HEADER RNA 14-OCT-15 5FK6 TITLE SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-I RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 4 ORGANISM_TAXID: 119072 KEYWDS RNA, KINK TURN, RNA MOTIF, SAM-I RIBOSWITCH EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,D.M.J.LILLEY REVDAT 3 10-JAN-24 5FK6 1 REMARK LINK ATOM REVDAT 2 06-JUL-16 5FK6 1 JRNL REVDAT 1 25-MAY-16 5FK6 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL A CRITICAL BASE PAIR IN K-TURNS DETERMINES THE JRNL TITL 2 CONFORMATIONAL CLASS ADOPTED, AND CORRELATES WITH BIOLOGICAL JRNL TITL 3 FUNCTION. JRNL REF NUCLEIC ACIDS RES. V. 44 5390 2016 JRNL REFN ISSN 0305-1048 JRNL PMID 27016741 JRNL DOI 10.1093/NAR/GKW201 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 19660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.6308 - 4.7819 0.99 2661 150 0.1645 0.2038 REMARK 3 2 4.7819 - 3.7958 0.98 2634 178 0.1743 0.2458 REMARK 3 3 3.7958 - 3.3160 1.00 2680 136 0.2110 0.3201 REMARK 3 4 3.3160 - 3.0129 0.99 2659 163 0.2560 0.3364 REMARK 3 5 3.0129 - 2.7969 0.98 2647 123 0.3941 0.5157 REMARK 3 6 2.7969 - 2.6320 0.99 2667 145 0.4487 0.4868 REMARK 3 7 2.6320 - 2.5002 0.99 2693 124 0.4733 0.5891 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 134.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2303 REMARK 3 ANGLE : 0.616 3589 REMARK 3 CHIRALITY : 0.032 475 REMARK 3 PLANARITY : 0.005 96 REMARK 3 DIHEDRAL : 15.549 1139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4587 -0.7098 -0.8149 REMARK 3 T TENSOR REMARK 3 T11: 1.7098 T22: 1.7448 REMARK 3 T33: 1.0106 T12: 0.1082 REMARK 3 T13: -0.0518 T23: 0.1555 REMARK 3 L TENSOR REMARK 3 L11: 9.1641 L22: 8.7331 REMARK 3 L33: 9.2859 L12: -5.6954 REMARK 3 L13: -5.1562 L23: 5.4189 REMARK 3 S TENSOR REMARK 3 S11: 0.4197 S12: 4.0867 S13: 0.2034 REMARK 3 S21: 0.4057 S22: -3.1871 S23: 0.4111 REMARK 3 S31: 1.8934 S32: 0.6554 S33: 1.8778 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9964 14.1183 -3.6484 REMARK 3 T TENSOR REMARK 3 T11: 1.5983 T22: 1.2512 REMARK 3 T33: 0.8028 T12: 0.3093 REMARK 3 T13: 0.1028 T23: 0.2587 REMARK 3 L TENSOR REMARK 3 L11: 7.8495 L22: 0.6974 REMARK 3 L33: 9.0975 L12: -1.5812 REMARK 3 L13: 0.8066 L23: 1.3019 REMARK 3 S TENSOR REMARK 3 S11: -1.4027 S12: -1.3104 S13: -0.4139 REMARK 3 S21: 0.2563 S22: 0.5066 S23: 0.1704 REMARK 3 S31: 2.2008 S32: 0.4629 S33: 0.1422 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4441 22.7204 -16.9264 REMARK 3 T TENSOR REMARK 3 T11: 1.4895 T22: 1.6897 REMARK 3 T33: 0.9784 T12: -0.1109 REMARK 3 T13: -0.1733 T23: 0.2359 REMARK 3 L TENSOR REMARK 3 L11: 2.5603 L22: 9.6713 REMARK 3 L33: 4.7852 L12: 0.2500 REMARK 3 L13: 2.9690 L23: -0.2532 REMARK 3 S TENSOR REMARK 3 S11: -1.2578 S12: 3.1993 S13: 1.1525 REMARK 3 S21: 0.4926 S22: 1.5994 S23: 0.5505 REMARK 3 S31: -1.4585 S32: -0.2456 S33: -0.3195 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 13:16) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3270 16.2052 -26.7223 REMARK 3 T TENSOR REMARK 3 T11: 2.3320 T22: 3.0419 REMARK 3 T33: 1.2519 T12: -0.3010 REMARK 3 T13: 0.3392 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 5.7744 L22: 5.6324 REMARK 3 L33: 4.7734 L12: -4.9416 REMARK 3 L13: -2.2816 L23: 4.3748 REMARK 3 S TENSOR REMARK 3 S11: -0.5686 S12: 5.7504 S13: -0.6897 REMARK 3 S21: 0.0162 S22: -1.3078 S23: -0.3291 REMARK 3 S31: -4.0582 S32: -0.3381 S33: 1.2438 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 17:20) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5487 1.8157 -30.9409 REMARK 3 T TENSOR REMARK 3 T11: 1.9456 T22: 2.8211 REMARK 3 T33: 1.2598 T12: 0.1952 REMARK 3 T13: 0.0705 T23: -0.7144 REMARK 3 L TENSOR REMARK 3 L11: 8.6645 L22: 8.8829 REMARK 3 L33: 6.6546 L12: 2.4904 REMARK 3 L13: 2.4014 L23: 3.8893 REMARK 3 S TENSOR REMARK 3 S11: 2.8407 S12: -1.9757 S13: 0.4228 REMARK 3 S21: -2.4152 S22: -0.7751 S23: -4.6560 REMARK 3 S31: -0.2280 S32: 4.1117 S33: -1.8139 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 21:24) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3285 2.2399 -26.2605 REMARK 3 T TENSOR REMARK 3 T11: 1.0891 T22: 1.2330 REMARK 3 T33: 0.8080 T12: -0.2272 REMARK 3 T13: -0.0380 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.9796 L22: 5.3232 REMARK 3 L33: 3.7026 L12: 1.3151 REMARK 3 L13: -2.8875 L23: -1.9091 REMARK 3 S TENSOR REMARK 3 S11: 1.3292 S12: -0.2708 S13: 0.3128 REMARK 3 S21: -1.0577 S22: -0.1664 S23: -0.0142 REMARK 3 S31: 0.1479 S32: 0.7179 S33: -1.0427 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 25:28) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8863 2.5805 -26.7288 REMARK 3 T TENSOR REMARK 3 T11: 2.2237 T22: 1.4830 REMARK 3 T33: 0.8297 T12: -0.7131 REMARK 3 T13: -0.1129 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 2.1698 L22: 8.2490 REMARK 3 L33: 3.4228 L12: 0.8696 REMARK 3 L13: 0.6314 L23: -1.5408 REMARK 3 S TENSOR REMARK 3 S11: 1.5420 S12: -0.3087 S13: -0.9144 REMARK 3 S21: -0.1731 S22: -0.4241 S23: 0.1537 REMARK 3 S31: 3.4885 S32: -1.8892 S33: -1.3791 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 29:33) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7663 7.9926 -34.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.9488 T22: 1.2943 REMARK 3 T33: 0.5545 T12: -0.3046 REMARK 3 T13: 0.0117 T23: -0.1739 REMARK 3 L TENSOR REMARK 3 L11: 6.5349 L22: 6.6850 REMARK 3 L33: 4.3468 L12: -2.5861 REMARK 3 L13: -4.8958 L23: -0.2690 REMARK 3 S TENSOR REMARK 3 S11: -0.4815 S12: 2.4275 S13: -0.5935 REMARK 3 S21: 0.6632 S22: -0.1088 S23: 0.3358 REMARK 3 S31: 0.3728 S32: 0.0476 S33: 0.3442 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 34:39) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2932 6.6108 -29.8460 REMARK 3 T TENSOR REMARK 3 T11: 1.3519 T22: 1.8425 REMARK 3 T33: 0.8010 T12: -0.3194 REMARK 3 T13: -0.1249 T23: -0.1361 REMARK 3 L TENSOR REMARK 3 L11: 4.8777 L22: 4.7060 REMARK 3 L33: 3.9779 L12: -1.0511 REMARK 3 L13: 0.6748 L23: 2.7731 REMARK 3 S TENSOR REMARK 3 S11: 0.3080 S12: -1.1286 S13: 0.0474 REMARK 3 S21: 1.0127 S22: 0.6085 S23: -0.8366 REMARK 3 S31: -2.0265 S32: 2.6107 S33: -0.7809 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 40:45) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4328 16.9650 -15.6417 REMARK 3 T TENSOR REMARK 3 T11: 1.5176 T22: 2.0600 REMARK 3 T33: 0.9731 T12: -0.3872 REMARK 3 T13: -0.1108 T23: -0.1167 REMARK 3 L TENSOR REMARK 3 L11: 7.9511 L22: 2.7572 REMARK 3 L33: 6.1141 L12: -2.4066 REMARK 3 L13: -5.1189 L23: 4.2914 REMARK 3 S TENSOR REMARK 3 S11: -0.4887 S12: -0.0763 S13: 0.5562 REMARK 3 S21: 0.5360 S22: 1.7579 S23: -1.0565 REMARK 3 S31: -0.0077 S32: 3.3627 S33: -0.8481 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 46:49) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1082 17.4289 -0.5513 REMARK 3 T TENSOR REMARK 3 T11: 1.9376 T22: 1.5820 REMARK 3 T33: 0.8343 T12: -0.2092 REMARK 3 T13: -0.2722 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 5.9761 L22: 9.6570 REMARK 3 L33: 4.9129 L12: 2.1159 REMARK 3 L13: -1.5675 L23: -6.6757 REMARK 3 S TENSOR REMARK 3 S11: 0.2609 S12: -0.7910 S13: -0.0733 REMARK 3 S21: 0.2660 S22: 0.1814 S23: -0.2565 REMARK 3 S31: -2.3785 S32: 1.5139 S33: -0.5676 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 50:56) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4056 19.2976 0.9310 REMARK 3 T TENSOR REMARK 3 T11: 2.8202 T22: 1.8525 REMARK 3 T33: 1.1572 T12: -0.1252 REMARK 3 T13: -0.4598 T23: -0.1001 REMARK 3 L TENSOR REMARK 3 L11: 4.0351 L22: 3.8219 REMARK 3 L33: 5.9520 L12: 2.3408 REMARK 3 L13: -0.0125 L23: 2.6693 REMARK 3 S TENSOR REMARK 3 S11: 1.0955 S12: 0.1646 S13: 0.1506 REMARK 3 S21: 1.3749 S22: -0.6018 S23: -1.0002 REMARK 3 S31: -4.1025 S32: 1.3412 S33: -0.1593 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 57:60) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3659 11.9987 -12.5639 REMARK 3 T TENSOR REMARK 3 T11: 1.5201 T22: 1.4308 REMARK 3 T33: 0.8423 T12: -0.0484 REMARK 3 T13: -0.0781 T23: -0.2185 REMARK 3 L TENSOR REMARK 3 L11: 2.2892 L22: 8.5645 REMARK 3 L33: 7.7503 L12: 3.4987 REMARK 3 L13: -2.3279 L23: 0.9921 REMARK 3 S TENSOR REMARK 3 S11: -0.4747 S12: 0.9413 S13: -0.4899 REMARK 3 S21: 1.4290 S22: 0.6616 S23: -0.9658 REMARK 3 S31: 1.2823 S32: 1.4913 S33: -1.1869 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 61:64) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2244 15.5364 -22.4607 REMARK 3 T TENSOR REMARK 3 T11: 0.9178 T22: 1.1910 REMARK 3 T33: 0.7093 T12: 0.0373 REMARK 3 T13: -0.1562 T23: 0.1019 REMARK 3 L TENSOR REMARK 3 L11: 5.0895 L22: 6.8873 REMARK 3 L33: 2.5724 L12: 1.9893 REMARK 3 L13: 3.5829 L23: 1.2606 REMARK 3 S TENSOR REMARK 3 S11: 0.9109 S12: -0.0371 S13: -0.2193 REMARK 3 S21: 0.3666 S22: -0.7175 S23: -0.0069 REMARK 3 S31: 0.7625 S32: 1.5158 S33: 0.6128 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 65:69) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3693 9.4627 -21.2329 REMARK 3 T TENSOR REMARK 3 T11: 1.2584 T22: 1.4815 REMARK 3 T33: 0.6610 T12: -0.3157 REMARK 3 T13: -0.0503 T23: 0.2255 REMARK 3 L TENSOR REMARK 3 L11: 7.9143 L22: 5.3219 REMARK 3 L33: 3.0001 L12: -1.3175 REMARK 3 L13: -3.8606 L23: -0.8703 REMARK 3 S TENSOR REMARK 3 S11: 0.9355 S12: 0.1462 S13: -0.7948 REMARK 3 S21: 1.3189 S22: -0.9293 S23: 0.3257 REMARK 3 S31: 2.8021 S32: -1.6633 S33: -0.4308 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 70:73) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7159 15.1869 -15.0428 REMARK 3 T TENSOR REMARK 3 T11: 1.3726 T22: 3.3435 REMARK 3 T33: 0.9241 T12: -0.1767 REMARK 3 T13: 0.0055 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.1220 L22: 4.1229 REMARK 3 L33: 2.0659 L12: 1.2438 REMARK 3 L13: 6.0173 L23: -3.5844 REMARK 3 S TENSOR REMARK 3 S11: -1.3902 S12: -0.0375 S13: -0.2198 REMARK 3 S21: 0.2744 S22: 0.0813 S23: 0.2069 REMARK 3 S31: -0.3181 S32: -3.0095 S33: -0.1520 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 74:80) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0721 18.2592 -25.1266 REMARK 3 T TENSOR REMARK 3 T11: 1.2970 T22: 2.4664 REMARK 3 T33: 0.8188 T12: -0.2439 REMARK 3 T13: -0.2917 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 8.5328 L22: 7.1277 REMARK 3 L33: 0.3618 L12: -1.6230 REMARK 3 L13: 0.9070 L23: 1.8051 REMARK 3 S TENSOR REMARK 3 S11: -0.6729 S12: -0.9770 S13: 0.7255 REMARK 3 S21: -0.7543 S22: 0.6864 S23: 0.6353 REMARK 3 S31: 0.6828 S32: -1.7702 S33: -0.0417 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 81:84) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9726 13.1206 -10.8017 REMARK 3 T TENSOR REMARK 3 T11: 1.2662 T22: 1.5792 REMARK 3 T33: 1.0170 T12: -0.2114 REMARK 3 T13: -0.0903 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 3.5188 L22: 4.1917 REMARK 3 L33: 7.4716 L12: -3.3586 REMARK 3 L13: 1.1840 L23: -2.8828 REMARK 3 S TENSOR REMARK 3 S11: -0.2572 S12: -0.8620 S13: -0.3132 REMARK 3 S21: -1.6621 S22: 0.6581 S23: 1.6492 REMARK 3 S31: 0.5990 S32: -1.7870 S33: -0.2224 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 85:90) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5994 6.9827 -7.5858 REMARK 3 T TENSOR REMARK 3 T11: 1.2381 T22: 0.9992 REMARK 3 T33: 0.7072 T12: 0.1344 REMARK 3 T13: -0.0341 T23: 0.1411 REMARK 3 L TENSOR REMARK 3 L11: 3.4960 L22: 5.4454 REMARK 3 L33: 6.4489 L12: 1.4121 REMARK 3 L13: 4.4843 L23: 0.5898 REMARK 3 S TENSOR REMARK 3 S11: 0.8122 S12: -1.4189 S13: -1.0247 REMARK 3 S21: 1.5099 S22: -0.0413 S23: -0.2521 REMARK 3 S31: 1.0260 S32: -0.9486 S33: -0.3381 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 91:94) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9169 -1.0470 6.0762 REMARK 3 T TENSOR REMARK 3 T11: 2.0048 T22: 1.2296 REMARK 3 T33: 0.9829 T12: 0.2308 REMARK 3 T13: 0.1107 T23: 0.1140 REMARK 3 L TENSOR REMARK 3 L11: 3.4064 L22: 5.7131 REMARK 3 L33: 0.0835 L12: -3.9624 REMARK 3 L13: -0.5491 L23: 0.5004 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: 0.0241 S13: -1.2991 REMARK 3 S21: 2.8329 S22: -0.9028 S23: 0.3362 REMARK 3 S31: -0.7114 S32: 0.4770 S33: 0.6464 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1290065296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10933 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 62.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5FJC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM NA-CACODYLATE (PH 7.0), 80 MM REMARK 280 KCL, 50 MM BACL2, 12 MM SPERMINE-HCL, 12% (V/V) MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.67950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.08500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.01925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.08500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.33975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.08500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.08500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.01925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.08500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.08500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.33975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.67950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -244.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 BA BA A1096 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2001 LIES ON A SPECIAL POSITION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1105 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 1 OP2 REMARK 620 2 G A 1 N7 75.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1110 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 5 O4 REMARK 620 2 U A 88 O4 83.1 REMARK 620 3 G A 89 O6 60.0 69.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1106 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 10 OP2 REMARK 620 2 U A 64 OP2 87.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1100 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 50 O6 REMARK 620 2 G A 50 N7 57.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1097 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 64 O2' REMARK 620 2 U A 64 O2 70.2 REMARK 620 3 U A 67 O4 122.0 135.6 REMARK 620 4 HOH A2002 O 58.8 81.0 74.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1108 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 71 O6 REMARK 620 2 G A 79 O6 71.7 REMARK 620 3 U A 80 O4 68.3 62.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1098 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 74 O6 REMARK 620 2 G A 74 N7 68.9 REMARK 620 3 HOH A2003 O 51.7 115.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1109 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 81 O4 REMARK 620 2 G A 82 O6 67.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1099 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 86 N7 REMARK 620 2 G A 86 O6 58.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1095 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1096 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1098 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1099 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FJC RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT C-2BU REMARK 900 RELATED ID: 5FK1 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UG REMARK 900 RELATED ID: 5FK2 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GG REMARK 900 RELATED ID: 5FK3 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CC REMARK 900 RELATED ID: 5FK4 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UU REMARK 900 RELATED ID: 5FK5 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS AA REMARK 999 REMARK 999 SEQUENCE REMARK 999 A94G MUTATION DBREF 5FK6 A 1 94 PDB 5FK6 5FK6 1 94 SEQRES 1 A 94 G G C U U A U C A A G A G SEQRES 2 A 94 A G G G A G A G C G A C U SEQRES 3 A 94 G G C G C G A A G A C C C SEQRES 4 A 94 C C G G C A A C C A G A A SEQRES 5 A 94 A U G G U G C C A A U U C SEQRES 6 A 94 C U G C A G C G G A A A C SEQRES 7 A 94 G U U G A A A G A U G A G SEQRES 8 A 94 C C A HET SAM A1095 27 HET BA A1096 1 HET BA A1097 1 HET BA A1098 1 HET BA A1099 1 HET BA A1100 1 HET BA A1101 1 HET BA A1102 1 HET BA A1103 1 HET BA A1104 1 HET BA A1105 1 HET BA A1106 1 HET BA A1107 1 HET K A1108 1 HET K A1109 1 HET K A1110 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BA BARIUM ION HETNAM K POTASSIUM ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 BA 12(BA 2+) FORMUL 15 K 3(K 1+) FORMUL 18 HOH *3(H2 O) LINK OP2 G A 1 BA BA A1105 1555 1555 3.37 LINK N7 G A 1 BA BA A1105 1555 1555 3.02 LINK O4 U A 5 K K A1110 1555 1555 3.38 LINK OP2 A A 10 BA BA A1106 1555 1555 2.98 LINK O6 G A 11 BA BA A1101 1555 1555 2.80 LINK O6 G A 43 BA BA A1103 1555 1555 3.37 LINK O6 G A 50 BA BA A1100 1555 1555 3.44 LINK N7 G A 50 BA BA A1100 1555 1555 2.90 LINK O2' U A 64 BA BA A1097 1555 1555 2.85 LINK O2 U A 64 BA BA A1097 1555 1555 3.35 LINK OP2 U A 64 BA BA A1106 1555 1555 3.52 LINK O4 U A 67 BA BA A1097 1555 1555 3.09 LINK O6 G A 71 K K A1108 1555 1555 3.26 LINK O6 G A 74 BA BA A1098 1555 1555 2.69 LINK N7 G A 74 BA BA A1098 1555 1555 2.76 LINK O6 G A 79 K K A1108 1555 1555 3.38 LINK O4 U A 80 K K A1108 1555 1555 2.92 LINK O4 U A 81 K K A1109 1555 1555 3.29 LINK O6 G A 82 K K A1109 1555 1555 3.10 LINK N7 G A 86 BA BA A1099 1555 1555 3.12 LINK O6 G A 86 BA BA A1099 1555 1555 3.20 LINK O4 U A 88 K K A1110 1555 1555 3.41 LINK O6 G A 89 K K A1110 1555 1555 3.25 LINK BA BA A1097 O HOH A2002 1555 1555 2.59 LINK BA BA A1098 O HOH A2003 1555 1555 2.73 SITE 1 AC1 12 A A 6 U A 7 C A 8 G A 11 SITE 2 AC1 12 A A 45 C A 47 U A 57 G A 58 SITE 3 AC1 12 C A 59 A A 87 U A 88 BA A1101 SITE 1 AC2 1 HOH A2001 SITE 1 AC3 3 U A 64 U A 67 HOH A2002 SITE 1 AC4 2 G A 74 HOH A2003 SITE 1 AC5 1 G A 86 SITE 1 AC6 1 G A 50 SITE 1 AC7 2 G A 11 SAM A1095 SITE 1 AC8 1 G A 17 SITE 1 AC9 2 G A 42 G A 43 SITE 1 BC1 1 G A 55 SITE 1 BC2 1 G A 1 SITE 1 BC3 3 A A 10 G A 11 U A 64 SITE 1 BC4 1 G A 1 SITE 1 BC5 4 A A 70 G A 71 G A 79 U A 80 SITE 1 BC6 2 U A 81 G A 82 SITE 1 BC7 4 U A 4 U A 5 U A 88 G A 89 CRYST1 62.170 62.170 153.359 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006521 0.00000