HEADER SIGNALING PROTEIN 16-DEC-15 5FE8 TITLE CRYSTAL STRUCTURE OF HUMAN PCAF BROMODOMAIN IN COMPLEX WITH COMPOUND TITLE 2 SL1126 (COMPOUND 12) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE KAT2B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PCAF BROMODOMAIN, UNP RESIDUES 715-831; COMPND 5 SYNONYM: HISTONE ACETYLTRANSFERASE PCAF,HISTONE ACETYLASE PCAF,LYSINE COMPND 6 ACETYLTRANSFERASE 2B,P300/CBP-ASSOCIATED FACTOR,P/CAF; COMPND 7 EC: 2.3.1.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAT2B, PCAF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SIGNALING PROTEIN, BROMODOMAIN, HISTONE ACETYLTRANSFERASE KAT2B, KEYWDS 2 HISTONE, ACETYLATION, ACETYLLYSINE, EPIGENETICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM (SGC) EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,S.KNAPP, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 10-JAN-24 5FE8 1 REMARK REVDAT 2 30-MAR-16 5FE8 1 JRNL REVDAT 1 13-JAN-16 5FE8 0 JRNL AUTH A.CHAIKUAD,S.LANG,P.E.BRENNAN,C.TEMPERINI,O.FEDOROV, JRNL AUTH 2 J.HOLLANDER,R.NACHANE,C.ABELL,S.MULLER,G.SIEGAL,S.KNAPP JRNL TITL STRUCTURE-BASED IDENTIFICATION OF INHIBITORY FRAGMENTS JRNL TITL 2 TARGETING THE P300/CBP-ASSOCIATED FACTOR BROMODOMAIN. JRNL REF J.MED.CHEM. V. 59 1648 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26731131 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01719 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1916 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1841 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2568 ; 1.498 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4259 ; 1.365 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 5.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;39.137 ;23.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;14.635 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2078 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 868 ; 1.231 ; 2.384 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 867 ; 1.208 ; 2.381 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1083 ; 1.940 ; 3.561 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1084 ; 1.940 ; 3.564 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 1.678 ; 2.725 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1049 ; 1.677 ; 2.728 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1483 ; 2.680 ; 3.945 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2462 ; 7.142 ;21.764 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2463 ; 7.141 ;21.781 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 724 831 B 724 831 12064 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 724 A 754 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3844 6.7728 89.4655 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.1779 REMARK 3 T33: 0.0837 T12: 0.0342 REMARK 3 T13: -0.0063 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 6.8335 L22: 3.1439 REMARK 3 L33: 4.8070 L12: 0.3160 REMARK 3 L13: -2.0506 L23: 0.5986 REMARK 3 S TENSOR REMARK 3 S11: 0.1527 S12: 1.0031 S13: 0.0516 REMARK 3 S21: -0.1803 S22: 0.0307 S23: -0.2065 REMARK 3 S31: 0.0290 S32: -0.3169 S33: -0.1834 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 755 A 806 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1834 13.3081 96.0924 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0508 REMARK 3 T33: 0.0667 T12: 0.0133 REMARK 3 T13: -0.0083 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.0205 L22: 3.6658 REMARK 3 L33: 6.7143 L12: 1.2319 REMARK 3 L13: -1.9246 L23: -1.8019 REMARK 3 S TENSOR REMARK 3 S11: 0.2806 S12: 0.2414 S13: 0.2513 REMARK 3 S21: 0.2466 S22: -0.1936 S23: -0.0335 REMARK 3 S31: -0.2893 S32: -0.1578 S33: -0.0870 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 807 A 831 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8290 4.4739 98.9831 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0674 REMARK 3 T33: 0.1133 T12: 0.0427 REMARK 3 T13: -0.0778 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 9.5106 L22: 5.9148 REMARK 3 L33: 6.8761 L12: 1.4353 REMARK 3 L13: -2.3242 L23: -2.1056 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.2840 S13: -0.1760 REMARK 3 S21: 0.0011 S22: -0.1575 S23: -0.4759 REMARK 3 S31: 0.1162 S32: 0.4749 S33: 0.0956 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 724 B 729 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8818 29.0848 121.5803 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.1502 REMARK 3 T33: 0.1877 T12: 0.0425 REMARK 3 T13: 0.0188 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 15.8873 L22: 3.1007 REMARK 3 L33: 7.4073 L12: 0.6251 REMARK 3 L13: -3.6232 L23: 1.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.0064 S13: 0.6778 REMARK 3 S21: 0.2731 S22: -0.2945 S23: 0.3788 REMARK 3 S31: -0.2998 S32: -0.5690 S33: 0.2135 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 730 B 754 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2306 15.3827 119.3941 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.0776 REMARK 3 T33: 0.0970 T12: -0.0756 REMARK 3 T13: -0.1227 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 6.2485 L22: 7.1649 REMARK 3 L33: 4.1506 L12: -2.3761 REMARK 3 L13: -0.5239 L23: 0.5728 REMARK 3 S TENSOR REMARK 3 S11: 0.3598 S12: -0.5496 S13: 0.1270 REMARK 3 S21: 0.7959 S22: -0.0978 S23: -0.3199 REMARK 3 S31: -0.0424 S32: 0.2664 S33: -0.2621 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 755 B 831 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1440 15.8636 111.5901 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.0719 REMARK 3 T33: 0.0823 T12: 0.0148 REMARK 3 T13: -0.0762 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.9569 L22: 6.6677 REMARK 3 L33: 3.9569 L12: 0.1081 REMARK 3 L13: 0.2481 L23: 1.1786 REMARK 3 S TENSOR REMARK 3 S11: 0.1583 S12: 0.2269 S13: 0.0170 REMARK 3 S21: 0.1237 S22: -0.0896 S23: -0.2065 REMARK 3 S31: -0.0924 S32: -0.0748 S33: -0.0687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54165 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 3GG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21-35% PEG 3350, 0.1 M BIS-TRIS PH 5.5 REMARK 280 -7.0 OR 21-40% MEDIUM-MOLECULAR-WEIGHT PEG SMEARS (MMW PEG REMARK 280 SMEARS) BUFFERED EITHER WITH 0.1 M BIS-TRIS PH 6.0-7.5 OR 0.1 M REMARK 280 TRIS PH 7.5-8.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.83500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.77225 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.20833 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 49.83500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.77225 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.20833 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 49.83500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.77225 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.20833 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.54450 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.41667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.54450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.41667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.54450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 713 REMARK 465 MET A 714 REMARK 465 GLY A 715 REMARK 465 LYS A 716 REMARK 465 GLU A 717 REMARK 465 LYS A 718 REMARK 465 SER A 719 REMARK 465 LYS A 720 REMARK 465 GLU A 721 REMARK 465 PRO A 722 REMARK 465 ARG A 723 REMARK 465 SER B 713 REMARK 465 MET B 714 REMARK 465 GLY B 715 REMARK 465 LYS B 716 REMARK 465 GLU B 717 REMARK 465 LYS B 718 REMARK 465 SER B 719 REMARK 465 LYS B 720 REMARK 465 GLU B 721 REMARK 465 PRO B 722 REMARK 465 ARG B 723 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 724 CG OD1 OD2 REMARK 470 ASP B 724 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 780 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 757 71.81 -150.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1112 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1122 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5WT A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 905 DBREF 5FE8 A 715 831 UNP Q92831 KAT2B_HUMAN 715 831 DBREF 5FE8 B 715 831 UNP Q92831 KAT2B_HUMAN 715 831 SEQADV 5FE8 SER A 713 UNP Q92831 EXPRESSION TAG SEQADV 5FE8 MET A 714 UNP Q92831 EXPRESSION TAG SEQADV 5FE8 SER B 713 UNP Q92831 EXPRESSION TAG SEQADV 5FE8 MET B 714 UNP Q92831 EXPRESSION TAG SEQRES 1 A 119 SER MET GLY LYS GLU LYS SER LYS GLU PRO ARG ASP PRO SEQRES 2 A 119 ASP GLN LEU TYR SER THR LEU LYS SER ILE LEU GLN GLN SEQRES 3 A 119 VAL LYS SER HIS GLN SER ALA TRP PRO PHE MET GLU PRO SEQRES 4 A 119 VAL LYS ARG THR GLU ALA PRO GLY TYR TYR GLU VAL ILE SEQRES 5 A 119 ARG PHE PRO MET ASP LEU LYS THR MET SER GLU ARG LEU SEQRES 6 A 119 LYS ASN ARG TYR TYR VAL SER LYS LYS LEU PHE MET ALA SEQRES 7 A 119 ASP LEU GLN ARG VAL PHE THR ASN CYS LYS GLU TYR ASN SEQRES 8 A 119 PRO PRO GLU SER GLU TYR TYR LYS CYS ALA ASN ILE LEU SEQRES 9 A 119 GLU LYS PHE PHE PHE SER LYS ILE LYS GLU ALA GLY LEU SEQRES 10 A 119 ILE ASP SEQRES 1 B 119 SER MET GLY LYS GLU LYS SER LYS GLU PRO ARG ASP PRO SEQRES 2 B 119 ASP GLN LEU TYR SER THR LEU LYS SER ILE LEU GLN GLN SEQRES 3 B 119 VAL LYS SER HIS GLN SER ALA TRP PRO PHE MET GLU PRO SEQRES 4 B 119 VAL LYS ARG THR GLU ALA PRO GLY TYR TYR GLU VAL ILE SEQRES 5 B 119 ARG PHE PRO MET ASP LEU LYS THR MET SER GLU ARG LEU SEQRES 6 B 119 LYS ASN ARG TYR TYR VAL SER LYS LYS LEU PHE MET ALA SEQRES 7 B 119 ASP LEU GLN ARG VAL PHE THR ASN CYS LYS GLU TYR ASN SEQRES 8 B 119 PRO PRO GLU SER GLU TYR TYR LYS CYS ALA ASN ILE LEU SEQRES 9 B 119 GLU LYS PHE PHE PHE SER LYS ILE LYS GLU ALA GLY LEU SEQRES 10 B 119 ILE ASP HET 5WT A 901 17 HET EDO A 902 4 HET EDO A 903 4 HET EDO A 904 4 HET EDO A 905 4 HET EDO B 901 4 HET EDO B 902 4 HET EDO B 903 4 HET EDO B 904 4 HET DMS B 905 4 HETNAM 5WT ~{N}-(1,4-DIMETHYL-2-OXIDANYLIDENE-QUINOLIN-7-YL) HETNAM 2 5WT ETHANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 5WT C13 H14 N2 O2 FORMUL 4 EDO 8(C2 H6 O2) FORMUL 12 DMS C2 H6 O S FORMUL 13 HOH *234(H2 O) HELIX 1 AA1 ASP A 724 HIS A 742 1 19 HELIX 2 AA2 GLN A 743 MET A 749 5 7 HELIX 3 AA3 GLY A 759 ILE A 764 1 6 HELIX 4 AA4 ASP A 769 ASN A 779 1 11 HELIX 5 AA5 SER A 784 ASN A 803 1 20 HELIX 6 AA6 SER A 807 ALA A 827 1 21 HELIX 7 AA7 PRO B 725 HIS B 742 1 18 HELIX 8 AA8 GLN B 743 MET B 749 5 7 HELIX 9 AA9 GLY B 759 ILE B 764 1 6 HELIX 10 AB1 ASP B 769 ASN B 779 1 11 HELIX 11 AB2 SER B 784 ASN B 803 1 20 HELIX 12 AB3 SER B 807 ALA B 827 1 21 SITE 1 AC1 7 PRO A 747 THR A 755 GLU A 756 ASN A 803 SITE 2 AC1 7 TYR A 809 HOH A1005 HOH A1045 SITE 1 AC2 3 TYR A 761 HOH A1012 EDO B 901 SITE 1 AC3 3 ILE A 830 HOH A1031 HOH A1034 SITE 1 AC4 2 HOH A1030 HOH A1052 SITE 1 AC5 5 SER A 734 GLN A 738 LYS A 823 GLU A 826 SITE 2 AC5 5 ALA A 827 SITE 1 AC6 4 EDO A 902 LYS B 771 SER B 774 HOH B1069 SITE 1 AC7 2 ARG B 776 EDO B 904 SITE 1 AC8 3 GLN B 727 LEU B 728 THR B 731 SITE 1 AC9 5 GLU A 775 ASN A 779 ARG B 776 ASN B 779 SITE 2 AC9 5 EDO B 902 SITE 1 AD1 3 PRO B 747 ASN B 803 HOH B1010 CRYST1 99.670 99.670 99.625 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010033 0.005793 0.000000 0.00000 SCALE2 0.000000 0.011585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010038 0.00000