HEADER LIGASE 24-NOV-15 5FOM TITLE CRYSTAL STRUCTURE OF THE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL-TRNA TITLE 2 SYNTHETASE EDITING DOMAIN COMPLEX WITH THE ADDUCT AMP-AN6426 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EDITING DOMAIN; COMPND 5 EC: 6.1.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM MURIS; SOURCE 3 ORGANISM_TAXID: 441375; SOURCE 4 STRAIN: RN66; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM-11 KEYWDS LIGASE, CRYPTOSPORIDIUM, LEUCINE-TRNA LIGASE (LEURS) ACTIVITY, ATP + KEYWDS 2 L-LEUCINE + TRNA(LEUCINE) GIVE AMP + DIPHOSPHATE + L-LEUCYL- KEYWDS 3 TRNA(LEUCINE), POST-TRANSFER EDITING ACTIVITY OF LEURS, AMINOACYL- KEYWDS 4 TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS, NOVEL BORON INHIBITORS OF THE KEYWDS 5 EDITING SITE OF LEURS EXPDTA X-RAY DIFFRACTION AUTHOR A.PALENCIA,R.J.LIU,M.LUKARSKA,J.GUT,A.BOUGDOUR,B.TOUQUET,E.D.WANG, AUTHOR 2 M.R.K.ALLEY,P.J.ROSENTHAL,M.A.HAKIMI,S.CUSACK REVDAT 5 10-JAN-24 5FOM 1 REMARK REVDAT 4 23-AUG-17 5FOM 1 REMARK REVDAT 3 05-OCT-16 5FOM 1 JRNL REVDAT 2 10-AUG-16 5FOM 1 JRNL REVDAT 1 03-AUG-16 5FOM 0 JRNL AUTH A.PALENCIA,R.LIU,M.LUKARSKA,J.GUT,A.BOUGDOUR,B.TOUQUET, JRNL AUTH 2 E.WANG,X.LI,M.R.K.ALLEY,Y.R.FREUND,P.J.ROSENTHAL,M.HAKIMI, JRNL AUTH 3 S.CUSACK JRNL TITL CRYPTOSPORIDIUM AND TOXOPLASMA PARASITES ARE INHIBITED BY A JRNL TITL 2 BENZOXABOROLE TARGETING LEUCYL-TRNA SYNTHETASE. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 60 5817 2016 JRNL REFN ISSN 0066-4804 JRNL PMID 27431220 JRNL DOI 10.1128/AAC.00873-16 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.59000 REMARK 3 B22 (A**2) : 3.59000 REMARK 3 B33 (A**2) : -7.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.146 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2281 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2203 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3089 ; 1.667 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5110 ; 0.927 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 6.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.741 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;15.278 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.893 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2462 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 466 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1094 ; 3.042 ; 5.267 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1093 ; 3.035 ; 5.267 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 4.364 ; 7.888 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 3.723 ; 5.734 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5FOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21974 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 60.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WFG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM/POTASSIUM PHOSPHATE PH REMARK 280 5.5. 20% GLYCEROL WAS USED AS CRYOPROTECTANT. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.65050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.53250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.53250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.47575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.53250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.53250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.82525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.53250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.53250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.47575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.53250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.53250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.82525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.65050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -83.65050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 251 REMARK 465 ALA A 252 REMARK 465 MET A 253 REMARK 465 VAL A 316 REMARK 465 ILE A 317 REMARK 465 PRO A 318 REMARK 465 TYR A 319 REMARK 465 ASP A 320 REMARK 465 ALA A 321 REMARK 465 LYS A 322 REMARK 465 THR A 323 REMARK 465 SER A 324 REMARK 465 ASP A 325 REMARK 465 GLY A 326 REMARK 465 VAL A 327 REMARK 465 LEU A 328 REMARK 465 CYS A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2027 O HOH A 2027 8554 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 400 -29.25 66.13 REMARK 500 LYS A 443 98.22 -62.28 REMARK 500 PRO A 467 -35.92 -39.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A2H A 1542 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1543 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FO4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P.FALCIPARUM CYTOSOLIC LEUCYL- TRNA REMARK 900 SYNTHETASE EDITING DOMAIN (SPACE GROUP P1) REMARK 900 RELATED ID: 5FOC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P.FALCIPARUM CYTOSOLIC LEUCYL- TRNA REMARK 900 SYNTHETASE EDITING DOMAIN (SPACE GROUP P21) REMARK 900 RELATED ID: 5FOD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P.FALCIPARUM CYTOSOLIC LEUCYL- TRNA REMARK 900 SYNTHETASE EDITING DOMAIN (SPACE GROUP P1) CONTAINING DELETIONS OF REMARK 900 INSERTIONS 1 AND 3 REMARK 900 RELATED ID: 5FOF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P.KNOWLESI CYTOSOLIC LEUCYL- TRNA REMARK 900 SYNTHETASE EDITING DOMAIN REMARK 900 RELATED ID: 5FOG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HTE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL- REMARK 900 TRNA SYNTHETASE EDITING DOMAIN COMPLEX WITH A POST-TRANSFER EDITING REMARK 900 ANALOGUE OF NORVALINE (NV2AA) REMARK 900 RELATED ID: 5FOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL- REMARK 900 TRNA SYNTHETASE EDITING DOMAIN COMPLEX WITH A POST-TRANSFER EDITING REMARK 900 ANALOGUE OF ISOEUCINE (ILE2AA) REMARK 900 RELATED ID: 5FON RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CRYPTOSPORIDIUM MURIS CYTOSOLIC LEUCYL- REMARK 900 TRNA SYNTHETASE EDITING DOMAIN (APO STRUCTURE) DBREF 5FOM A 254 541 UNP B6AA20 B6AA20_CRYMR 254 541 SEQADV 5FOM GLY A 251 UNP B6AA20 EXPRESSION TAG SEQADV 5FOM ALA A 252 UNP B6AA20 EXPRESSION TAG SEQADV 5FOM MET A 253 UNP B6AA20 EXPRESSION TAG SEQRES 1 A 291 GLY ALA MET GLY PRO GLN GLU TYR THR LEU ILE LYS LEU SEQRES 2 A 291 LYS ILE HIS LEU ILE PRO GLU PHE LEU GLY SER ILE VAL SEQRES 3 A 291 LYS GLY ARG GLU VAL PHE VAL VAL CYS ALA THR LEU ARG SEQRES 4 A 291 PRO GLU THR MET TYR GLY GLN THR ASN CYS TRP ILE LEU SEQRES 5 A 291 PRO ASP GLY GLU TYR ASP LEU VAL LEU ALA PHE ASP GLN SEQRES 6 A 291 VAL ILE PRO TYR ASP ALA LYS THR SER ASP GLY VAL LEU SEQRES 7 A 291 CYS LYS ILE PHE ASP LYS TYR GLU ASP THR MET LYS GLU SEQRES 8 A 291 CYS ASN THR VAL TYR ILE CYS SER GLU ARG SER ALA TYR SEQRES 9 A 291 ASN MET ALA TYR GLN GLY ILE VAL PRO LEU ILE HIS GLY SEQRES 10 A 291 ARG GLU GLN GLY VAL SER ASP LYS LEU LEU PRO ARG ILE SEQRES 11 A 291 VAL SER LEU GLY LYS VAL TYR GLY GLU GLN LEU ILE GLY SEQRES 12 A 291 THR PRO LEU SER ALA PRO MET THR PRO TYR SER LEU ILE SEQRES 13 A 291 PHE ILE LEU PRO MET PHE SER ILE SER MET GLU LYS GLY SEQRES 14 A 291 THR GLY ILE VAL THR SER VAL PRO SER ASP SER PRO ASP SEQRES 15 A 291 ASP TYR ALA ALA LEU ARG ASP ILE LYS THR LYS PRO LEU SEQRES 16 A 291 LEU ARG GLU LYS TYR SER ILE LYS ASP GLU TRP ILE LEU SEQRES 17 A 291 ASP PRO LEU GLU ILE ILE GLU VAL PRO GLY PHE GLY PHE SEQRES 18 A 291 MET THR ALA GLU LEU LEU CYS ASN GLN TYR LYS ILE GLN SEQRES 19 A 291 SER GLN ASN ASP SER ALA LYS LEU LYS GLN ALA LYS GLU SEQRES 20 A 291 GLU ILE TYR LYS LYS GLU PHE TYR GLU GLY ILE LEU ILE SEQRES 21 A 291 ARG GLY LYS TYR SER GLY MET LYS ILE CYS ASP ALA LYS SEQRES 22 A 291 GLU LEU ILE ARG GLU SER LEU ILE LYS ASP GLY TYR ALA SEQRES 23 A 291 LEU ILE TYR LEU GLU HET A2H A1542 38 HET PO4 A1543 5 HETNAM A2H 4-CHLORO-3-AMINOMETHYL-7-[ETHOXY]-3H-BENZO[C][1, HETNAM 2 A2H 2]OXABOROL-1-OL MODIFIED ADENOSINE HETNAM PO4 PHOSPHATE ION FORMUL 2 A2H C20 H22 B CL N6 O9 P 3- FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *51(H2 O) HELIX 1 1 PRO A 269 LYS A 277 1 9 HELIX 2 2 ARG A 289 GLN A 296 5 8 HELIX 3 3 LYS A 334 CYS A 342 1 9 HELIX 4 4 SER A 349 GLN A 359 1 11 HELIX 5 5 GLU A 389 ILE A 392 5 4 HELIX 6 6 SER A 430 LYS A 443 1 14 HELIX 7 7 LYS A 443 TYR A 450 1 8 HELIX 8 8 LYS A 453 ILE A 457 5 5 HELIX 9 9 MET A 472 TYR A 481 1 10 HELIX 10 10 ASP A 488 GLY A 507 1 20 HELIX 11 11 LYS A 518 ASP A 533 1 16 SHEET 1 AA 9 SER A 382 TYR A 387 0 SHEET 2 AA 9 GLU A 306 ALA A 312 -1 O TYR A 307 N VAL A 386 SHEET 3 AA 9 THR A 344 CYS A 348 -1 O THR A 344 N ALA A 312 SHEET 4 AA 9 GLU A 280 THR A 287 1 O GLU A 280 N VAL A 345 SHEET 5 AA 9 GLU A 257 ILE A 265 -1 O THR A 259 N THR A 287 SHEET 6 AA 9 PRO A 395 SER A 397 -1 O SER A 397 N LYS A 264 SHEET 7 AA 9 ILE A 406 PRO A 410 -1 O ILE A 406 N LEU A 396 SHEET 8 AA 9 ASN A 298 ILE A 301 1 O CYS A 299 N LEU A 409 SHEET 9 AA 9 ILE A 422 SER A 425 -1 O VAL A 423 N TRP A 300 SHEET 1 AB 6 SER A 382 TYR A 387 0 SHEET 2 AB 6 GLU A 306 ALA A 312 -1 O TYR A 307 N VAL A 386 SHEET 3 AB 6 THR A 344 CYS A 348 -1 O THR A 344 N ALA A 312 SHEET 4 AB 6 GLU A 280 THR A 287 1 O GLU A 280 N VAL A 345 SHEET 5 AB 6 GLU A 257 ILE A 265 -1 O THR A 259 N THR A 287 SHEET 6 AB 6 ALA A 536 LEU A 540 -1 O LEU A 537 N LEU A 260 SHEET 1 AC 2 LEU A 364 HIS A 366 0 SHEET 2 AC 2 PRO A 378 ILE A 380 -1 O ARG A 379 N ILE A 365 SHEET 1 AD 2 ILE A 464 GLU A 465 0 SHEET 2 AD 2 ILE A 508 LEU A 509 -1 O ILE A 508 N GLU A 465 CISPEP 1 GLY A 254 PRO A 255 0 4.39 SITE 1 AC1 18 TYR A 258 ALA A 286 THR A 287 LEU A 288 SITE 2 AC1 18 ARG A 289 THR A 292 ILE A 414 SER A 415 SITE 3 AC1 18 LYS A 418 VAL A 423 THR A 424 VAL A 426 SITE 4 AC1 18 ASP A 429 SER A 430 ASP A 433 LYS A 496 SITE 5 AC1 18 HOH A2008 HOH A2039 SITE 1 AC2 5 TYR A 335 ILE A 380 VAL A 381 SER A 382 SITE 2 AC2 5 ARG A 511 CRYST1 65.065 65.065 167.301 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005977 0.00000