HEADER LIGASE 02-DEC-15 5FPO TITLE STRUCTURE OF BACTERIAL DNA LIGASE WITH SMALL-MOLECULE LIGAND 1H- TITLE 2 INDAZOL-7-AMINE (AT4213) IN AN ALTERNATE BINDING SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE NAD(+); COMPND 5 EC: 6.5.1.2, 6.5.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET17 KEYWDS LIGASE, ANTIBIOTIC DESIGN, PROTEIN-LIGAND COMPLEX, FRAGMENT KEYWDS 2 SCREENING, ALTERNATE BINDING SITE, AT4213. EXPDTA X-RAY DIFFRACTION AUTHOR H.JHOTI,R.F.LUDLOW,P.PATHURI,H.K.SAINI,I.J.TICKLE,D.TISI,M.VERDONK, AUTHOR 2 P.A.WILLIAMS REVDAT 3 10-JAN-24 5FPO 1 REMARK REVDAT 2 13-JAN-16 5FPO 1 JRNL REVDAT 1 23-DEC-15 5FPO 0 JRNL AUTH R.F.LUDLOW,M.L.VERDONK,H.K.SAINI,I.J.TICKLE,H.JHOTI JRNL TITL DETECTION OF SECONDARY BINDING SITES IN PROTEINS USING JRNL TITL 2 FRAGMENT SCREENING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 15910 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 26655740 JRNL DOI 10.1073/PNAS.1518946112 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.HOWARD,N.AMIN,A.B.BENOWITZ,E.CHIARPARIN,H.CUI,X.DENG, REMARK 1 AUTH 2 T.D.HEIGHTMAN,D.J.HOLMES,A.HOPKINS,J.HUANG,Q.JIN, REMARK 1 AUTH 3 C.KREATSOULAS,A.C.L.MARTIN,F.MASSEY,L.MCCLOSKEY, REMARK 1 AUTH 4 P.N.MORTENSON,P.PATHURI,D.TISI,P.A.WILLIAMS REMARK 1 TITL FRAGMENT-BASED DISCOVERY OF 6-AZAINDAZOLES AS INHIBITORS OF REMARK 1 TITL 2 BACTERIAL DNA LIGASE. REMARK 1 REF ACS MED.CHEM.LETT. V. 4 1208 2013 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 24900632 REMARK 1 DOI 10.1021/ML4003277 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 28309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.42 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2613 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2267 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2496 REMARK 3 BIN R VALUE (WORKING SET) : 0.2246 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 117 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.90450 REMARK 3 B22 (A**2) : -5.00870 REMARK 3 B33 (A**2) : 2.10420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.278 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.158 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.143 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.152 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.141 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.880 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2491 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3386 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 856 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 74 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 368 ; 16.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2491 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 319 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3077 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.98 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|3 - A|60 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.0518 18.1417 38.0240 REMARK 3 T TENSOR REMARK 3 T11: -0.1022 T22: 0.1033 REMARK 3 T33: -0.0620 T12: -0.0132 REMARK 3 T13: -0.0173 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.7142 L22: 1.0141 REMARK 3 L33: 1.1675 L12: 0.3786 REMARK 3 L13: -0.2472 L23: -0.0294 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0457 S13: 0.0617 REMARK 3 S21: 0.0035 S22: -0.0679 S23: -0.0233 REMARK 3 S31: 0.0119 S32: -0.0442 S33: 0.0768 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|61 - A|309 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.9737 18.4099 15.1726 REMARK 3 T TENSOR REMARK 3 T11: -0.0952 T22: -0.0562 REMARK 3 T33: -0.0384 T12: 0.0241 REMARK 3 T13: -0.0121 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.7700 L22: 0.5188 REMARK 3 L33: 1.0723 L12: 0.4848 REMARK 3 L13: -0.5399 L23: -0.1075 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.0558 S13: 0.0298 REMARK 3 S21: -0.0362 S22: 0.0526 S23: 0.0467 REMARK 3 S31: -0.0568 S32: -0.1328 S33: -0.0237 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS WERE DELETED. REMARK 4 REMARK 4 5FPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29257 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 48.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CC5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M (NH4)2SO4. PROTEIN CONC. = 27.2 REMARK 280 MG/ML. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.94300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.94300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2029 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2032 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2059 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 186 REMARK 465 ALA A 310 REMARK 465 GLU A 311 REMARK 465 GLU A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 26 CA C O CB CG OD1 OD2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 HIS A 40 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 44 NZ REMARK 470 GLU A 47 CD OE1 OE2 REMARK 470 GLU A 65 OE1 OE2 REMARK 470 LYS A 72 CD CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 LYS A 93 CD CE NZ REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 104 CG OD1 ND2 REMARK 470 LYS A 157 CE NZ REMARK 470 ARG A 177 CD NE CZ NH1 NH2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 GLU A 187 OE1 OE2 REMARK 470 GLN A 188 CD OE1 NE2 REMARK 470 LYS A 211 CD CE NZ REMARK 470 LYS A 213 CE NZ REMARK 470 ARG A 230 CD NE CZ NH1 NH2 REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 GLU A 271 CD OE1 OE2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 ARG A 301 NH1 NH2 REMARK 470 PRO A 309 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 309 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2009 DISTANCE = 6.46 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 1H-INDAZOL-7-AMINE (10L): ASTEX COMPOUND REGISTRY AT4213. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 10L A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 10L A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 10L A 1312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FP5 RELATED DB: PDB REMARK 900 STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 WITH SMALL- MOLECULE LIGAND REMARK 900 4-FLUOROBENZOIC ACID (AT222) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FP6 RELATED DB: PDB REMARK 900 STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 WITH SMALL- MOLECULE LIGAND REMARK 900 3-(4,7-DICHLORO-1H-INDOL-3-YL)PROP -2-YN-1-OL (AT17833) IN AN REMARK 900 ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPD RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND PYRAZINE-2-CARBOXAMIDE (AT513) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPE RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND 1H-1,2,4-TRIAZOL-3-AMINE ( AT485) IN AN ALTERNATE BINDING REMARK 900 SITE. REMARK 900 RELATED ID: 5FPM RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND 5-PHENYL-1,3,4-OXADIAZOLE-2- THIOL (AT809) IN AN ALTERNATE REMARK 900 BINDING SITE. REMARK 900 RELATED ID: 5FPN RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND 3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID (AT9084) IN AN REMARK 900 ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPR RELATED DB: PDB REMARK 900 STRUCTURE OF BACTERIAL DNA LIGASE WITH SMALL-MOLECULE LIGAND REMARK 900 PYRIMIDIN-2-AMINE (AT371) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPS RELATED DB: PDB REMARK 900 STRUCTURE OF HEPATITIS C VIRUS (HCV) FULL-LENGTH NS3 COMPLEX WITH REMARK 900 SMALL-MOLECULE LIGAND 3-AMINOBENZENE-1,2 -DICARBOXYLIC ACID (AT1246) REMARK 900 IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPT RELATED DB: PDB REMARK 900 STRUCTURE OF HEPATITIS C VIRUS (HCV) FULL-LENGTH NS3 COMPLEX WITH REMARK 900 SMALL-MOLECULE LIGAND 2-(1-METHYL-1H- INDOL-3-YL)ACETIC ACID REMARK 900 (AT3437) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPY RELATED DB: PDB REMARK 900 STRUCTURE OF HEPATITIS C VIRUS (HCV) FULL-LENGTH NS3 COMPLEX WITH REMARK 900 SMALL-MOLECULE LIGAND 5-BROMO-1-METHYL- 1H-INDOLE-2-CARBOXYLIC ACID REMARK 900 (AT21457) IN AN ALTERNATE BINDING SITE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 DELETION 313-355 C-TERM HIS TAG. DBREF 5FPO A 1 312 UNP Q9AIU7 DNLJ_STAAU 1 312 SEQADV 5FPO HIS A 313 UNP Q9AIU7 EXPRESSION TAG SEQADV 5FPO HIS A 314 UNP Q9AIU7 EXPRESSION TAG SEQADV 5FPO HIS A 315 UNP Q9AIU7 EXPRESSION TAG SEQADV 5FPO HIS A 316 UNP Q9AIU7 EXPRESSION TAG SEQADV 5FPO HIS A 317 UNP Q9AIU7 EXPRESSION TAG SEQADV 5FPO HIS A 318 UNP Q9AIU7 EXPRESSION TAG SEQRES 1 A 318 MET ALA ASP LEU SER SER ARG VAL ASN GLU LEU HIS ASP SEQRES 2 A 318 LEU LEU ASN GLN TYR SER TYR GLU TYR TYR VAL GLU ASP SEQRES 3 A 318 ASN PRO SER VAL PRO ASP SER GLU TYR ASP LYS LEU LEU SEQRES 4 A 318 HIS GLU LEU ILE LYS ILE GLU GLU GLU HIS PRO GLU TYR SEQRES 5 A 318 LYS THR VAL ASP SER PRO THR VAL ARG VAL GLY GLY GLU SEQRES 6 A 318 ALA GLN ALA SER PHE ASN LYS VAL ASN HIS ASP THR PRO SEQRES 7 A 318 MET LEU SER LEU GLY ASN ALA PHE ASN GLU ASP ASP LEU SEQRES 8 A 318 ARG LYS PHE ASP GLN ARG ILE ARG GLU GLN ILE GLY ASN SEQRES 9 A 318 VAL GLU TYR MET CYS GLU LEU LYS ILE ASP GLY LEU ALA SEQRES 10 A 318 VAL SER LEU LYS TYR VAL ASP GLY TYR PHE VAL GLN GLY SEQRES 11 A 318 LEU THR ARG GLY ASP GLY THR THR GLY GLU ASP ILE THR SEQRES 12 A 318 GLU ASN LEU LYS THR ILE HIS ALA ILE PRO LEU LYS MET SEQRES 13 A 318 LYS GLU PRO LEU ASN VAL GLU VAL ARG GLY GLU ALA TYR SEQRES 14 A 318 MET PRO ARG ARG SER PHE LEU ARG LEU ASN GLU GLU LYS SEQRES 15 A 318 GLU LYS ASN ASP GLU GLN LEU PHE ALA ASN PRO ARG ASN SEQRES 16 A 318 ALA ALA ALA GLY SER LEU ARG GLN LEU ASP SER LYS LEU SEQRES 17 A 318 THR ALA LYS ARG LYS LEU SER VAL PHE ILE TYR SER VAL SEQRES 18 A 318 ASN ASP PHE THR ASP PHE ASN ALA ARG SER GLN SER GLU SEQRES 19 A 318 ALA LEU ASP GLU LEU ASP LYS LEU GLY PHE THR THR ASN SEQRES 20 A 318 LYS ASN ARG ALA ARG VAL ASN ASN ILE ASP GLY VAL LEU SEQRES 21 A 318 GLU TYR ILE GLU LYS TRP THR SER GLN ARG GLU SER LEU SEQRES 22 A 318 PRO TYR ASP ILE ASP GLY ILE VAL ILE LYS VAL ASN ASP SEQRES 23 A 318 LEU ASP GLN GLN ASP GLU MET GLY PHE THR GLN LYS SER SEQRES 24 A 318 PRO ARG TRP ALA ILE ALA TYR LYS PHE PRO ALA GLU GLU SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET 10L A1310 17 HET 10L A1311 17 HET 10L A1312 17 HETNAM 10L 1H-INDAZOL-7-AMINE FORMUL 2 10L 3(C7 H7 N3) FORMUL 5 HOH *231(H2 O) HELIX 1 1 LEU A 4 VAL A 24 1 21 HELIX 2 2 PRO A 31 HIS A 49 1 19 HELIX 3 3 PRO A 50 LYS A 53 5 4 HELIX 4 4 SER A 57 GLY A 63 5 7 HELIX 5 5 ASN A 87 GLY A 103 1 17 HELIX 6 6 ILE A 142 LYS A 147 1 6 HELIX 7 7 PRO A 171 ASN A 185 1 15 HELIX 8 8 ASN A 192 ARG A 202 1 11 HELIX 9 9 ASP A 205 ALA A 210 1 6 HELIX 10 10 SER A 231 GLY A 243 1 13 HELIX 11 11 ASN A 255 ARG A 270 1 16 HELIX 12 12 GLU A 271 LEU A 273 5 3 HELIX 13 13 ASP A 286 GLY A 294 1 9 SHEET 1 AA 2 LYS A 72 ASN A 74 0 SHEET 2 AA 2 THR A 138 GLU A 140 -1 O GLY A 139 N VAL A 73 SHEET 1 AB 5 ASN A 84 ALA A 85 0 SHEET 2 AB 5 ALA A 303 LYS A 307 1 O ALA A 305 N ALA A 85 SHEET 3 AB 5 ILE A 277 VAL A 284 -1 O ILE A 280 N TYR A 306 SHEET 4 AB 5 TYR A 107 ILE A 113 -1 O MET A 108 N LYS A 283 SHEET 5 AB 5 ALA A 251 VAL A 253 -1 O ALA A 251 N CYS A 109 SHEET 1 AC 4 TYR A 126 THR A 132 0 SHEET 2 AC 4 LEU A 116 VAL A 123 -1 O SER A 119 N LEU A 131 SHEET 3 AC 4 VAL A 162 TYR A 169 -1 O VAL A 162 N TYR A 122 SHEET 4 AC 4 SER A 215 VAL A 221 -1 O SER A 215 N TYR A 169 SITE 1 AC1 8 LEU A 82 GLU A 110 GLU A 167 TYR A 219 SITE 2 AC1 8 LYS A 283 HOH A2126 HOH A2131 HOH A2168 SITE 1 AC2 8 ASN A 16 SER A 19 TYR A 20 ARG A 61 SITE 2 AC2 8 HIS A 150 ALA A 151 PRO A 153 GLY A 243 SITE 1 AC3 6 ARG A 172 PHE A 175 ASN A 192 PRO A 193 SITE 2 AC3 6 GLN A 269 ASP A 276 CRYST1 171.886 39.660 48.780 90.00 90.11 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005818 0.000000 0.000011 0.00000 SCALE2 0.000000 0.025214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020500 0.00000