HEADER LYASE 21-DEC-15 5FH3 TITLE THE STRUCTURE OF RAT CYTOSOLIC PEPCK VARIANT E89A IN COMPLEX WITH TITLE 2 OXALIC ACID AND GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC [GTP]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK-C; COMPND 5 EC: 4.1.1.32; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PCK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, GLUCONEOGENESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.A.JOHNSON,T.HOLYOAK REVDAT 4 27-SEP-23 5FH3 1 LINK REVDAT 3 04-DEC-19 5FH3 1 REMARK REVDAT 2 20-SEP-17 5FH3 1 JRNL REMARK REVDAT 1 09-NOV-16 5FH3 0 JRNL AUTH T.A.JOHNSON,M.J.MCLEOD,T.HOLYOAK JRNL TITL UTILIZATION OF SUBSTRATE INTRINSIC BINDING ENERGY FOR JRNL TITL 2 CONFORMATIONAL CHANGE AND CATALYTIC FUNCTION IN JRNL TITL 3 PHOSPHOENOLPYRUVATE CARBOXYKINASE. JRNL REF BIOCHEMISTRY V. 55 575 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26709450 JRNL DOI 10.1021/ACS.BIOCHEM.5B01215 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 76005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.632 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5FH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DT4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M HEPES PH 7.4, 8MM REMARK 280 MNCL2, 10MM GTP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.65650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 466 REMARK 465 ALA A 467 REMARK 465 ALA A 468 REMARK 465 GLU A 469 REMARK 465 HIS A 470 REMARK 465 LYS A 471 REMARK 465 GLY A 472 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 311 MN MN A 701 1.56 REMARK 500 O HOH A 835 O HOH A 966 1.63 REMARK 500 ND2 ASN A 322 O HOH A 802 1.96 REMARK 500 O MET A 295 O HOH A 803 1.96 REMARK 500 O VAL A 514 O HOH A 804 2.08 REMARK 500 O HOH A 908 O HOH A 966 2.08 REMARK 500 O ASP A 310 O HOH A 805 2.12 REMARK 500 O HIS A 513 O HOH A 806 2.14 REMARK 500 OD1 ASN A 327 O HOH A 807 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 527 CB TRP A 527 CG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 399 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 -134.33 -129.03 REMARK 500 HIS A 6 -134.76 -131.29 REMARK 500 ASN A 7 50.80 -146.41 REMARK 500 SER A 108 93.98 -164.53 REMARK 500 ARG A 129 -55.67 -126.09 REMARK 500 LYS A 243 -84.65 -73.40 REMARK 500 ASP A 311 -41.31 -151.96 REMARK 500 ASP A 311 -40.05 -143.34 REMARK 500 PHE A 333 72.29 -106.05 REMARK 500 PHE A 333 71.56 -106.45 REMARK 500 ASN A 344 71.75 -162.24 REMARK 500 ASN A 344 79.22 -168.61 REMARK 500 ASN A 359 34.70 71.10 REMARK 500 TRP A 386 -17.06 -46.17 REMARK 500 PHE A 480 15.24 59.77 REMARK 500 ASP A 520 -179.84 -64.87 REMARK 500 PHE A 530 -125.94 56.41 REMARK 500 PHE A 530 -126.08 52.47 REMARK 500 LEU A 566 47.41 -102.44 REMARK 500 ASN A 601 -123.35 54.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 108 GLY A 109 -38.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1203 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 705 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 79 O REMARK 620 2 ASN A 208 O 102.8 REMARK 620 3 HOH A 956 O 100.5 90.6 REMARK 620 4 HOH A1037 O 96.7 160.3 88.7 REMARK 620 5 HOH A1120 O 146.2 78.2 113.3 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 244 NZ REMARK 620 2 HIS A 264 NE2 84.4 REMARK 620 3 ASP A 311 OD1 92.9 93.9 REMARK 620 4 OXL A 703 O3 82.7 166.8 89.6 REMARK 620 5 OXL A 703 O4 89.0 96.8 169.3 80.1 REMARK 620 6 GTP A 704 O1G 172.4 98.1 79.8 95.0 97.7 REMARK 620 7 GTP A 704 O1G 160.6 95.1 106.4 96.1 71.8 26.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 291 OG1 REMARK 620 2 GTP A 704 O3G 173.0 REMARK 620 3 GTP A 704 O1B 89.7 87.2 REMARK 620 4 HOH A 805 O 105.7 80.5 86.4 REMARK 620 5 HOH A 815 O 93.7 79.4 77.5 154.7 REMARK 620 6 HOH A 817 O 101.8 80.1 164.5 100.1 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 291 OG1 REMARK 620 2 GTP A 704 O3G 174.7 REMARK 620 3 GTP A 704 O1B 88.1 90.9 REMARK 620 4 HOH A 805 O 85.0 100.3 99.2 REMARK 620 5 HOH A 815 O 67.0 108.1 98.7 146.1 REMARK 620 6 HOH A 817 O 81.6 100.4 164.4 68.4 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FH0 RELATED DB: PDB REMARK 900 RELATED ID: 5FH1 RELATED DB: PDB REMARK 900 RELATED ID: 5FH2 RELATED DB: PDB REMARK 900 RELATED ID: 5FH4 RELATED DB: PDB REMARK 900 RELATED ID: 5FH5 RELATED DB: PDB DBREF 5FH3 A 1 622 UNP P07379 PCKGC_RAT 1 622 SEQADV 5FH3 ALA A 89 UNP P07379 GLU 89 ENGINEERED MUTATION SEQRES 1 A 622 MET PRO PRO GLN LEU HIS ASN GLY LEU ASP PHE SER ALA SEQRES 2 A 622 LYS VAL ILE GLN GLY SER LEU ASP SER LEU PRO GLN GLU SEQRES 3 A 622 VAL ARG LYS PHE VAL GLU GLY ASN ALA GLN LEU CYS GLN SEQRES 4 A 622 PRO GLU TYR ILE HIS ILE CYS ASP GLY SER GLU GLU GLU SEQRES 5 A 622 TYR GLY ARG LEU LEU ALA HIS MET GLN GLU GLU GLY VAL SEQRES 6 A 622 ILE ARG LYS LEU LYS LYS TYR ASP ASN CYS TRP LEU ALA SEQRES 7 A 622 LEU THR ASP PRO ARG ASP VAL ALA ARG ILE ALA SER LYS SEQRES 8 A 622 THR VAL ILE ILE THR GLN GLU GLN ARG ASP THR VAL PRO SEQRES 9 A 622 ILE PRO LYS SER GLY GLN SER GLN LEU GLY ARG TRP MET SEQRES 10 A 622 SER GLU GLU ASP PHE GLU LYS ALA PHE ASN ALA ARG PHE SEQRES 11 A 622 PRO GLY CYS MET LYS GLY ARG THR MET TYR VAL ILE PRO SEQRES 12 A 622 PHE SER MET GLY PRO LEU GLY SER PRO LEU ALA LYS ILE SEQRES 13 A 622 GLY ILE GLU LEU THR ASP SER PRO TYR VAL VAL ALA SER SEQRES 14 A 622 MET ARG ILE MET THR ARG MET GLY THR SER VAL LEU GLU SEQRES 15 A 622 ALA LEU GLY ASP GLY GLU PHE ILE LYS CYS LEU HIS SER SEQRES 16 A 622 VAL GLY CYS PRO LEU PRO LEU LYS LYS PRO LEU VAL ASN SEQRES 17 A 622 ASN TRP ALA CYS ASN PRO GLU LEU THR LEU ILE ALA HIS SEQRES 18 A 622 LEU PRO ASP ARG ARG GLU ILE ILE SER PHE GLY SER GLY SEQRES 19 A 622 TYR GLY GLY ASN SER LEU LEU GLY LYS LYS CYS PHE ALA SEQRES 20 A 622 LEU ARG ILE ALA SER ARG LEU ALA LYS GLU GLU GLY TRP SEQRES 21 A 622 LEU ALA GLU HIS MET LEU ILE LEU GLY ILE THR ASN PRO SEQRES 22 A 622 GLU GLY LYS LYS LYS TYR LEU ALA ALA ALA PHE PRO SER SEQRES 23 A 622 ALA CYS GLY LYS THR ASN LEU ALA MET MET ASN PRO THR SEQRES 24 A 622 LEU PRO GLY TRP LYS VAL GLU CYS VAL GLY ASP ASP ILE SEQRES 25 A 622 ALA TRP MET LYS PHE ASP ALA GLN GLY ASN LEU ARG ALA SEQRES 26 A 622 ILE ASN PRO GLU ASN GLY PHE PHE GLY VAL ALA PRO GLY SEQRES 27 A 622 THR SER VAL LYS THR ASN PRO ASN ALA ILE LYS THR ILE SEQRES 28 A 622 GLN LYS ASN THR ILE PHE THR ASN VAL ALA GLU THR SER SEQRES 29 A 622 ASP GLY GLY VAL TYR TRP GLU GLY ILE ASP GLU PRO LEU SEQRES 30 A 622 ALA PRO GLY VAL THR ILE THR SER TRP LYS ASN LYS GLU SEQRES 31 A 622 TRP ARG PRO GLN ASP GLU GLU PRO CYS ALA HIS PRO ASN SEQRES 32 A 622 SER ARG PHE CYS THR PRO ALA SER GLN CYS PRO ILE ILE SEQRES 33 A 622 ASP PRO ALA TRP GLU SER PRO GLU GLY VAL PRO ILE GLU SEQRES 34 A 622 GLY ILE ILE PHE GLY GLY ARG ARG PRO ALA GLY VAL PRO SEQRES 35 A 622 LEU VAL TYR GLU ALA LEU SER TRP GLN HIS GLY VAL PHE SEQRES 36 A 622 VAL GLY ALA ALA MET ARG SER GLU ALA THR ALA ALA ALA SEQRES 37 A 622 GLU HIS LYS GLY LYS VAL ILE MET HIS ASP PRO PHE ALA SEQRES 38 A 622 MET ARG PRO PHE PHE GLY TYR ASN PHE GLY LYS TYR LEU SEQRES 39 A 622 ALA HIS TRP LEU SER MET ALA HIS ARG PRO ALA ALA LYS SEQRES 40 A 622 LEU PRO LYS ILE PHE HIS VAL ASN TRP PHE ARG LYS ASP SEQRES 41 A 622 LYS ASN GLY LYS PHE LEU TRP PRO GLY PHE GLY GLU ASN SEQRES 42 A 622 SER ARG VAL LEU GLU TRP MET PHE GLY ARG ILE GLU GLY SEQRES 43 A 622 GLU ASP SER ALA LYS LEU THR PRO ILE GLY TYR VAL PRO SEQRES 44 A 622 LYS GLU ASP ALA LEU ASN LEU LYS GLY LEU GLY ASP VAL SEQRES 45 A 622 ASN VAL GLU GLU LEU PHE GLY ILE SER LYS GLU PHE TRP SEQRES 46 A 622 GLU LYS GLU VAL GLU GLU ILE ASP LYS TYR LEU GLU ASP SEQRES 47 A 622 GLN VAL ASN ALA ASP LEU PRO TYR GLU ILE GLU ARG GLU SEQRES 48 A 622 LEU ARG ALA LEU LYS GLN ARG ILE SER GLN MET HET MN A 701 1 HET MN A 702 2 HET OXL A 703 6 HET GTP A 704 64 HET NA A 705 1 HETNAM MN MANGANESE (II) ION HETNAM OXL OXALATE ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM NA SODIUM ION FORMUL 2 MN 2(MN 2+) FORMUL 4 OXL C2 O4 2- FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 NA NA 1+ FORMUL 7 HOH *403(H2 O) HELIX 1 AA1 PHE A 11 ALA A 13 5 3 HELIX 2 AA2 SER A 19 LEU A 23 5 5 HELIX 3 AA3 PRO A 24 GLN A 39 1 16 HELIX 4 AA4 SER A 49 GLU A 63 1 15 HELIX 5 AA5 ASP A 81 VAL A 85 5 5 HELIX 6 AA6 GLU A 98 VAL A 103 1 6 HELIX 7 AA7 SER A 118 ALA A 128 1 11 HELIX 8 AA8 SER A 163 THR A 174 1 12 HELIX 9 AA9 GLY A 177 GLY A 185 1 9 HELIX 10 AB1 ASN A 213 THR A 217 5 5 HELIX 11 AB2 PRO A 223 ARG A 225 5 3 HELIX 12 AB3 TYR A 235 SER A 239 5 5 HELIX 13 AB4 LEU A 248 GLY A 259 1 12 HELIX 14 AB5 GLY A 289 MET A 295 1 7 HELIX 15 AB6 ASN A 344 ILE A 351 1 8 HELIX 16 AB7 SER A 411 CYS A 413 5 3 HELIX 17 AB8 SER A 449 MET A 460 1 12 HELIX 18 AB9 PRO A 479 MET A 482 5 4 HELIX 19 AC1 ASN A 489 MET A 500 1 12 HELIX 20 AC2 ALA A 501 ARG A 503 5 3 HELIX 21 AC3 GLY A 529 GLU A 532 5 4 HELIX 22 AC4 ASN A 533 GLY A 546 1 14 HELIX 23 AC5 ASN A 573 PHE A 578 1 6 HELIX 24 AC6 SER A 581 VAL A 600 1 20 HELIX 25 AC7 ASN A 601 LEU A 604 5 4 HELIX 26 AC8 PRO A 605 GLN A 621 1 17 SHEET 1 AA1 8 VAL A 15 GLN A 17 0 SHEET 2 AA1 8 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA1 8 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA1 8 LYS A 155 THR A 161 -1 O LYS A 155 N MET A 146 SHEET 5 AA1 8 ILE A 190 SER A 195 1 O CYS A 192 N ILE A 158 SHEET 6 AA1 8 GLU A 227 PHE A 231 1 O SER A 230 N LEU A 193 SHEET 7 AA1 8 LEU A 218 LEU A 222 -1 N LEU A 222 O GLU A 227 SHEET 8 AA1 8 THR A 92 ILE A 94 1 N VAL A 93 O ILE A 219 SHEET 1 AA2 4 VAL A 15 GLN A 17 0 SHEET 2 AA2 4 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA2 4 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA2 4 ARG A 175 MET A 176 -1 O ARG A 175 N SER A 145 SHEET 1 AA3 5 ARG A 67 LYS A 68 0 SHEET 2 AA3 5 TRP A 76 ALA A 78 -1 O LEU A 77 N ARG A 67 SHEET 3 AA3 5 ILE A 356 THR A 358 1 O PHE A 357 N TRP A 76 SHEET 4 AA3 5 ARG A 405 PRO A 409 -1 O ARG A 405 N THR A 358 SHEET 5 AA3 5 GLY A 331 VAL A 335 -1 N PHE A 332 O THR A 408 SHEET 1 AA4 7 LEU A 261 GLU A 263 0 SHEET 2 AA4 7 ALA A 313 PHE A 317 -1 O ALA A 313 N GLU A 263 SHEET 3 AA4 7 LEU A 323 ILE A 326 -1 O ARG A 324 N LYS A 316 SHEET 4 AA4 7 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA4 7 LYS A 277 ALA A 283 1 N ALA A 283 O ILE A 432 SHEET 6 AA4 7 LEU A 266 THR A 271 -1 N ILE A 270 O LYS A 278 SHEET 7 AA4 7 LYS A 304 GLY A 309 -1 O LYS A 304 N THR A 271 SHEET 1 AA5 6 LEU A 261 GLU A 263 0 SHEET 2 AA5 6 ALA A 313 PHE A 317 -1 O ALA A 313 N GLU A 263 SHEET 3 AA5 6 LEU A 323 ILE A 326 -1 O ARG A 324 N LYS A 316 SHEET 4 AA5 6 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA5 6 LYS A 510 VAL A 514 1 O LYS A 510 N ILE A 431 SHEET 6 AA5 6 VAL A 444 GLU A 446 -1 N TYR A 445 O HIS A 513 SHEET 1 AA6 3 VAL A 368 TYR A 369 0 SHEET 2 AA6 3 ALA A 361 THR A 363 -1 N ALA A 361 O TYR A 369 SHEET 3 AA6 3 ILE A 383 THR A 384 -1 O THR A 384 N GLU A 362 SHEET 1 AA7 2 ARG A 461 GLU A 463 0 SHEET 2 AA7 2 ILE A 475 HIS A 477 -1 O MET A 476 N SER A 462 SHEET 1 AA8 2 ALA A 550 THR A 553 0 SHEET 2 AA8 2 GLY A 556 PRO A 559 -1 O VAL A 558 N LYS A 551 LINK O LEU A 79 NA NA A 705 1555 1555 2.29 LINK O ASN A 208 NA NA A 705 1555 1555 2.31 LINK NZ LYS A 244 MN MN A 701 1555 1555 2.49 LINK NE2 HIS A 264 MN MN A 701 1555 1555 2.29 LINK OG1ATHR A 291 MN A MN A 702 1555 1555 2.13 LINK OG1BTHR A 291 MN B MN A 702 1555 1555 2.21 LINK OD1AASP A 311 MN MN A 701 1555 1555 2.43 LINK MN MN A 701 O3 OXL A 703 1555 1555 2.21 LINK MN MN A 701 O4 OXL A 703 1555 1555 1.87 LINK MN MN A 701 O1GAGTP A 704 1555 1555 2.07 LINK MN MN A 701 O1GBGTP A 704 1555 1555 2.60 LINK MN A MN A 702 O3GAGTP A 704 1555 1555 2.16 LINK MN A MN A 702 O1BAGTP A 704 1555 1555 2.20 LINK MN B MN A 702 O3GBGTP A 704 1555 1555 2.20 LINK MN B MN A 702 O1BBGTP A 704 1555 1555 2.14 LINK MN A MN A 702 O HOH A 805 1555 1555 1.99 LINK MN B MN A 702 O HOH A 805 1555 1555 2.68 LINK MN A MN A 702 O HOH A 815 1555 1555 2.54 LINK MN B MN A 702 O HOH A 815 1555 1555 1.94 LINK MN A MN A 702 O HOH A 817 1555 1555 1.90 LINK MN B MN A 702 O HOH A 817 1555 1555 2.62 LINK NA NA A 705 O HOH A 956 1555 1555 2.34 LINK NA NA A 705 O HOH A1037 1555 1555 2.40 LINK NA NA A 705 O HOH A1120 1555 1555 2.49 CISPEP 1 LEU A 200 PRO A 201 0 0.42 SITE 1 AC1 5 LYS A 244 HIS A 264 ASP A 311 OXL A 703 SITE 2 AC1 5 GTP A 704 SITE 1 AC2 6 THR A 291 ASP A 310 GTP A 704 HOH A 805 SITE 2 AC2 6 HOH A 815 HOH A 817 SITE 1 AC3 12 LYS A 243 LYS A 244 HIS A 264 SER A 286 SITE 2 AC3 12 ASP A 311 ARG A 405 MN A 701 GTP A 704 SITE 3 AC3 12 HOH A 908 HOH A1008 HOH A1009 HOH A1056 SITE 1 AC4 31 HIS A 264 PRO A 285 SER A 286 ALA A 287 SITE 2 AC4 31 CYS A 288 GLY A 289 LYS A 290 THR A 291 SITE 3 AC4 31 ASN A 292 ASP A 311 VAL A 335 ARG A 405 SITE 4 AC4 31 ARG A 436 TRP A 516 PHE A 517 PHE A 525 SITE 5 AC4 31 GLY A 529 PHE A 530 ASN A 533 MN A 701 SITE 6 AC4 31 MN A 702 OXL A 703 HOH A 805 HOH A 815 SITE 7 AC4 31 HOH A 817 HOH A 824 HOH A 825 HOH A 831 SITE 8 AC4 31 HOH A 842 HOH A 850 HOH A 930 SITE 1 AC5 5 LEU A 79 ASN A 208 HOH A 956 HOH A1037 SITE 2 AC5 5 HOH A1120 CRYST1 45.699 119.313 60.821 90.00 107.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021882 0.000000 0.007088 0.00000 SCALE2 0.000000 0.008381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017283 0.00000