HEADER IMMUNE SYSTEM 21-DEC-15 5FHB TITLE CRYSTAL STRUCTURE OF PROTECTIVE EBOLA VIRUS ANTIBODY 100 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 100 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 100 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 CELL: PBMC; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293 CELLS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 CELL: PBMC; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293 CELLS KEYWDS IG DOMAIN, FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.S.A.GILMAN,J.S.MCLELLAN REVDAT 4 23-OCT-24 5FHB 1 REMARK REVDAT 3 27-SEP-23 5FHB 1 JRNL REMARK REVDAT 2 30-MAR-16 5FHB 1 JRNL REVDAT 1 16-MAR-16 5FHB 0 JRNL AUTH J.MISASI,M.S.GILMAN,M.KANEKIYO,M.GUI,A.CAGIGI,S.MULANGU, JRNL AUTH 2 D.CORTI,J.E.LEDGERWOOD,A.LANZAVECCHIA,J.CUNNINGHAM, JRNL AUTH 3 J.J.MUYEMBE-TAMFUN,U.BAXA,B.S.GRAHAM,Y.XIANG,N.J.SULLIVAN, JRNL AUTH 4 J.S.MCLELLAN JRNL TITL STRUCTURAL AND MOLECULAR BASIS FOR EBOLA VIRUS JRNL TITL 2 NEUTRALIZATION BY PROTECTIVE HUMAN ANTIBODIES. JRNL REF SCIENCE V. 351 1343 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 26917592 JRNL DOI 10.1126/SCIENCE.AAD6117 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4921 - 4.7511 1.00 3139 127 0.1815 0.1930 REMARK 3 2 4.7511 - 3.7727 1.00 2990 116 0.1455 0.1674 REMARK 3 3 3.7727 - 3.2963 1.00 2942 154 0.1495 0.1924 REMARK 3 4 3.2963 - 2.9951 1.00 2889 137 0.1507 0.1834 REMARK 3 5 2.9951 - 2.7806 1.00 2898 141 0.1466 0.1914 REMARK 3 6 2.7806 - 2.6167 1.00 2906 138 0.1529 0.2034 REMARK 3 7 2.6167 - 2.4857 1.00 2837 148 0.1525 0.1931 REMARK 3 8 2.4857 - 2.3775 1.00 2855 148 0.1555 0.2129 REMARK 3 9 2.3775 - 2.2860 1.00 2860 164 0.1610 0.1999 REMARK 3 10 2.2860 - 2.2071 1.00 2858 143 0.1538 0.1998 REMARK 3 11 2.2071 - 2.1381 1.00 2828 154 0.1588 0.1866 REMARK 3 12 2.1381 - 2.0770 1.00 2831 142 0.1613 0.2002 REMARK 3 13 2.0770 - 2.0224 1.00 2821 164 0.1882 0.2319 REMARK 3 14 2.0224 - 1.9730 1.00 2838 140 0.2136 0.2565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3412 REMARK 3 ANGLE : 1.623 4645 REMARK 3 CHIRALITY : 0.102 525 REMARK 3 PLANARITY : 0.008 588 REMARK 3 DIHEDRAL : 15.046 1216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 1:107) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8297 -31.5015 32.9313 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.1132 REMARK 3 T33: 0.1848 T12: -0.0320 REMARK 3 T13: -0.0187 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.5105 L22: 2.1911 REMARK 3 L33: 2.6335 L12: 0.9169 REMARK 3 L13: 0.7596 L23: -0.3334 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: -0.0082 S13: -0.3493 REMARK 3 S21: 0.1253 S22: 0.0286 S23: -0.1388 REMARK 3 S31: 0.3797 S32: -0.0136 S33: -0.1234 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 108:215) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4773 -21.1348 2.9401 REMARK 3 T TENSOR REMARK 3 T11: 0.2521 T22: 0.1512 REMARK 3 T33: 0.2105 T12: -0.1001 REMARK 3 T13: -0.0031 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.0033 L22: 1.1271 REMARK 3 L33: 3.2776 L12: -0.0566 REMARK 3 L13: -1.1605 L23: -0.3876 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.0815 S13: 0.1018 REMARK 3 S21: 0.0215 S22: -0.0014 S23: -0.2665 REMARK 3 S31: -0.0233 S32: 0.1530 S33: 0.0253 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN L AND RESID 2:109) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7908 -13.3802 36.4645 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.0715 REMARK 3 T33: 0.1530 T12: 0.0058 REMARK 3 T13: 0.0000 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.5270 L22: 2.6087 REMARK 3 L33: 2.6359 L12: 0.6243 REMARK 3 L13: 0.0958 L23: -0.8567 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.0387 S13: 0.1170 REMARK 3 S21: -0.0129 S22: 0.0164 S23: -0.0923 REMARK 3 S31: 0.0372 S32: 0.0261 S33: -0.0132 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN L AND RESID 110:209) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5479 -5.6172 -0.0729 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.1251 REMARK 3 T33: 0.1703 T12: -0.0539 REMARK 3 T13: -0.0182 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.9139 L22: 3.9524 REMARK 3 L33: 2.8771 L12: 1.8027 REMARK 3 L13: 0.6914 L23: 2.4464 REMARK 3 S TENSOR REMARK 3 S11: 0.1228 S12: 0.0076 S13: -0.0142 REMARK 3 S21: 0.1616 S22: -0.0094 S23: -0.0929 REMARK 3 S31: 0.0855 S32: -0.0827 S33: -0.0794 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 33.487 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID: 4QHK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.4MG/ML 100 FAB, 38% PEG 400, 4.75% REMARK 280 PEG 3350, 0.1M SODIUM ACETATE PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.67467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.33733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.33733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 132.67467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 485 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 562 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 EDO H 302 O HOH H 401 2.04 REMARK 500 O HOH H 411 O HOH H 510 2.07 REMARK 500 O HOH H 478 O HOH H 491 2.08 REMARK 500 O HOH H 467 O HOH H 507 2.10 REMARK 500 O HOH L 473 O HOH L 547 2.14 REMARK 500 O HOH H 404 O HOH H 512 2.14 REMARK 500 O HOH H 419 O HOH H 474 2.15 REMARK 500 O HOH L 512 O HOH L 528 2.16 REMARK 500 O HOH H 423 O HOH H 506 2.18 REMARK 500 O HOH H 451 O HOH H 508 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 412 O HOH H 422 4655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG H 66 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -14.87 84.81 REMARK 500 ASP L 51 -46.83 78.35 REMARK 500 ASN L 52 13.95 -150.08 REMARK 500 SER L 93 -19.35 82.17 REMARK 500 ASP L 151 -118.28 50.71 REMARK 500 ASN L 170 -1.64 82.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT H 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT L 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FHA RELATED DB: PDB REMARK 900 RELATED ID: 5FHC RELATED DB: PDB DBREF 5FHB H 1 216 PDB 5FHB 5FHB 1 216 DBREF 5FHB L 2 210 PDB 5FHB 5FHB 2 210 SEQRES 1 H 228 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 228 PRO SER ASP THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 228 GLY SER LEU SER SER PHE TYR TRP SER TRP ILE ARG GLN SEQRES 4 H 228 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE TYR SEQRES 5 H 228 TYR SER GLY SER PRO ASN TYR SER PRO SER LEU GLU SER SEQRES 6 H 228 ARG VAL THR MET SER VAL ASP THR THR ARG ASN GLN ILE SEQRES 7 H 228 SER LEU LYS LEU ASP SER VAL THR ALA ALA ASP THR ALA SEQRES 8 H 228 VAL TYR TYR CYS VAL ARG ALA SER ARG SER TYR TYR TRP SEQRES 9 H 228 GLY SER TYR ARG PRO THR ALA PHE ASP SER TRP GLY GLN SEQRES 10 H 228 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 228 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 228 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 228 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 228 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 228 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 228 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 228 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 228 LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 208 TYR GLU LEU THR GLN PRO LEU SER VAL SER VAL SER PRO SEQRES 2 L 208 GLY GLN THR ALA ILE PHE THR CYS SER GLY ASP ASN LEU SEQRES 3 L 208 GLY ASP LYS TYR VAL CYS TRP PHE GLN GLN ARG PRO GLY SEQRES 4 L 208 GLN SER PRO MET LEU LEU ILE TYR GLN ASP ASN LYS ARG SEQRES 5 L 208 PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SER SEQRES 6 L 208 GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SER SEQRES 7 L 208 THR ASP GLU ALA ASP TYR TYR CYS GLN THR TRP ASP SER SEQRES 8 L 208 THR VAL VAL PHE GLY GLY GLY THR LYS LEU THR VAL LEU SEQRES 9 L 208 GLY GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO SEQRES 10 L 208 PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU SEQRES 11 L 208 VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL THR SEQRES 12 L 208 VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS ALA GLY SEQRES 13 L 208 VAL GLU THR THR THR PRO SER LYS GLN SER ASN ASN LYS SEQRES 14 L 208 TYR ALA ALA SER SER TYR LEU SER LEU THR PRO GLU GLN SEQRES 15 L 208 TRP LYS SER HIS ARG SER TYR SER CYS GLN VAL THR HIS SEQRES 16 L 208 GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO THR GLU HET EDO H 301 4 HET EDO H 302 4 HET EDO H 303 4 HET EDO H 304 4 HET EDO H 305 4 HET EDO H 306 4 HET ACT H 307 4 HET EDO L 301 4 HET EDO L 302 4 HET EDO L 303 4 HET EDO L 304 4 HET ACT L 305 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 10(C2 H6 O2) FORMUL 9 ACT 2(C2 H3 O2 1-) FORMUL 15 HOH *291(H2 O) HELIX 1 AA1 SER H 28 PHE H 32 5 5 HELIX 2 AA2 THR H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 ALA H 158 5 3 HELIX 4 AA4 SER H 187 LEU H 189 5 3 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 ASN L 27 LYS L 31 5 5 HELIX 7 AA7 GLN L 79 GLU L 83 5 5 HELIX 8 AA8 SER L 121 ALA L 127 1 7 HELIX 9 AA9 THR L 181 HIS L 188 1 8 SHEET 1 AA1 4 GLN H 3 GLU H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA2 6 ALA H 88 TYR H 99 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 ASN H 58 TYR H 59 -1 O ASN H 58 N TYR H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA3 4 ALA H 88 TYR H 99 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 TYR H 100D TRP H 103 -1 O SER H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 SER L 9 VAL L 13 0 SHEET 2 AA7 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA7 5 ASP L 85 TRP L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 5 CYS L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA7 5 MET L 45 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AA8 4 SER L 9 VAL L 13 0 SHEET 2 AA8 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA8 4 ASP L 85 TRP L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 VAL L 96 PHE L 98 -1 O VAL L 97 N THR L 90 SHEET 1 AA9 3 ALA L 19 SER L 24 0 SHEET 2 AA9 3 THR L 70 ILE L 75 -1 O LEU L 73 N PHE L 21 SHEET 3 AA9 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AB1 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB1 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AB2 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB2 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB3 4 SER L 153 VAL L 155 0 SHEET 2 AB3 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB3 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB3 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.15 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.10 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.16 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.08 CISPEP 1 PHE H 146 PRO H 147 0 -10.03 CISPEP 2 GLU H 148 PRO H 149 0 0.38 CISPEP 3 TYR L 140 PRO L 141 0 4.66 SITE 1 AC1 7 THR H 100G ALA H 100H PHE H 100I HOH H 425 SITE 2 AC1 7 CYS L 34 GLN L 89 TRP L 91 SITE 1 AC2 4 ARG H 100E PRO H 100F HOH H 401 TRP L 91 SITE 1 AC3 4 GLU H 148 PRO H 149 VAL H 150 ALA H 168 SITE 1 AC4 4 GLN H 3 LEU H 4 SER H 102 TRP H 103 SITE 1 AC5 4 TYR H 91 HOH H 448 GLY L 41 GLN L 42 SITE 1 AC6 7 LYS H 143 GLN H 171 SER H 177 HOH H 456 SITE 2 AC6 7 GLU L 160 SER L 179 HOH L 453 SITE 1 AC7 5 VAL H 121 PHE H 122 LYS H 209 HOH H 423 SITE 2 AC7 5 GLU L 123 SITE 1 AC8 4 LYS H 81 TYR L 49 LYS L 53 ARG L 54 SITE 1 AC9 5 GLN L 37 GLN L 38 ARG L 39 GLN L 42 SITE 2 AC9 5 SER L 43 SITE 1 AD1 4 SER L 65 SER L 67 THR L 70 LYS L 110 SITE 1 AD2 5 GLN L 37 ARG L 39 MET L 45 PHE L 62 SITE 2 AD2 5 ASP L 82 SITE 1 AD3 6 LYS H 209 GLU H 212 GLU L 123 GLU L 198 SITE 2 AD3 6 GLY L 199 SER L 200 CRYST1 71.540 71.540 199.012 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013978 0.008070 0.000000 0.00000 SCALE2 0.000000 0.016141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005025 0.00000