HEADER HYDROLASE 08-DEC-15 5FQ9 TITLE CRYSTAL STRUCTURE OF THE OXA10 WITH 1C COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE OXA-10; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: 1C BOUND TO THE ACTIVE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR J.BREM,M.A.MCDONOUGH,R.CAIN,I.CLIFTON,C.W.G.FISHWICK,C.J.SCHOFIELD REVDAT 3 10-JAN-24 5FQ9 1 REMARK LINK REVDAT 2 21-FEB-18 5FQ9 1 JRNL REVDAT 1 17-AUG-16 5FQ9 0 JRNL AUTH J.BREM,R.CAIN,S.CAHILL,M.A.MCDONOUGH,I.J.CLIFTON, JRNL AUTH 2 J.C.JIMENEZ-CASTELLANOS,M.B.AVISON,J.SPENCER,C.W.FISHWICK, JRNL AUTH 3 C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE, JRNL TITL 2 SERINE-BETA-LACTAMASE AND PENICILLIN-BINDING PROTEIN JRNL TITL 3 INHIBITION BY CYCLIC BORONATES. JRNL REF NAT COMMUN V. 7 12406 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27499424 JRNL DOI 10.1038/NCOMMS12406 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 102233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.4243 - 4.6201 1.00 3466 201 0.1470 0.1667 REMARK 3 2 4.6201 - 3.6835 1.00 3340 164 0.1239 0.1318 REMARK 3 3 3.6835 - 3.2227 1.00 3335 154 0.1441 0.1675 REMARK 3 4 3.2227 - 2.9303 1.00 3303 150 0.1505 0.2002 REMARK 3 5 2.9303 - 2.7215 1.00 3265 172 0.1444 0.1768 REMARK 3 6 2.7215 - 2.5618 1.00 3263 182 0.1400 0.1723 REMARK 3 7 2.5618 - 2.4340 1.00 3252 159 0.1375 0.1674 REMARK 3 8 2.4340 - 2.3284 1.00 3232 161 0.1364 0.1806 REMARK 3 9 2.3284 - 2.2391 1.00 3289 155 0.1373 0.1686 REMARK 3 10 2.2391 - 2.1620 1.00 3232 186 0.1331 0.1537 REMARK 3 11 2.1620 - 2.0946 1.00 3235 175 0.1363 0.1473 REMARK 3 12 2.0946 - 2.0349 1.00 3200 161 0.1431 0.1774 REMARK 3 13 2.0349 - 1.9814 1.00 3228 183 0.1453 0.1884 REMARK 3 14 1.9814 - 1.9331 1.00 3229 162 0.1455 0.1701 REMARK 3 15 1.9331 - 1.8893 1.00 3237 152 0.1614 0.1949 REMARK 3 16 1.8893 - 1.8491 1.00 3210 178 0.1597 0.1797 REMARK 3 17 1.8491 - 1.8122 1.00 3200 165 0.1671 0.2039 REMARK 3 18 1.8122 - 1.7781 1.00 3254 162 0.1767 0.1912 REMARK 3 19 1.7781 - 1.7463 1.00 3159 174 0.1844 0.2071 REMARK 3 20 1.7463 - 1.7168 1.00 3258 174 0.1913 0.2193 REMARK 3 21 1.7168 - 1.6891 1.00 3179 163 0.1952 0.2277 REMARK 3 22 1.6891 - 1.6632 1.00 3201 174 0.2083 0.2049 REMARK 3 23 1.6632 - 1.6387 1.00 3197 172 0.2183 0.2435 REMARK 3 24 1.6387 - 1.6157 1.00 3203 189 0.2348 0.2410 REMARK 3 25 1.6157 - 1.5939 1.00 3236 145 0.2503 0.2483 REMARK 3 26 1.5939 - 1.5732 1.00 3185 158 0.2533 0.2631 REMARK 3 27 1.5732 - 1.5535 1.00 3224 162 0.2753 0.2567 REMARK 3 28 1.5535 - 1.5348 1.00 3177 169 0.2827 0.2981 REMARK 3 29 1.5348 - 1.5170 1.00 3197 161 0.3034 0.2992 REMARK 3 30 1.5170 - 1.5000 1.00 3226 158 0.3106 0.3480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4102 REMARK 3 ANGLE : 1.344 5579 REMARK 3 CHIRALITY : 0.094 611 REMARK 3 PLANARITY : 0.010 715 REMARK 3 DIHEDRAL : 21.375 1527 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 253261 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1K6R REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M NA ACETATE PH 5.0, 20% REMARK 280 PEG 6000, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.44900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.76450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.55450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.76450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.44900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.55450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 265 REMARK 465 GLY A 266 REMARK 465 GLY B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 LYS A 91 CD CE NZ REMARK 470 ARG A 104 NH1 NH2 REMARK 470 LYS A 177 CE NZ REMARK 470 LYS A 182 CE NZ REMARK 470 GLU A 214 OE1 OE2 REMARK 470 GLU A 229 OE1 OE2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 31 OE1 OE2 REMARK 470 LYS B 49 CD CE NZ REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLN B 101 CD OE1 NE2 REMARK 470 ARG B 104 CZ NH1 NH2 REMARK 470 LYS B 152 CD CE NZ REMARK 470 LYS B 177 CE NZ REMARK 470 LYS B 182 CD CE NZ REMARK 470 GLU B 214 CB CG CD OE1 OE2 REMARK 470 GLU B 244 OE1 OE2 REMARK 470 GLY B 265 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2003 O HOH A 2043 1.60 REMARK 500 O HOH A 2233 O HOH A 2234 1.68 REMARK 500 O SER A 147 O HOH A 2219 1.71 REMARK 500 OE1 GLU A 195 O HOH A 2269 1.76 REMARK 500 O HOH A 2288 O HOH A 2291 1.76 REMARK 500 O HOH A 2147 O HOH A 2148 1.81 REMARK 500 OE2 GLU A 156 O HOH A 2234 1.88 REMARK 500 O HOH A 2050 O HOH A 2129 1.89 REMARK 500 O HOH A 2268 O HOH A 2269 1.90 REMARK 500 O HOH B 2147 O HOH B 2149 1.96 REMARK 500 O SER B 147 O HOH B 2098 1.96 REMARK 500 O HOH B 2112 O HOH B 2113 1.97 REMARK 500 O HOH A 2154 O HOH A 2312 1.97 REMARK 500 O HOH B 2091 O HOH B 2106 1.99 REMARK 500 NE2 GLN A 133 O HOH A 2198 2.00 REMARK 500 O HOH A 2250 O HOH B 2052 2.01 REMARK 500 O HOH B 2014 O HOH B 2039 2.02 REMARK 500 O HOH A 2259 O HOH A 2260 2.06 REMARK 500 OE1 GLU B 183 O HOH B 2123 2.07 REMARK 500 NZ LYS A 137 O HOH A 2206 2.08 REMARK 500 O HOH A 2027 O HOH A 2053 2.10 REMARK 500 OE1 GLU B 79 O HOH B 2048 2.13 REMARK 500 OE2 GLU B 86 O HOH B 2055 2.14 REMARK 500 O HOH A 2106 O HOH A 2108 2.15 REMARK 500 NH1 ARG B 109 O HOH A 2274 2.16 REMARK 500 OE1 GLU A 156 O HOH A 2232 2.17 REMARK 500 O HOH A 2041 O HOH A 2091 2.17 REMARK 500 OH TYR B 200 O ILE B 264 2.18 REMARK 500 O HOH A 2137 O HOH A 2143 2.18 REMARK 500 O HOH A 2286 O HOH A 2310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2183 O HOH A 2319 4555 2.04 REMARK 500 O HOH A 2077 O HOH A 2155 4555 2.04 REMARK 500 NZ LYS A 137 O HOH A 2141 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 66 -142.00 50.34 REMARK 500 GLU A 229 -126.64 52.90 REMARK 500 ALA B 66 -140.52 49.60 REMARK 500 LYS B 152 -2.49 -142.40 REMARK 500 SER B 215 -5.93 80.24 REMARK 500 GLU B 229 -126.59 53.40 REMARK 500 ILE B 264 70.20 91.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Ligand C6S A 300 bound to SER A REMARK 800 67 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Ligand C6S B 300 bound to SER B REMARK 800 67 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FQC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH 2C DBREF 5FQ9 A 20 266 UNP P14489 BLO10_PSEAI 20 266 DBREF 5FQ9 B 20 266 UNP P14489 BLO10_PSEAI 20 266 SEQADV 5FQ9 MET A 19 UNP P14489 EXPRESSION TAG SEQADV 5FQ9 MET B 19 UNP P14489 EXPRESSION TAG SEQRES 1 A 248 MET GLY SER ILE THR GLU ASN THR SER TRP ASN LYS GLU SEQRES 2 A 248 PHE SER ALA GLU ALA VAL ASN GLY VAL PHE VAL LEU CYS SEQRES 3 A 248 LYS SER SER SER LYS SER CYS ALA THR ASN ASP LEU ALA SEQRES 4 A 248 ARG ALA SER LYS GLU TYR LEU PRO ALA SER THR PHE KCX SEQRES 5 A 248 ILE PRO ASN ALA ILE ILE GLY LEU GLU THR GLY VAL ILE SEQRES 6 A 248 LYS ASN GLU HIS GLN VAL PHE LYS TRP ASP GLY LYS PRO SEQRES 7 A 248 ARG ALA MET LYS GLN TRP GLU ARG ASP LEU THR LEU ARG SEQRES 8 A 248 GLY ALA ILE GLN VAL SER ALA VAL PRO VAL PHE GLN GLN SEQRES 9 A 248 ILE ALA ARG GLU VAL GLY GLU VAL ARG MET GLN LYS TYR SEQRES 10 A 248 LEU LYS LYS PHE SER TYR GLY ASN GLN ASN ILE SER GLY SEQRES 11 A 248 GLY ILE ASP LYS PHE TRP LEU GLU GLY GLN LEU ARG ILE SEQRES 12 A 248 SER ALA VAL ASN GLN VAL GLU PHE LEU GLU SER LEU TYR SEQRES 13 A 248 LEU ASN LYS LEU SER ALA SER LYS GLU ASN GLN LEU ILE SEQRES 14 A 248 VAL LYS GLU ALA LEU VAL THR GLU ALA ALA PRO GLU TYR SEQRES 15 A 248 LEU VAL HIS SER LYS THR GLY PHE SER GLY VAL GLY THR SEQRES 16 A 248 GLU SER ASN PRO GLY VAL ALA TRP TRP VAL GLY TRP VAL SEQRES 17 A 248 GLU LYS GLU THR GLU VAL TYR PHE PHE ALA PHE ASN MET SEQRES 18 A 248 ASP ILE ASP ASN GLU SER LYS LEU PRO LEU ARG LYS SER SEQRES 19 A 248 ILE PRO THR LYS ILE MET GLU SER GLU GLY ILE ILE GLY SEQRES 20 A 248 GLY SEQRES 1 B 248 MET GLY SER ILE THR GLU ASN THR SER TRP ASN LYS GLU SEQRES 2 B 248 PHE SER ALA GLU ALA VAL ASN GLY VAL PHE VAL LEU CYS SEQRES 3 B 248 LYS SER SER SER LYS SER CYS ALA THR ASN ASP LEU ALA SEQRES 4 B 248 ARG ALA SER LYS GLU TYR LEU PRO ALA SER THR PHE KCX SEQRES 5 B 248 ILE PRO ASN ALA ILE ILE GLY LEU GLU THR GLY VAL ILE SEQRES 6 B 248 LYS ASN GLU HIS GLN VAL PHE LYS TRP ASP GLY LYS PRO SEQRES 7 B 248 ARG ALA MET LYS GLN TRP GLU ARG ASP LEU THR LEU ARG SEQRES 8 B 248 GLY ALA ILE GLN VAL SER ALA VAL PRO VAL PHE GLN GLN SEQRES 9 B 248 ILE ALA ARG GLU VAL GLY GLU VAL ARG MET GLN LYS TYR SEQRES 10 B 248 LEU LYS LYS PHE SER TYR GLY ASN GLN ASN ILE SER GLY SEQRES 11 B 248 GLY ILE ASP LYS PHE TRP LEU GLU GLY GLN LEU ARG ILE SEQRES 12 B 248 SER ALA VAL ASN GLN VAL GLU PHE LEU GLU SER LEU TYR SEQRES 13 B 248 LEU ASN LYS LEU SER ALA SER LYS GLU ASN GLN LEU ILE SEQRES 14 B 248 VAL LYS GLU ALA LEU VAL THR GLU ALA ALA PRO GLU TYR SEQRES 15 B 248 LEU VAL HIS SER LYS THR GLY PHE SER GLY VAL GLY THR SEQRES 16 B 248 GLU SER ASN PRO GLY VAL ALA TRP TRP VAL GLY TRP VAL SEQRES 17 B 248 GLU LYS GLU THR GLU VAL TYR PHE PHE ALA PHE ASN MET SEQRES 18 B 248 ASP ILE ASP ASN GLU SER LYS LEU PRO LEU ARG LYS SER SEQRES 19 B 248 ILE PRO THR LYS ILE MET GLU SER GLU GLY ILE ILE GLY SEQRES 20 B 248 GLY MODRES 5FQ9 KCX A 70 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 5FQ9 KCX B 70 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 70 12 HET KCX B 70 12 HET C6S A 300 23 HET GOL A 400 6 HET GOL A 401 6 HET GOL A 402 6 HET ACT A 500 4 HET CL A 600 1 HET C6S B 300 23 HET GOL B 400 6 HET NA B 500 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM C6S (3R)-3-(CYCLOHEXYLCARBONYLAMINO)-2-OXIDANYL-3,4- HETNAM 2 C6S DIHYDRO-1,2-BENZOXABORININE-8-CARBOXYLIC ACID HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 C6S 2(C16 H20 B N O5) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 CL CL 1- FORMUL 11 NA NA 1+ FORMUL 12 HOH *491(H2 O) HELIX 1 1 TRP A 28 ALA A 34 1 7 HELIX 2 2 ASP A 55 SER A 60 1 6 HELIX 3 3 PRO A 65 THR A 68 5 4 HELIX 4 4 PHE A 69 THR A 80 1 12 HELIX 5 5 MET A 99 GLU A 103 5 5 HELIX 6 6 LEU A 108 VAL A 114 1 7 HELIX 7 7 ALA A 116 PHE A 139 1 24 HELIX 8 8 ALA A 163 LEU A 175 1 13 HELIX 9 9 SER A 181 LEU A 192 1 12 HELIX 10 10 ASN A 243 LEU A 247 5 5 HELIX 11 11 PRO A 248 GLU A 261 1 14 HELIX 12 12 TRP B 28 ALA B 34 1 7 HELIX 13 13 ASP B 55 SER B 60 1 6 HELIX 14 14 PRO B 65 THR B 68 5 4 HELIX 15 15 PHE B 69 THR B 80 1 12 HELIX 16 16 MET B 99 GLU B 103 5 5 HELIX 17 17 LEU B 108 VAL B 114 1 7 HELIX 18 18 ALA B 116 PHE B 139 1 24 HELIX 19 19 ALA B 163 LEU B 175 1 13 HELIX 20 20 SER B 181 LEU B 192 1 12 HELIX 21 21 ASN B 243 LEU B 247 5 5 HELIX 22 22 PRO B 248 GLU B 261 1 14 SHEET 1 AA 7 SER A 21 GLU A 24 0 SHEET 2 AA 7 SER A 50 THR A 53 1 O CYS A 51 N THR A 23 SHEET 3 AA 7 GLY A 39 LYS A 45 -1 O LEU A 43 N ALA A 52 SHEET 4 AA 7 GLU A 231 ILE A 241 -1 O PHE A 234 N CYS A 44 SHEET 5 AA 7 GLY A 218 LYS A 228 -1 O GLY A 218 N ILE A 241 SHEET 6 AA 7 TYR A 200 PHE A 208 -1 O LEU A 201 N GLU A 227 SHEET 7 AA 7 VAL A 193 ALA A 197 -1 N THR A 194 O VAL A 202 SHEET 1 AB 2 GLU A 62 TYR A 63 0 SHEET 2 AB 2 ILE A 161 SER A 162 -1 O ILE A 161 N TYR A 63 SHEET 1 AC 2 VAL A 89 PHE A 90 0 SHEET 2 AC 2 LEU A 106 THR A 107 -1 O LEU A 106 N PHE A 90 SHEET 1 BA 7 SER B 21 GLU B 24 0 SHEET 2 BA 7 SER B 50 THR B 53 1 O CYS B 51 N THR B 23 SHEET 3 BA 7 GLY B 39 LYS B 45 -1 O LEU B 43 N ALA B 52 SHEET 4 BA 7 GLU B 231 ILE B 241 -1 O PHE B 234 N CYS B 44 SHEET 5 BA 7 GLY B 218 LYS B 228 -1 O GLY B 218 N ILE B 241 SHEET 6 BA 7 TYR B 200 PHE B 208 -1 O LEU B 201 N GLU B 227 SHEET 7 BA 7 VAL B 193 ALA B 197 -1 N THR B 194 O VAL B 202 SHEET 1 BB 2 GLU B 62 TYR B 63 0 SHEET 2 BB 2 ILE B 161 SER B 162 -1 O ILE B 161 N TYR B 63 SHEET 1 BC 2 VAL B 89 PHE B 90 0 SHEET 2 BC 2 LEU B 106 THR B 107 -1 O LEU B 106 N PHE B 90 SSBOND 1 CYS A 44 CYS A 51 1555 1555 2.05 SSBOND 2 CYS B 44 CYS B 51 1555 1555 2.08 LINK OG SER A 67 B02 C6S A 300 1555 1555 1.56 LINK C PHE A 69 N KCX A 70 1555 1555 1.33 LINK C KCX A 70 N ILE A 71 1555 1555 1.35 LINK OG SER B 67 B02 C6S B 300 1555 1555 1.76 LINK C PHE B 69 N KCX B 70 1555 1555 1.33 LINK C KCX B 70 N ILE B 71 1555 1555 1.33 LINK OE2 GLU B 171 NA NA B 500 1555 1555 3.00 SITE 1 AC1 9 THR A 107 ARG A 109 HOH A2170 HOH A2332 SITE 2 AC1 9 ALA B 197 PRO B 198 GLU B 199 TYR B 200 SITE 3 AC1 9 GLU B 229 SITE 1 AC2 10 ALA A 98 MET A 99 GLU A 129 ILE A 146 SITE 2 AC2 10 GLY A 148 GLY A 149 ILE A 150 HOH A2147 SITE 3 AC2 10 HOH A2148 HOH A2333 SITE 1 AC3 8 LYS A 138 PHE A 139 SER A 140 GLU A 168 SITE 2 AC3 8 SER A 172 LEU A 178 HOH A2210 HOH A2334 SITE 1 AC4 7 GLU A 199 GLU A 227 GLU A 229 HOH A2274 SITE 2 AC4 7 HOH A2292 HOH A2335 THR B 107 SITE 1 AC5 2 ALA A 98 HOH A2056 SITE 1 AC6 5 LEU B 43 LYS B 45 SER B 50 HOH B2154 SITE 2 AC6 5 HOH B2156 SITE 1 AC7 2 GLY B 20 GLU B 171 SITE 1 AC8 12 ALA A 66 SER A 67 SER A 115 VAL A 117 SITE 2 AC8 12 GLU A 129 VAL A 130 THR A 206 GLY A 207 SITE 3 AC8 12 PHE A 208 SER A 209 ARG A 250 HOH A2331 SITE 1 AC9 10 ALA B 66 SER B 67 KCX B 70 SER B 115 SITE 2 AC9 10 VAL B 117 THR B 206 GLY B 207 PHE B 208 SITE 3 AC9 10 SER B 209 ARG B 250 CRYST1 48.898 103.109 125.529 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007966 0.00000 MTRIX1 1 0.805400 0.591000 0.045200 -2.54500 1 MTRIX2 1 0.590700 -0.806600 0.021600 6.55990 1 MTRIX3 1 0.049200 0.009300 -0.998700 15.93640 1