11 AB2 THR A 849 ASP A 863 1 15 HELIX 12 AB3 PRO A 877 CYS A 887 1 11 HELIX 13 AB4 GLU A 891 ARG A 895 5 5 HELIX 14 AB5 PRO A 897 ASP A 908 1 12 SHEET 1 AA1 5 ARG A 611 GLU A 618 0 SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O LEU A 626 N GLU A 614 SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O ILE A 656 N GLU A 623 SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O THR A 701 N ALA A 653 SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 737 ILE A 738 1 O ILE A 738 N GLN A 717 SHEET 1 AA3 2 CYS A 772 VAL A 774 0 SHEET 2 AA3 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773 SHEET 1 AA4 2 TYR A 797 ARG A 798 0 SHEET 2 AA4 2 VAL A 804 LEU A 805 -1 O LEU A 805 N TYR A 797 CISPEP 1 ASP A 695 PRO A 696 0 -4.11 SITE 1 AC1 16 ALA A 653 LYS A 655 GLU A 672 MET A 676 SITE 2 AC1 16 LEU A 679 ILE A 685 MET A 699 THR A 701 SITE 3 AC1 16 ASP A 702 TYR A 703 MET A 704 PHE A 762 SITE 4 AC1 16 HIS A 764 ALA A 783 ASP A 784 HOH A1190 SITE 1 AC2 8 ASN A 710 ALA A 768 THR A 769 ARG A 770 SITE 2 AC2 8 ASP A 795 TRP A 809 GLU A 835 ALA A 842 SITE 1 AC3 3 MET A 817 GLY A 818 ARG A 841 SITE 1 AC4 4 HIS A 745 ALA A 748 HIS A 902 HOH A1110 SITE 1 AC5 2 ARG A 890 SER A 892 SITE 1 AC6 5 TRP A 827 PHE A 845 TYR A 869 LEU A 870 SITE 2 AC6 5 TRP A 888 SITE 1 AC7 4 ALA A 758 THR A 759 PRO A 897 PHE A 898 CRYST1 45.300 63.150 107.670 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009288 0.00000