HEADER METAL BINDING, DNA BINDING PROTEIN 21-DEC-15 5FGU TITLE STRUCTURE OF SDA1 NUCLEASE APOPROTEIN AS AN EGFP FIXED-ARM FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN,EXTRACELLULAR STREPTODORNASE D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHAGE-ENCODED EXTRACELLULAR STREPTODORNASE D,PHAGE-ENCODED COMPND 5 STREPTODORNASE,STREPTODORNASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100, 1314; SOURCE 5 GENE: GFP, SDA1, SDAD2, HKU360_01468, SD90_06600; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32BEGFPX KEYWDS BETA-BETA-ALPHA METAL FINGER NUCLEASE, SEQUENCE NONSPECIFIC DNA KEYWDS 2 BINDING, METAL BINDING PROTEIN, DNA BINDING PROTEIN, METAL BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.F.MOON,J.M.KRAHN,L.XUN,M.J.CUNEO,L.C.PEDERSEN REVDAT 6 15-NOV-23 5FGU 1 REMARK REVDAT 5 27-SEP-23 5FGU 1 REMARK REVDAT 4 18-DEC-19 5FGU 1 REMARK REVDAT 3 20-SEP-17 5FGU 1 JRNL REMARK REVDAT 2 18-MAY-16 5FGU 1 JRNL REVDAT 1 30-MAR-16 5FGU 0 JRNL AUTH A.F.MOON,J.M.KRAHN,X.LU,M.J.CUNEO,L.C.PEDERSEN JRNL TITL STRUCTURAL CHARACTERIZATION OF THE VIRULENCE FACTOR SDA1 JRNL TITL 2 NUCLEASE FROM STREPTOCOCCUS PYOGENES. JRNL REF NUCLEIC ACIDS RES. V. 44 3946 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26969731 JRNL DOI 10.1093/NAR/GKW143 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 54532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2842 - 5.1435 1.00 2754 150 0.1867 0.1852 REMARK 3 2 5.1435 - 4.0840 1.00 2660 144 0.1416 0.1449 REMARK 3 3 4.0840 - 3.5682 1.00 2627 136 0.1534 0.1764 REMARK 3 4 3.5682 - 3.2422 1.00 2609 142 0.1650 0.2188 REMARK 3 5 3.2422 - 3.0099 1.00 2623 138 0.1744 0.2097 REMARK 3 6 3.0099 - 2.8325 1.00 2609 135 0.1966 0.1961 REMARK 3 7 2.8325 - 2.6907 1.00 2565 139 0.1934 0.2548 REMARK 3 8 2.6907 - 2.5736 1.00 2630 132 0.1899 0.2101 REMARK 3 9 2.5736 - 2.4745 1.00 2577 139 0.1876 0.2446 REMARK 3 10 2.4745 - 2.3891 1.00 2588 136 0.1892 0.2091 REMARK 3 11 2.3891 - 2.3144 1.00 2583 134 0.1848 0.2194 REMARK 3 12 2.3144 - 2.2483 1.00 2586 133 0.1920 0.2274 REMARK 3 13 2.2483 - 2.1891 1.00 2581 133 0.1886 0.2369 REMARK 3 14 2.1891 - 2.1357 1.00 2584 140 0.1897 0.2442 REMARK 3 15 2.1357 - 2.0872 1.00 2556 139 0.1823 0.2173 REMARK 3 16 2.0872 - 2.0427 1.00 2580 137 0.1924 0.1986 REMARK 3 17 2.0427 - 2.0019 1.00 2581 140 0.1942 0.2136 REMARK 3 18 2.0019 - 1.9641 1.00 2554 129 0.1985 0.2468 REMARK 3 19 1.9641 - 1.9290 1.00 2572 135 0.2143 0.2345 REMARK 3 20 1.9290 - 1.8963 0.92 2380 122 0.2279 0.2586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4041 REMARK 3 ANGLE : 1.217 5500 REMARK 3 CHIRALITY : 0.054 598 REMARK 3 PLANARITY : 0.006 720 REMARK 3 DIHEDRAL : 13.484 1456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE AUTHORS STATE THAT THE VAST REMARK 3 MAJORITY OF THE OUTLIERS IN THE STRUCTURE COME FROM REGIONS THAT REMARK 3 ARE NOT WELL ORDERED--ESPECIALLY RESIDUES FROM THE C-TERMINAL REMARK 3 DOMAIN (RESIDUES 1336-1385). THIS DOMAIN IS LARGELY DISORDERED, REMARK 3 WITH THE EXCEPTION OF A FEW SMALL SNIPPETS OF SECONDARY REMARK 3 STRUCTURE. THESE REGIONS ARE NOT WELL ORDERED AND THE DENSITY IS REMARK 3 VERY WEAK, BUT ENOUGH TO ASSIGN SEQUENCE. OCCUPANCY REFINEMENT REMARK 3 OF THESE RESIDUES SUGGESTS THEY ARE PRESENT AT FULL OCCUPANCY. REMARK 4 REMARK 4 5FGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 93.15 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54586 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.896 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: EGFP COMPONENT OF 4JRB REMARK 200 REMARK 200 REMARK: BULLET-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY MIXING 0.25UL REMARK 280 OF PROTEIN (13.3MG/ML) WITH 0.25UL MOTHER LIQUOR (45MM NA REMARK 280 CACODYLATE PH 6, 13.5MM MAGNESIUM SULFATE, 1.53M AMMONIUM REMARK 280 SULFATE), USING SITTING DROP VAPOR DIFFUSION, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.70350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.68650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.70350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.68650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.48500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.70350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.68650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.48500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.70350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.68650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TARGET PROTEIN WAS SHOWN BY SANS TO BE MONOMERIC IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 139.37300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.97000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 1122 REMARK 465 TYR A 1123 REMARK 465 ARG A 1124 REMARK 465 GLU A 1125 REMARK 465 LYS A 1126 REMARK 465 TRP A 1127 REMARK 465 GLU A 1128 REMARK 465 THR A 1295 REMARK 465 ALA A 1296 REMARK 465 ASP A 1297 REMARK 465 VAL A 1298 REMARK 465 ASP A 1299 REMARK 465 ILE A 1300 REMARK 465 ASN A 1301 REMARK 465 ASN A 1302 REMARK 465 VAL A 1303 REMARK 465 GLU A 1304 REMARK 465 GLU A 1305 REMARK 465 ASN A 1306 REMARK 465 GLU A 1307 REMARK 465 ILE A 1308 REMARK 465 GLU A 1309 REMARK 465 THR A 1310 REMARK 465 THR A 1311 REMARK 465 ASP A 1312 REMARK 465 ASP A 1313 REMARK 465 GLU A 1314 REMARK 465 ILE A 1315 REMARK 465 GLU A 1316 REMARK 465 GLU A 1317 REMARK 465 GLY A 1318 REMARK 465 ILE A 1319 REMARK 465 GLU A 1320 REMARK 465 ASN A 1321 REMARK 465 GLU A 1322 REMARK 465 PRO A 1323 REMARK 465 ASP A 1324 REMARK 465 THR A 1325 REMARK 465 ASP A 1326 REMARK 465 ALA A 1327 REMARK 465 LEU A 1328 REMARK 465 LYS A 1329 REMARK 465 LYS A 1330 REMARK 465 ASP A 1331 REMARK 465 ASN A 1332 REMARK 465 LYS A 1333 REMARK 465 ASP A 1334 REMARK 465 THR A 1335 REMARK 465 ALA A 1344 REMARK 465 SER A 1345 REMARK 465 PRO A 1360 REMARK 465 LYS A 1361 REMARK 465 THR A 1362 REMARK 465 VAL A 1363 REMARK 465 ASN A 1364 REMARK 465 LEU A 1365 REMARK 465 GLU A 1366 REMARK 465 LYS A 1367 REMARK 465 VAL A 1368 REMARK 465 VAL A 1369 REMARK 465 GLN A 1386 REMARK 465 GLU A 1387 REMARK 465 ASN A 1388 REMARK 465 ILE A 1389 REMARK 465 GLU A 1390 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 LYS A 158 CD CE NZ REMARK 470 LEU A 195 CD1 CD2 REMARK 470 LYS A 214 CD CE NZ REMARK 470 LYS A1060 CE NZ REMARK 470 LYS A1081 CD CE NZ REMARK 470 LYS A1087 CG CD CE NZ REMARK 470 ASN A1143 CG OD1 ND2 REMARK 470 THR A1144 OG1 CG2 REMARK 470 ASN A1145 CG OD1 ND2 REMARK 470 GLN A1146 CG CD OE1 NE2 REMARK 470 HIS A1155 CG ND1 CD2 CE1 NE2 REMARK 470 SER A1156 OG REMARK 470 LYS A1158 CG CD CE NZ REMARK 470 ASN A1159 CG OD1 ND2 REMARK 470 LYS A1162 CE NZ REMARK 470 SER A1174 OG REMARK 470 ARG A1197 CD NE CZ NH1 NH2 REMARK 470 ARG A1217 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A1218 CG CD CE NZ REMARK 470 LYS A1233 CD CE NZ REMARK 470 ARG A1234 CZ NH1 NH2 REMARK 470 SER A1336 OG REMARK 470 ASN A1346 CG OD1 ND2 REMARK 470 GLN A1348 CG CD OE1 NE2 REMARK 470 ASP A1350 CG OD1 OD2 REMARK 470 LYS A1356 CG CD CE NZ REMARK 470 ASP A1357 CG OD1 OD2 REMARK 470 MET A1359 O REMARK 470 GLU A1370 N CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1563 O HOH A 1728 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -156.82 -152.17 REMARK 500 ALA A 230 -21.07 -140.51 REMARK 500 THR A1074 -156.67 -151.11 REMARK 500 ASN A1145 18.95 58.94 REMARK 500 SER A1156 78.58 -170.14 REMARK 500 PRO A1198 38.83 -78.70 REMARK 500 ASP A1270 81.09 -156.57 REMARK 500 ASP A1357 32.76 -86.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FGW RELATED DB: PDB DBREF 5FGU A 1 229 UNP P42212 GFP_AEQVI 1 229 DBREF 5FGU A 1059 1390 UNP Q675N6 Q675N6_STRPY 59 390 SEQADV 5FGU GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 5FGU SER A -1 UNP P42212 EXPRESSION TAG SEQADV 5FGU HIS A 0 UNP P42212 EXPRESSION TAG SEQADV 5FGU A UNP P42212 SER 65 CHROMOPHORE SEQADV 5FGU A UNP P42212 TYR 66 CHROMOPHORE SEQADV 5FGU CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 5FGU ALA A 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 5FGU ALA A 230 UNP P42212 LINKER SEQADV 5FGU ALA A 231 UNP P42212 LINKER SEQADV 5FGU ALA A 232 UNP P42212 LINKER SEQADV 5FGU GLY A 1188 UNP Q675N6 HIS 188 ENGINEERED MUTATION SEQRES 1 A 565 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 565 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 565 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 A 565 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 565 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 565 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 A 565 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 565 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 A 565 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 565 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 565 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 565 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP SEQRES 13 A 565 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG SEQRES 14 A 565 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 565 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 565 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SEQRES 17 A 565 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 565 LEU GLU PHE VAL THR ALA ALA GLY ILE ALA ALA ALA GLY SEQRES 19 A 565 LYS ALA GLN LEU ASP ILE LYS ASN PHE PRO GLU LEU TYR SEQRES 20 A 565 ARG THR THR GLU ARG VAL TYR LYS LYS SER GLY GLN SER SEQRES 21 A 565 THR LYS PRO VAL THR VAL SER ASN ILE HIS TYR SER VAL SEQRES 22 A 565 LEU ASP GLY TYR GLY ARG SER GLY GLU ALA TYR GLY ILE SEQRES 23 A 565 ILE THR LYS ASP MET ILE ASP MET SER ALA GLY TYR ARG SEQRES 24 A 565 GLU LYS TRP GLU SER LYS PRO GLU PRO SER GLY TRP TYR SEQRES 25 A 565 SER TYR PHE PHE LYS ASN THR ASN GLN ARG ALA THR GLU SEQRES 26 A 565 SER ASP TYR LYS HIS SER PRO LYS ASN VAL SER LYS ILE SEQRES 27 A 565 SER ASN ASN ILE LYS ALA SER ILE LEU LEU SER ASN GLY SEQRES 28 A 565 ASN VAL ARG ASN GLY TYR LEU PHE ASP ARG SER GLY LEU SEQRES 29 A 565 ILE ALA ASP SER LEU GLY GLY ARG PRO PHE ARG ASN ASN SEQRES 30 A 565 LEU ILE THR GLY THR ARG THR GLN ASN VAL GLY ASN ASN SEQRES 31 A 565 ASP ARG LYS GLY GLY MET GLN TYR ILE GLU ASN LYS VAL SEQRES 32 A 565 LEU ASP HIS ILE LYS ARG ASN PRO LYS VAL HIS VAL TYR SEQRES 33 A 565 TYR LYS ALA THR PRO VAL TYR GLN GLY SER GLU LEU LEU SEQRES 34 A 565 PRO ARG ALA VAL LEU VAL SER ALA LEU SER SER ASP GLY SEQRES 35 A 565 PHE ILE ASP GLU THR VAL ARG VAL PHE ASN ASN VAL ALA SEQRES 36 A 565 GLY PHE ASN ILE ASP TYR GLN ASN GLY GLY LEU LEU SER SEQRES 37 A 565 SER THR ALA ASP VAL ASP ILE ASN ASN VAL GLU GLU ASN SEQRES 38 A 565 GLU ILE GLU THR THR ASP ASP GLU ILE GLU GLU GLY ILE SEQRES 39 A 565 GLU ASN GLU PRO ASP THR ASP ALA LEU LYS LYS ASP ASN SEQRES 40 A 565 LYS ASP THR SER LEU GLN ASP THR VAL TYR VAL ALA SER SEQRES 41 A 565 ASN GLY GLN SER ASP VAL TYR TRP TYR ASN LYS ASP SER SEQRES 42 A 565 MET PRO LYS THR VAL ASN LEU GLU LYS VAL VAL GLU MET SEQRES 43 A 565 SER GLU GLN VAL ALA LEU THR ARG GLY LYS HIS HIS SER SEQRES 44 A 565 THR GLN GLU ASN ILE GLU MODRES 5FGU CR2 A 66 GLY CHROMOPHORE HET CR2 A 66 19 HET SO4 A1401 5 HET SO4 A1402 5 HET SO4 A1403 5 HET SO4 A1404 5 HET SO4 A1405 5 HET SO4 A1406 5 HET EDO A1407 4 HET EDO A1408 4 HET EDO A1409 4 HET EDO A1410 4 HET ACT A1411 4 HET ACT A1412 4 HET ACT A1413 4 HET ACT A1414 4 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 EDO 4(C2 H6 O2) FORMUL 12 ACT 4(C2 H3 O2 1-) FORMUL 16 HOH *327(H2 O) HELIX 1 AA1 GLY A 4 THR A 9 5 6 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 ALA A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 ASP A 1064 PHE A 1068 5 5 HELIX 8 AA8 GLU A 1076 LYS A 1081 1 6 HELIX 9 AA9 THR A 1113 ALA A 1121 1 9 HELIX 10 AB1 THR A 1149 SER A 1156 1 8 HELIX 11 AB2 ALA A 1191 GLY A 1195 5 5 HELIX 12 AB3 PHE A 1199 ASN A 1201 5 3 HELIX 13 AB4 ARG A 1208 GLY A 1213 1 6 HELIX 14 AB5 GLY A 1219 ASN A 1235 1 17 HELIX 15 AB6 ASN A 1355 MET A 1359 5 5 HELIX 16 AB7 SER A 1372 ARG A 1379 1 8 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O ILE A 47 N SER A 30 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N ALA A 206 O LEU A 221 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 203 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 ASN A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 AA2 2 TYR A1072 THR A1075 0 SHEET 2 AA2 2 PRO A1088 VAL A1091 -1 O VAL A1089 N THR A1074 SHEET 1 AA3 5 HIS A1095 TYR A1096 0 SHEET 2 AA3 5 ALA A1108 ILE A1112 -1 O TYR A1109 N HIS A1095 SHEET 3 AA3 5 VAL A1240 VAL A1247 -1 O VAL A1240 N ILE A1112 SHEET 4 AA3 5 ALA A1257 SER A1264 -1 O ALA A1257 N VAL A1247 SHEET 5 AA3 5 ASP A1270 PHE A1276 -1 O VAL A1275 N VAL A1258 SHEET 1 AA4 3 ARG A1147 ALA A1148 0 SHEET 2 AA4 3 TYR A1137 PHE A1141 -1 N TYR A1139 O ALA A1148 SHEET 3 AA4 3 VAL A1160 SER A1164 -1 O SER A1161 N PHE A1140 SHEET 1 AA5 2 LYS A1168 LEU A1172 0 SHEET 2 AA5 2 VAL A1178 TYR A1182 -1 O ARG A1179 N ILE A1171 SHEET 1 AA6 2 PHE A1184 GLY A1188 0 SHEET 2 AA6 2 LEU A1203 THR A1207 -1 O GLY A1206 N ASP A1185 SHEET 1 AA7 2 VAL A1351 TYR A1352 0 SHEET 2 AA7 2 HIS A1382 HIS A1383 1 O HIS A1382 N TYR A1352 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.33 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 7.77 SITE 1 AC1 4 ARG A1179 ARG A1208 ASN A1215 HOH A1755 SITE 1 AC2 4 LYS A1130 ASP A1185 ARG A1186 HOH A1667 SITE 1 AC3 7 GLY A1188 ALA A1191 ASP A1192 ASN A1211 SITE 2 AC3 7 EDO A1409 HOH A1657 HOH A1745 SITE 1 AC4 5 LYS A 41 TYR A1102 SER A1251 GLN A1374 SITE 2 AC4 5 EDO A1407 SITE 1 AC5 3 VAL A1351 HIS A1382 THR A1385 SITE 1 AC6 9 VAL A 55 PRO A 56 TRP A 57 PRO A 58 SITE 2 AC6 9 HIS A 139 HOH A1540 HOH A1575 HOH A1593 SITE 3 AC6 9 HOH A1607 SITE 1 AC7 3 TYR A 39 LYS A 41 SO4 A1404 SITE 1 AC8 2 TYR A1072 ARG A1073 SITE 1 AC9 6 LYS A1130 ASP A1192 GLY A1196 ARG A1197 SITE 2 AC9 6 PRO A1198 SO4 A1403 SITE 1 AD1 3 HIS A 77 ASN A1067 LYS A1243 SITE 1 AD2 5 HIS A 148 PHE A 165 LYS A 166 HOH A1524 SITE 2 AD2 5 HOH A1683 SITE 1 AD3 4 ALA A 231 ALA A 232 ARG A1274 HOH A1585 SITE 1 AD4 4 ASN A1166 ARG A1186 HOH A1514 HOH A1667 SITE 1 AD5 2 LYS A1168 TYR A1182 CRYST1 81.407 139.373 120.970 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008267 0.00000