HEADER LIGASE 19-DEC-15 5FG0 TITLE STRUCTURE OF THE CONSERVED YEAST LISTERIN (LTN1) N-TERMINAL DOMAIN, TITLE 2 MONOCLINIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE LISTERIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RING DOMAIN MUTANT KILLED BY RTF1 DELETION PROTEIN 1; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: RKR1, LTN1, YMR247C, YM9408.09C, YM9920.01C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VARIANT: CODON PLUS RIL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS UBIQUITIN LIGASE, PROTEIN QUALITY CONTROL, RIBOSOME, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.DOAMEKPOR,C.D.LIMA REVDAT 6 06-MAR-24 5FG0 1 LINK REVDAT 5 20-NOV-19 5FG0 1 REMARK REVDAT 4 20-SEP-17 5FG0 1 JRNL REMARK REVDAT 3 03-AUG-16 5FG0 1 JRNL REVDAT 2 20-JUL-16 5FG0 1 JRNL REVDAT 1 06-JUL-16 5FG0 0 JRNL AUTH S.K.DOAMEKPOR,J.W.LEE,N.L.HEPOWIT,C.WU,C.CHARENTON, JRNL AUTH 2 M.LEONARD,M.H.BENGTSON,K.R.RAJASHANKAR,M.S.SACHS,C.D.LIMA, JRNL AUTH 3 C.A.JOAZEIRO JRNL TITL STRUCTURE AND FUNCTION OF THE YEAST LISTERIN (LTN1) JRNL TITL 2 CONSERVED N-TERMINAL DOMAIN IN BINDING TO STALLED 60S JRNL TITL 3 RIBOSOMAL SUBUNITS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E4151 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27385828 JRNL DOI 10.1073/PNAS.1605951113 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1951 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 46411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3571 - 5.6599 0.98 3520 152 0.1510 0.1897 REMARK 3 2 5.6599 - 4.4935 0.99 3497 154 0.1473 0.1654 REMARK 3 3 4.4935 - 3.9258 0.98 3462 141 0.1456 0.1718 REMARK 3 4 3.9258 - 3.5670 0.99 3475 147 0.1661 0.2111 REMARK 3 5 3.5670 - 3.3114 0.99 3447 148 0.1908 0.2365 REMARK 3 6 3.3114 - 3.1162 0.99 3461 146 0.2101 0.2290 REMARK 3 7 3.1162 - 2.9601 0.98 3402 147 0.2103 0.2584 REMARK 3 8 2.9601 - 2.8313 0.99 3486 144 0.2100 0.2604 REMARK 3 9 2.8313 - 2.7223 0.99 3421 145 0.2189 0.2747 REMARK 3 10 2.7223 - 2.6284 0.99 3451 147 0.2170 0.2647 REMARK 3 11 2.6284 - 2.5462 0.98 3414 138 0.2142 0.2656 REMARK 3 12 2.5462 - 2.4734 0.98 3413 142 0.2316 0.2637 REMARK 3 13 2.4734 - 2.4083 0.88 3082 129 0.2466 0.3003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6740 REMARK 3 ANGLE : 0.608 9099 REMARK 3 CHIRALITY : 0.030 1050 REMARK 3 PLANARITY : 0.003 1130 REMARK 3 DIHEDRAL : 10.111 2494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 204.3919 43.1657 18.2949 REMARK 3 T TENSOR REMARK 3 T11: 0.5511 T22: 0.2665 REMARK 3 T33: 0.2849 T12: 0.0282 REMARK 3 T13: -0.0299 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.8179 L22: 2.5064 REMARK 3 L33: 1.6631 L12: 0.9755 REMARK 3 L13: -0.8187 L23: -0.2334 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.0952 S13: 0.0381 REMARK 3 S21: -0.7195 S22: -0.1965 S23: -0.0364 REMARK 3 S31: -0.2558 S32: 0.1052 S33: -0.0379 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 176.4869 35.8819 42.4506 REMARK 3 T TENSOR REMARK 3 T11: 0.2866 T22: 0.3523 REMARK 3 T33: 0.3617 T12: 0.0147 REMARK 3 T13: -0.0179 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.5867 L22: 0.9060 REMARK 3 L33: 1.0130 L12: -0.2035 REMARK 3 L13: -0.9034 L23: -0.0386 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: -0.0312 S13: 0.0445 REMARK 3 S21: 0.0102 S22: 0.0645 S23: 0.1806 REMARK 3 S31: -0.0740 S32: -0.2036 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 204.7905 6.2064 12.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.3792 T22: 0.3069 REMARK 3 T33: 0.2848 T12: 0.0146 REMARK 3 T13: 0.0485 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.9197 L22: 2.1028 REMARK 3 L33: 2.4595 L12: -0.2997 REMARK 3 L13: -0.3624 L23: -0.2691 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.1474 S13: 0.0608 REMARK 3 S21: -0.3269 S22: -0.0988 S23: -0.2408 REMARK 3 S31: -0.0753 S32: 0.1335 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 178.8208 -4.3485 36.9301 REMARK 3 T TENSOR REMARK 3 T11: 0.2796 T22: 0.2985 REMARK 3 T33: 0.3288 T12: 0.0044 REMARK 3 T13: -0.0250 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.8433 L22: 0.8815 REMARK 3 L33: 0.9074 L12: 0.4399 REMARK 3 L13: -0.9614 L23: -0.3487 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.0059 S13: -0.0385 REMARK 3 S21: 0.0090 S22: 0.0229 S23: 0.0759 REMARK 3 S31: 0.1228 S32: -0.1707 S33: 0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46438 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% (W/V) PEG8000, 0.1 M POTASSIUM REMARK 280 CHLORIDE, AND 2.5% (V/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.17600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 ASN A 13 REMARK 465 VAL A 421 REMARK 465 LYS A 422 REMARK 465 LYS A 423 REMARK 465 MET A 424 REMARK 465 SER B 11 REMARK 465 LEU B 12 REMARK 465 ASN B 13 REMARK 465 VAL B 421 REMARK 465 LYS B 422 REMARK 465 LYS B 423 REMARK 465 MET B 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 254 CG OD1 ND2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 PHE A 393 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 396 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 420 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 43 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 81 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 256 CG CD OE1 NE2 REMARK 470 LYS B 391 CG CD CE NZ REMARK 470 PHE B 393 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 396 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 420 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 15 O HOH B 601 2.03 REMARK 500 O SER A 234 O HOH A 601 2.15 REMARK 500 ND2 ASN A 257 OD1 ASN A 259 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 40.32 -150.26 REMARK 500 ASP A 58 107.26 -54.27 REMARK 500 GLU A 80 -43.57 -149.22 REMARK 500 LYS A 123 -52.16 70.33 REMARK 500 PHE A 159 60.36 -117.70 REMARK 500 LYS A 253 -72.95 -62.66 REMARK 500 ASN A 254 163.33 174.67 REMARK 500 ASN A 257 -169.96 -74.22 REMARK 500 GLU A 376 -47.68 -132.67 REMARK 500 LYS A 391 -63.22 -90.53 REMARK 500 SER A 417 -70.92 -54.71 REMARK 500 ASN B 28 -175.02 -66.71 REMARK 500 LEU B 121 58.71 -92.05 REMARK 500 LYS B 123 -25.51 69.93 REMARK 500 PHE B 159 56.40 -115.05 REMARK 500 ASP B 228 44.17 -106.29 REMARK 500 ASN B 257 -166.56 -112.21 REMARK 500 SER B 349 68.90 -151.94 REMARK 500 GLU B 376 -48.83 -133.67 REMARK 500 PHE B 393 37.78 -90.74 REMARK 500 ASN B 397 56.30 -97.46 REMARK 500 GLU B 419 -169.36 -69.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 185 O REMARK 620 2 GLU A 188 O 96.9 REMARK 620 3 TYR A 208 OH 83.0 74.0 REMARK 620 4 SER A 245 OG 72.5 166.0 95.3 REMARK 620 5 HOH A 648 O 72.2 104.0 154.8 81.8 REMARK 620 6 HOH A 675 O 150.8 106.1 86.3 81.6 117.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 185 O REMARK 620 2 GLU B 188 O 90.6 REMARK 620 3 TYR B 208 OH 77.1 73.9 REMARK 620 4 SER B 245 OG 77.0 160.7 88.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FG1 RELATED DB: PDB DBREF 5FG0 A 13 424 UNP Q04781 LTN1_YEAST 13 424 DBREF 5FG0 B 13 424 UNP Q04781 LTN1_YEAST 13 424 SEQADV 5FG0 SER A 11 UNP Q04781 EXPRESSION TAG SEQADV 5FG0 LEU A 12 UNP Q04781 EXPRESSION TAG SEQADV 5FG0 SER B 11 UNP Q04781 EXPRESSION TAG SEQADV 5FG0 LEU B 12 UNP Q04781 EXPRESSION TAG SEQRES 1 A 414 SER LEU ASN THR ASP LEU GLY LEU GLY HIS ASN GLY VAL SEQRES 2 A 414 ARG ILE SER LEU ASN TYR PHE ASP GLY LEU PRO ASP PRO SEQRES 3 A 414 SER LEU LEU ASN SER LEU TYR SER ASN GLU LEU LYS LEU SEQRES 4 A 414 ILE PHE LYS SER LEU LEU LYS ARG ASP GLU THR THR LYS SEQRES 5 A 414 GLU LYS ALA LEU MET ASP LEU SER ASN LEU ILE SER ASP SEQRES 6 A 414 PHE ASN GLN ASN GLU TYR PHE PHE ASN ASP ILE PHE LEU SEQRES 7 A 414 LEU CYS TRP SER GLN ILE TYR ALA LYS LEU ILE ILE SER SEQRES 8 A 414 ASP TYR LYS VAL ILE ARG LEU GLN SER HIS GLN ILE THR SEQRES 9 A 414 ILE MET LEU VAL LYS SER LEU ARG LYS LYS ILE SER LYS SEQRES 10 A 414 PHE LEU LYS ASP PHE ILE PRO LEU ILE LEU LEU GLY THR SEQRES 11 A 414 CYS GLU LEU ASP TYR SER VAL SER LYS PRO SER LEU ASN SEQRES 12 A 414 GLU LEU THR GLU CYS PHE ASN LYS ASP PRO ALA LYS ILE SEQRES 13 A 414 ASN ALA LEU TRP ALA VAL PHE GLN GLU GLN LEU LEU ASN SEQRES 14 A 414 LEU VAL LYS GLU ILE VAL VAL ASN GLU ASN GLU ASP THR SEQRES 15 A 414 ILE SER ASP GLU ARG TYR SER SER LYS GLU GLU SER GLU SEQRES 16 A 414 PHE ARG TYR HIS ARG VAL ILE ALA SER ALA VAL LEU LEU SEQRES 17 A 414 LEU ILE LYS LEU PHE VAL HIS ASN LYS ASP VAL SER GLU SEQRES 18 A 414 ARG ASN SER SER SER LEU LYS VAL ILE LEU SER ASP GLU SEQRES 19 A 414 SER ILE TRP LYS LEU LEU ASN LEU LYS ASN GLY GLN ASN SEQRES 20 A 414 THR ASN ALA TYR GLU THR VAL LEU ARG LEU ILE ASP VAL SEQRES 21 A 414 LEU TYR THR ARG GLY TYR MET PRO SER HIS LYS ASN ILE SEQRES 22 A 414 MET LYS LEU ALA VAL LYS LYS LEU LEU LYS SER LEU THR SEQRES 23 A 414 HIS ILE THR SER LYS ASN ILE LEU LYS VAL CYS PRO VAL SEQRES 24 A 414 LEU PRO SER ILE LEU ASN LEU LEU ALA THR LEU ASP ASP SEQRES 25 A 414 TYR GLU ASP GLY THR ILE TRP SER TYR ASP LYS SER SER SEQRES 26 A 414 LYS GLU LYS VAL LEU LYS PHE LEU SER VAL SER ARG THR SEQRES 27 A 414 SER PRO SER PRO GLY PHE PHE ASN ALA VAL PHE ALA LEU SEQRES 28 A 414 TYR SER SER THR LYS ARG HIS SER PHE LEU ASP TYR TYR SEQRES 29 A 414 LEU GLU TRP LEU PRO PHE TRP GLN LYS SER VAL GLN ARG SEQRES 30 A 414 LEU ASN GLU LYS GLY PHE SER ALA ARG ASN SER ALA GLU SEQRES 31 A 414 VAL LEU ASN GLU PHE TRP THR ASN PHE LEU LYS PHE ALA SEQRES 32 A 414 GLU ASP SER SER GLU GLU ARG VAL LYS LYS MET SEQRES 1 B 414 SER LEU ASN THR ASP LEU GLY LEU GLY HIS ASN GLY VAL SEQRES 2 B 414 ARG ILE SER LEU ASN TYR PHE ASP GLY LEU PRO ASP PRO SEQRES 3 B 414 SER LEU LEU ASN SER LEU TYR SER ASN GLU LEU LYS LEU SEQRES 4 B 414 ILE PHE LYS SER LEU LEU LYS ARG ASP GLU THR THR LYS SEQRES 5 B 414 GLU LYS ALA LEU MET ASP LEU SER ASN LEU ILE SER ASP SEQRES 6 B 414 PHE ASN GLN ASN GLU TYR PHE PHE ASN ASP ILE PHE LEU SEQRES 7 B 414 LEU CYS TRP SER GLN ILE TYR ALA LYS LEU ILE ILE SER SEQRES 8 B 414 ASP TYR LYS VAL ILE ARG LEU GLN SER HIS GLN ILE THR SEQRES 9 B 414 ILE MET LEU VAL LYS SER LEU ARG LYS LYS ILE SER LYS SEQRES 10 B 414 PHE LEU LYS ASP PHE ILE PRO LEU ILE LEU LEU GLY THR SEQRES 11 B 414 CYS GLU LEU ASP TYR SER VAL SER LYS PRO SER LEU ASN SEQRES 12 B 414 GLU LEU THR GLU CYS PHE ASN LYS ASP PRO ALA LYS ILE SEQRES 13 B 414 ASN ALA LEU TRP ALA VAL PHE GLN GLU GLN LEU LEU ASN SEQRES 14 B 414 LEU VAL LYS GLU ILE VAL VAL ASN GLU ASN GLU ASP THR SEQRES 15 B 414 ILE SER ASP GLU ARG TYR SER SER LYS GLU GLU SER GLU SEQRES 16 B 414 PHE ARG TYR HIS ARG VAL ILE ALA SER ALA VAL LEU LEU SEQRES 17 B 414 LEU ILE LYS LEU PHE VAL HIS ASN LYS ASP VAL SER GLU SEQRES 18 B 414 ARG ASN SER SER SER LEU LYS VAL ILE LEU SER ASP GLU SEQRES 19 B 414 SER ILE TRP LYS LEU LEU ASN LEU LYS ASN GLY GLN ASN SEQRES 20 B 414 THR ASN ALA TYR GLU THR VAL LEU ARG LEU ILE ASP VAL SEQRES 21 B 414 LEU TYR THR ARG GLY TYR MET PRO SER HIS LYS ASN ILE SEQRES 22 B 414 MET LYS LEU ALA VAL LYS LYS LEU LEU LYS SER LEU THR SEQRES 23 B 414 HIS ILE THR SER LYS ASN ILE LEU LYS VAL CYS PRO VAL SEQRES 24 B 414 LEU PRO SER ILE LEU ASN LEU LEU ALA THR LEU ASP ASP SEQRES 25 B 414 TYR GLU ASP GLY THR ILE TRP SER TYR ASP LYS SER SER SEQRES 26 B 414 LYS GLU LYS VAL LEU LYS PHE LEU SER VAL SER ARG THR SEQRES 27 B 414 SER PRO SER PRO GLY PHE PHE ASN ALA VAL PHE ALA LEU SEQRES 28 B 414 TYR SER SER THR LYS ARG HIS SER PHE LEU ASP TYR TYR SEQRES 29 B 414 LEU GLU TRP LEU PRO PHE TRP GLN LYS SER VAL GLN ARG SEQRES 30 B 414 LEU ASN GLU LYS GLY PHE SER ALA ARG ASN SER ALA GLU SEQRES 31 B 414 VAL LEU ASN GLU PHE TRP THR ASN PHE LEU LYS PHE ALA SEQRES 32 B 414 GLU ASP SER SER GLU GLU ARG VAL LYS LYS MET HET K A 501 1 HET EDO A 502 4 HET K B 501 1 HET EDO B 502 4 HET EDO B 503 4 HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 K 2(K 1+) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *169(H2 O) HELIX 1 AA1 ASP A 35 SER A 41 1 7 HELIX 2 AA2 SER A 44 LEU A 55 1 12 HELIX 3 AA3 ASP A 58 ASP A 75 1 18 HELIX 4 AA4 ASN A 84 ILE A 99 1 16 HELIX 5 AA5 TYR A 103 LEU A 121 1 19 HELIX 6 AA6 ILE A 125 LYS A 127 5 3 HELIX 7 AA7 PHE A 128 CYS A 141 1 14 HELIX 8 AA8 ASP A 144 PHE A 159 1 16 HELIX 9 AA9 ASP A 162 PHE A 173 1 12 HELIX 10 AB1 PHE A 173 VAL A 186 1 14 HELIX 11 AB2 ASN A 189 SER A 194 1 6 HELIX 12 AB3 SER A 200 ASN A 226 1 27 HELIX 13 AB4 ASP A 228 ASN A 233 1 6 HELIX 14 AB5 ASN A 233 ASP A 243 1 11 HELIX 15 AB6 ILE A 246 LEU A 250 5 5 HELIX 16 AB7 THR A 258 ARG A 274 1 17 HELIX 17 AB8 GLY A 275 HIS A 280 1 6 HELIX 18 AB9 HIS A 280 LEU A 295 1 16 HELIX 19 AC1 THR A 296 ILE A 298 5 3 HELIX 20 AC2 ASN A 302 CYS A 307 1 6 HELIX 21 AC3 VAL A 309 ASP A 321 1 13 HELIX 22 AC4 GLY A 326 ASP A 332 5 7 HELIX 23 AC5 SER A 334 ARG A 347 1 14 HELIX 24 AC6 GLY A 353 LYS A 366 1 14 HELIX 25 AC7 ARG A 367 SER A 369 5 3 HELIX 26 AC8 GLU A 376 GLY A 392 1 17 HELIX 27 AC9 ASN A 397 GLU A 414 1 18 HELIX 28 AD1 ASP B 35 ASN B 40 1 6 HELIX 29 AD2 SER B 44 LEU B 55 1 12 HELIX 30 AD3 THR B 61 ASP B 75 1 15 HELIX 31 AD4 ASN B 84 ILE B 99 1 16 HELIX 32 AD5 TYR B 103 LEU B 121 1 19 HELIX 33 AD6 ILE B 125 LYS B 127 5 3 HELIX 34 AD7 PHE B 128 CYS B 141 1 14 HELIX 35 AD8 ASP B 144 PHE B 159 1 16 HELIX 36 AD9 ASP B 162 PHE B 173 1 12 HELIX 37 AE1 PHE B 173 VAL B 186 1 14 HELIX 38 AE2 ASN B 189 SER B 194 1 6 HELIX 39 AE3 SER B 200 HIS B 225 1 26 HELIX 40 AE4 ASP B 228 ASN B 233 1 6 HELIX 41 AE5 ASN B 233 ASP B 243 1 11 HELIX 42 AE6 ILE B 246 LEU B 250 5 5 HELIX 43 AE7 THR B 258 ARG B 274 1 17 HELIX 44 AE8 HIS B 280 LEU B 295 1 16 HELIX 45 AE9 THR B 296 ILE B 298 5 3 HELIX 46 AF1 ASN B 302 CYS B 307 1 6 HELIX 47 AF2 VAL B 309 ASP B 321 1 13 HELIX 48 AF3 GLY B 326 ASP B 332 5 7 HELIX 49 AF4 SER B 334 ARG B 347 1 14 HELIX 50 AF5 GLY B 353 LYS B 366 1 14 HELIX 51 AF6 ARG B 367 SER B 369 5 3 HELIX 52 AF7 GLU B 376 LYS B 391 1 16 HELIX 53 AF8 ASN B 397 GLU B 414 1 18 HELIX 54 AF9 ASP B 415 SER B 417 5 3 LINK O VAL A 185 K K A 501 1555 1555 2.74 LINK O GLU A 188 K K A 501 1555 1555 2.77 LINK OH TYR A 208 K K A 501 1555 1555 2.76 LINK OG SER A 245 K K A 501 1555 1555 2.76 LINK K K A 501 O HOH A 648 1555 1555 2.76 LINK K K A 501 O HOH A 675 1555 1555 2.82 LINK O VAL B 185 K K B 501 1555 1555 2.73 LINK O GLU B 188 K K B 501 1555 1555 2.79 LINK OH TYR B 208 K K B 501 1555 1555 2.81 LINK OG SER B 245 K K B 501 1555 1555 2.74 CISPEP 1 ASN A 254 GLY A 255 0 -2.95 CISPEP 2 GLY A 392 PHE A 393 0 0.86 CISPEP 3 GLY B 392 PHE B 393 0 0.57 CISPEP 4 ARG B 396 ASN B 397 0 1.48 SITE 1 AC1 6 VAL A 185 GLU A 188 TYR A 208 SER A 245 SITE 2 AC1 6 HOH A 648 HOH A 675 SITE 1 AC2 5 ILE A 99 HIS A 111 LEU A 138 GLU A 142 SITE 2 AC2 5 SER A 214 SITE 1 AC3 4 VAL B 185 GLU B 188 TYR B 208 SER B 245 SITE 1 AC4 4 ILE B 99 HIS B 111 GLU B 142 SER B 214 SITE 1 AC5 5 SER B 53 THR B 61 LYS B 64 ALA B 65 SITE 2 AC5 5 ASP B 68 CRYST1 88.514 80.352 97.325 90.00 116.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011298 0.000000 0.005653 0.00000 SCALE2 0.000000 0.012445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011489 0.00000