HEADER LIGASE 19-NOV-15 5FOD TITLE CRYSTAL STRUCTURE OF THE P.FALCIPARUM CYTOSOLIC LEUCYL-TRNA SYNTHETASE TITLE 2 EDITING DOMAIN (SPACE GROUP P1) CONTAINING DELETIONS OF INSERTIONS 1 TITLE 3 AND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EDITING DOMAIN, UNP RESIDUES 274-329,361-474,521-687; COMPND 5 EC: 6.1.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3 RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS LIGASE, P.FALCIPARUM, LEUCINE-TRNA LIGASE (LEURS) ACTIVITY, ATP + L- KEYWDS 2 LEUCINE + TRNA(LEUCINE) GIVES AMP + DIPHOSPHATE + L-LEUCYL- KEYWDS 3 TRNA(LEUCINE), AMINOACYL-TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS, KEYWDS 4 NOVEL BORON INHIBITORS OF LEURS EXPDTA X-RAY DIFFRACTION AUTHOR A.PALENCIA,E.SONOIKI,D.GUO,V.AHYONG,C.DONG,X.LI,V.S.HERNANDEZ,J.GUT, AUTHOR 2 J.LEGAC,R.COOPER,M.R.K.ALLEY,Y.R.FREUND,J.DERISI,S.CUSACK, AUTHOR 3 P.J.ROSENTHAL REVDAT 4 01-MAY-24 5FOD 1 REMARK REVDAT 3 27-SEP-17 5FOD 1 REMARK REVDAT 2 10-AUG-16 5FOD 1 JRNL REVDAT 1 22-JUN-16 5FOD 0 JRNL AUTH E.SONOIKI,A.PALENCIA,D.GUO,V.AHYONG,C.DONG,X.LI, JRNL AUTH 2 V.S.HERNANDEZ,Y.K.ZHANG,W.CHOI,J.GUT,J.LEGAC,R.COOPER, JRNL AUTH 3 M.R.ALLEY,Y.R.FREUND,J.DERISI,S.CUSACK,P.J.ROSENTHAL JRNL TITL ANTI-MALARIAL BENZOXABOROLES TARGET P. FALCIPARUM JRNL TITL 2 LEUCYL-TRNA SYNTHETASE. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 60 4886 2016 JRNL REFN ISSN 0066-4804 JRNL PMID 27270277 JRNL DOI 10.1128/AAC.00820-16 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 59030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 238 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5093 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : -0.83000 REMARK 3 B23 (A**2) : -0.43000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.950 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5232 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4977 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7050 ; 1.607 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11534 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 6.252 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;36.207 ;25.873 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1009 ;14.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.518 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 768 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5851 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1181 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2486 ; 2.573 ; 3.119 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2485 ; 2.566 ; 3.118 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3101 ; 3.703 ; 4.656 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2746 ; 3.405 ; 3.576 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. PRESENCE OF NCS REMARK 4 REMARK 4 5FOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PLASMODIUM KNOWLESI LEURS EDITING DOMAIN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 20% (W/V) PEG REMARK 280 10000, AND 8% ETHYLENEGLYCOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 MET A 271 REMARK 465 LYS A 272 REMARK 465 ILE A 308 REMARK 465 GLU A 309 REMARK 465 LYS A 310 REMARK 465 LYS A 311 REMARK 465 GLU A 312 REMARK 465 ALA A 313 REMARK 465 PRO A 314 REMARK 465 ASN A 315 REMARK 465 ASN A 316 REMARK 465 ASN A 317 REMARK 465 ASN A 318 REMARK 465 ASN A 319 REMARK 465 LYS A 320 REMARK 465 ILE A 321 REMARK 465 ASN A 322 REMARK 465 ASN A 323 REMARK 465 ASN A 324 REMARK 465 LYS A 325 REMARK 465 ILE A 326 REMARK 465 ASN A 327 REMARK 465 TYR A 428 REMARK 465 GLY A 429 REMARK 465 ASP A 430 REMARK 465 LYS A 431 REMARK 465 SER A 432 REMARK 465 TYR A 433 REMARK 465 VAL A 434 REMARK 465 ASN A 435 REMARK 465 ASN A 472 REMARK 465 LYS A 473 REMARK 465 ASN A 519 REMARK 465 GLY A 520 REMARK 465 ASN A 521 REMARK 465 LEU A 522 REMARK 465 ASP A 523 REMARK 465 GLY B 269 REMARK 465 ALA B 270 REMARK 465 MET B 271 REMARK 465 LYS B 272 REMARK 465 SER B 273 REMARK 465 ILE B 308 REMARK 465 GLU B 309 REMARK 465 LYS B 310 REMARK 465 LYS B 311 REMARK 465 GLU B 312 REMARK 465 ALA B 313 REMARK 465 PRO B 314 REMARK 465 ASN B 315 REMARK 465 ASN B 316 REMARK 465 ASN B 317 REMARK 465 ASN B 318 REMARK 465 ASN B 319 REMARK 465 LYS B 320 REMARK 465 ILE B 321 REMARK 465 ASN B 322 REMARK 465 ASN B 323 REMARK 465 ASN B 324 REMARK 465 LYS B 325 REMARK 465 ILE B 326 REMARK 465 ASN B 327 REMARK 465 GLY B 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 598 O HOH A 2072 2.17 REMARK 500 OG1 THR B 557 OH TYR B 633 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 564 -141.59 50.59 REMARK 500 GLU A 615 -28.99 85.25 REMARK 500 ASN B 379 125.85 -171.74 REMARK 500 ASN B 472 11.73 54.46 REMARK 500 SER B 564 -137.26 41.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2082 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B2083 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1688 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FO4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P.FALCIPARUM CYTOSOLIC LEUCYL- TRNA REMARK 900 SYNTHETASE EDITING DOMAIN (SPACE GROUP P1) REMARK 900 RELATED ID: 5FOC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P.FALCIPARUM CYTOSOLIC LEUCYL- TRNA REMARK 900 SYNTHETASE EDITING DOMAIN (SPACE GROUP P21) REMARK 900 RELATED ID: 5FOF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P.KNOWLESI CYTOSOLIC LEUCYL- TRNA REMARK 900 SYNTHETASE EDITING DOMAIN REMARK 900 RELATED ID: 5FOG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HTE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL- REMARK 900 TRNA SYNTHETASE EDITING DOMAIN COMPLEX WITH A POST-TRANSFER EDITING REMARK 900 ANALOGUE OF NORVALINE (NV2AA) REMARK 900 RELATED ID: 5FOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL- REMARK 900 TRNA SYNTHETASE EDITING DOMAIN COMPLEX WITH A POST-TRANSFER EDITING REMARK 900 ANALOGUE OF ISOEUCINE (ILE2AA) REMARK 900 RELATED ID: 5FOM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL- REMARK 900 TRNA SYNTHETASE EDITING DOMAIN COMPLEX WITH THE ADDUCT AMP-AN6426 REMARK 900 RELATED ID: 5FON RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL- REMARK 900 TRNA SYNTHETASE EDITING DOMAIN (APO STRUCTURE) DBREF 5FOD A 272 327 UNP C6KT64 C6KT64_PLAF7 272 327 DBREF 5FOD A 361 473 UNP C6KT64 C6KT64_PLAF7 361 473 DBREF 5FOD A 519 687 UNP C6KT64 C6KT64_PLAF7 519 687 DBREF 5FOD B 272 327 UNP C6KT64 C6KT64_PLAF7 272 327 DBREF 5FOD B 361 473 UNP C6KT64 C6KT64_PLAF7 361 473 DBREF 5FOD B 519 687 UNP C6KT64 C6KT64_PLAF7 519 687 SEQADV 5FOD GLY A 269 UNP C6KT64 EXPRESSION TAG SEQADV 5FOD ALA A 270 UNP C6KT64 EXPRESSION TAG SEQADV 5FOD MET A 271 UNP C6KT64 EXPRESSION TAG SEQADV 5FOD SER A 273 UNP C6KT64 CYS 273 ENGINEERED MUTATION SEQADV 5FOD GLY A 360 UNP C6KT64 INSERTION SEQADV 5FOD GLY A 520 UNP C6KT64 INSERTION SEQADV 5FOD GLY B 269 UNP C6KT64 EXPRESSION TAG SEQADV 5FOD ALA B 270 UNP C6KT64 EXPRESSION TAG SEQADV 5FOD MET B 271 UNP C6KT64 EXPRESSION TAG SEQADV 5FOD SER B 273 UNP C6KT64 CYS 273 ENGINEERED MUTATION SEQADV 5FOD GLY B 360 UNP C6KT64 INSERTION SEQADV 5FOD GLY B 520 UNP C6KT64 INSERTION SEQRES 1 A 342 GLY ALA MET LYS SER GLN GLU TYR THR LEU ILE LYS ILE SEQRES 2 A 342 PHE VAL SER ASN VAL LYS ASP PHE TYR SER ILE PHE MET SEQRES 3 A 342 ASN SER ILE ARG SER SER GLN SER VAL LEU ASN ALA CYS SEQRES 4 A 342 ILE GLU LYS LYS GLU ALA PRO ASN ASN ASN ASN ASN LYS SEQRES 5 A 342 ILE ASN ASN ASN LYS ILE ASN GLY THR PHE PHE THR ASP SEQRES 6 A 342 PHE GLU LYS GLY GLU GLU ASP LEU LYS ASN LYS ILE TRP SEQRES 7 A 342 ASN GLU ASP PHE PHE VAL LYS ASP LYS LYS VAL ILE PHE SEQRES 8 A 342 LEU GLY SER THR LEU LYS PRO GLU THR ALA TYR GLY GLN SEQRES 9 A 342 ASN TYR THR PHE ILE ASN PRO ASN GLU TYR TYR TYR LEU SEQRES 10 A 342 THR LEU GLY PHE ASP LYS GLN ASN LEU HIS TYR GLY ASP SEQRES 11 A 342 LYS SER TYR VAL ASN ASN ILE MET THR LYS GLU GLU ILE SEQRES 12 A 342 ILE ASN SER CYS PRO ASN ILE TYR VAL CYS SER GLU ASN SEQRES 13 A 342 SER LEU TYR ASN LEU ALA TYR GLN GLY ILE ILE PRO LEU SEQRES 14 A 342 LEU LYS ASN LYS ASN GLY ASN LEU ASP ASP VAL PHE ILE SEQRES 15 A 342 LEU ASN LYS ILE LYS GLY GLU HIS PHE VAL GLY LEU GLU SEQRES 16 A 342 THR TYR THR ASN ILE SER LYS ILE LYS ASN LEU TYR ILE SEQRES 17 A 342 LEU PRO MET THR THR ILE LYS MET ASN ILE SER THR GLY SEQRES 18 A 342 ILE VAL PRO CYS VAL SER SER ASP SER THR ASP ASP TYR SEQRES 19 A 342 ALA CYS LEU GLU ASP ILE ARG LYS LYS LYS ASN TYR TYR SEQRES 20 A 342 CYS GLU LYS TYR ASN LEU LYS GLU GLU GLN LEU LYS ASN SEQRES 21 A 342 ASN SER GLU SER CYS ILE GLU LEU PRO GLU ILE GLY ASN SEQRES 22 A 342 ASN THR GLY LYS TYR TYR TYR GLU LYS GLU LYS VAL SER SEQRES 23 A 342 SER TYR LYS ASP VAL LYS LEU GLN LYS ILE LYS GLU VAL SEQRES 24 A 342 LEU TYR LYS LYS GLN TYR PHE GLU GLY ILE MET THR VAL SEQRES 25 A 342 ASP PRO TYR LYS GLY MET LYS THR PHE ASN CYS ARG LYS SEQRES 26 A 342 LEU ALA LYS GLN ASN ILE ILE ARG ASN LEU ASP GLY PHE SEQRES 27 A 342 LEU TYR SER GLU SEQRES 1 B 342 GLY ALA MET LYS SER GLN GLU TYR THR LEU ILE LYS ILE SEQRES 2 B 342 PHE VAL SER ASN VAL LYS ASP PHE TYR SER ILE PHE MET SEQRES 3 B 342 ASN SER ILE ARG SER SER GLN SER VAL LEU ASN ALA CYS SEQRES 4 B 342 ILE GLU LYS LYS GLU ALA PRO ASN ASN ASN ASN ASN LYS SEQRES 5 B 342 ILE ASN ASN ASN LYS ILE ASN GLY THR PHE PHE THR ASP SEQRES 6 B 342 PHE GLU LYS GLY GLU GLU ASP LEU LYS ASN LYS ILE TRP SEQRES 7 B 342 ASN GLU ASP PHE PHE VAL LYS ASP LYS LYS VAL ILE PHE SEQRES 8 B 342 LEU GLY SER THR LEU LYS PRO GLU THR ALA TYR GLY GLN SEQRES 9 B 342 ASN TYR THR PHE ILE ASN PRO ASN GLU TYR TYR TYR LEU SEQRES 10 B 342 THR LEU GLY PHE ASP LYS GLN ASN LEU HIS TYR GLY ASP SEQRES 11 B 342 LYS SER TYR VAL ASN ASN ILE MET THR LYS GLU GLU ILE SEQRES 12 B 342 ILE ASN SER CYS PRO ASN ILE TYR VAL CYS SER GLU ASN SEQRES 13 B 342 SER LEU TYR ASN LEU ALA TYR GLN GLY ILE ILE PRO LEU SEQRES 14 B 342 LEU LYS ASN LYS ASN GLY ASN LEU ASP ASP VAL PHE ILE SEQRES 15 B 342 LEU ASN LYS ILE LYS GLY GLU HIS PHE VAL GLY LEU GLU SEQRES 16 B 342 THR TYR THR ASN ILE SER LYS ILE LYS ASN LEU TYR ILE SEQRES 17 B 342 LEU PRO MET THR THR ILE LYS MET ASN ILE SER THR GLY SEQRES 18 B 342 ILE VAL PRO CYS VAL SER SER ASP SER THR ASP ASP TYR SEQRES 19 B 342 ALA CYS LEU GLU ASP ILE ARG LYS LYS LYS ASN TYR TYR SEQRES 20 B 342 CYS GLU LYS TYR ASN LEU LYS GLU GLU GLN LEU LYS ASN SEQRES 21 B 342 ASN SER GLU SER CYS ILE GLU LEU PRO GLU ILE GLY ASN SEQRES 22 B 342 ASN THR GLY LYS TYR TYR TYR GLU LYS GLU LYS VAL SER SEQRES 23 B 342 SER TYR LYS ASP VAL LYS LEU GLN LYS ILE LYS GLU VAL SEQRES 24 B 342 LEU TYR LYS LYS GLN TYR PHE GLU GLY ILE MET THR VAL SEQRES 25 B 342 ASP PRO TYR LYS GLY MET LYS THR PHE ASN CYS ARG LYS SEQRES 26 B 342 LEU ALA LYS GLN ASN ILE ILE ARG ASN LEU ASP GLY PHE SEQRES 27 B 342 LEU TYR SER GLU HET EDO B1688 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *175(H2 O) HELIX 1 1 ASN A 285 LEU A 304 1 20 HELIX 2 2 GLU A 370 TRP A 378 1 9 HELIX 3 3 ASN A 379 LYS A 385 1 7 HELIX 4 4 LYS A 397 GLN A 404 5 8 HELIX 5 5 THR A 439 CYS A 447 1 9 HELIX 6 6 SER A 454 ASN A 456 5 3 HELIX 7 7 SER A 457 GLN A 464 1 8 HELIX 8 8 GLU A 534 VAL A 537 5 4 HELIX 9 9 SER A 575 LYS A 588 1 14 HELIX 10 10 LYS A 588 TYR A 596 1 9 HELIX 11 11 LYS A 599 LEU A 603 5 5 HELIX 12 12 ASN A 619 GLU A 628 1 10 HELIX 13 13 LYS A 637 GLY A 653 1 17 HELIX 14 14 LYS A 664 ASN A 679 1 16 HELIX 15 15 ASN B 285 LEU B 304 1 20 HELIX 16 16 GLU B 370 TRP B 378 1 9 HELIX 17 17 ASN B 379 LYS B 385 1 7 HELIX 18 18 LYS B 397 GLN B 404 5 8 HELIX 19 19 GLN B 424 GLY B 429 5 6 HELIX 20 20 THR B 439 CYS B 447 1 9 HELIX 21 21 SER B 457 GLN B 464 1 8 HELIX 22 22 GLU B 534 VAL B 537 5 4 HELIX 23 23 SER B 575 LYS B 588 1 14 HELIX 24 24 LYS B 588 TYR B 596 1 9 HELIX 25 25 LYS B 599 LYS B 604 5 6 HELIX 26 26 ASN B 619 GLU B 628 1 10 HELIX 27 27 LYS B 637 GLY B 653 1 17 HELIX 28 28 LYS B 664 ASN B 679 1 16 SHEET 1 AA 9 ILE A 527 LYS A 532 0 SHEET 2 AA 9 TYR A 414 GLY A 420 -1 O TYR A 415 N ILE A 531 SHEET 3 AA 9 ASN A 449 CYS A 453 -1 O ASN A 449 N GLY A 420 SHEET 4 AA 9 LYS A 388 THR A 395 1 O LYS A 388 N ILE A 450 SHEET 5 AA 9 GLN A 274 VAL A 283 -1 O THR A 277 N THR A 395 SHEET 6 AA 9 GLU A 540 TYR A 542 -1 O TYR A 542 N PHE A 282 SHEET 7 AA 9 LEU A 551 PRO A 555 -1 O LEU A 551 N THR A 541 SHEET 8 AA 9 TYR A 406 ILE A 409 1 O THR A 407 N LEU A 554 SHEET 9 AA 9 ILE A 567 CYS A 570 -1 O VAL A 568 N PHE A 408 SHEET 1 AB 6 ILE A 527 LYS A 532 0 SHEET 2 AB 6 TYR A 414 GLY A 420 -1 O TYR A 415 N ILE A 531 SHEET 3 AB 6 ASN A 449 CYS A 453 -1 O ASN A 449 N GLY A 420 SHEET 4 AB 6 LYS A 388 THR A 395 1 O LYS A 388 N ILE A 450 SHEET 5 AB 6 GLN A 274 VAL A 283 -1 O THR A 277 N THR A 395 SHEET 6 AB 6 GLY A 682 GLU A 687 -1 O PHE A 683 N LEU A 278 SHEET 1 AC 2 ILE A 437 MET A 438 0 SHEET 2 AC 2 LEU A 469 LEU A 470 1 O LEU A 469 N MET A 438 SHEET 1 AD 2 ILE A 611 GLU A 612 0 SHEET 2 AD 2 ILE A 654 MET A 655 -1 O ILE A 654 N GLU A 612 SHEET 1 BA 9 ASN B 529 LYS B 532 0 SHEET 2 BA 9 TYR B 414 GLY B 420 -1 O TYR B 415 N ILE B 531 SHEET 3 BA 9 ASN B 449 CYS B 453 -1 O ASN B 449 N GLY B 420 SHEET 4 BA 9 LYS B 388 THR B 395 1 O LYS B 388 N ILE B 450 SHEET 5 BA 9 GLU B 275 VAL B 283 -1 O THR B 277 N THR B 395 SHEET 6 BA 9 GLU B 540 TYR B 542 -1 O TYR B 542 N PHE B 282 SHEET 7 BA 9 LEU B 551 PRO B 555 1 O LEU B 551 N THR B 541 SHEET 8 BA 9 TYR B 406 ILE B 409 1 O THR B 407 N LEU B 554 SHEET 9 BA 9 ILE B 567 CYS B 570 1 O VAL B 568 N PHE B 408 SHEET 1 BB 6 ASN B 529 LYS B 532 0 SHEET 2 BB 6 TYR B 414 GLY B 420 -1 O TYR B 415 N ILE B 531 SHEET 3 BB 6 ASN B 449 CYS B 453 -1 O ASN B 449 N GLY B 420 SHEET 4 BB 6 LYS B 388 THR B 395 1 O LYS B 388 N ILE B 450 SHEET 5 BB 6 GLU B 275 VAL B 283 -1 O THR B 277 N THR B 395 SHEET 6 BB 6 GLY B 682 SER B 686 -1 O PHE B 683 N LEU B 278 SHEET 1 BC 2 ILE B 437 MET B 438 0 SHEET 2 BC 2 LEU B 469 LEU B 470 1 O LEU B 469 N MET B 438 SHEET 1 BD 2 ILE B 611 GLU B 612 0 SHEET 2 BD 2 ILE B 654 MET B 655 -1 O ILE B 654 N GLU B 612 CISPEP 1 ASP A 658 PRO A 659 0 1.72 CISPEP 2 ASP B 658 PRO B 659 0 4.28 SITE 1 AC1 3 THR B 395 LEU B 396 HOH B2081 CRYST1 48.600 53.100 62.700 88.40 73.70 89.80 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020576 -0.000072 -0.006017 0.00000 SCALE2 0.000000 0.018833 -0.000529 0.00000 SCALE3 0.000000 0.000000 0.016623 0.00000