HEADER HYDROLASE 08-DEC-15 5FQA TITLE CRYSTAL STRUCTURE OF BACILLUS CEREUS METALLO-BETA-LACTAMASE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-257; COMPND 5 SYNONYM: BETA-LACTAMASE II, CEPHALOSPORINASE, PENICILLINASE, METALLO- COMPND 6 BETA-LACTAMASE II; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET9A KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE, LACTAMASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.CAHILL,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 7 06-NOV-24 5FQA 1 REMARK REVDAT 6 10-JAN-24 5FQA 1 REMARK LINK REVDAT 5 28-MAR-18 5FQA 1 JRNL REVDAT 4 16-NOV-16 5FQA 1 JRNL REVDAT 3 21-SEP-16 5FQA 1 JRNL REMARK REVDAT 2 24-AUG-16 5FQA 1 JRNL REVDAT 1 10-AUG-16 5FQA 0 JRNL AUTH S.T.CAHILL,H.TARHONSKAYA,A.M.RYDZIK,E.FLASHMAN, JRNL AUTH 2 M.A.MCDONOUGH,C.J.SCHOFIELD,J.BREM JRNL TITL USE OF FERROUS IRON BY METALLO-BETA-LACTAMASES. JRNL REF J. INORG. BIOCHEM. V. 163 185 2016 JRNL REFN ISSN 1873-3344 JRNL PMID 27498591 JRNL DOI 10.1016/J.JINORGBIO.2016.07.013 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 87857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.1774 - 3.4027 1.00 2872 184 0.1539 0.1667 REMARK 3 2 3.4027 - 2.7070 0.99 2867 159 0.1380 0.1668 REMARK 3 3 2.7070 - 2.3666 1.00 2887 155 0.1311 0.1456 REMARK 3 4 2.3666 - 2.1510 1.00 2836 156 0.1183 0.1276 REMARK 3 5 2.1510 - 1.9973 1.00 2863 151 0.1048 0.1294 REMARK 3 6 1.9973 - 1.8798 0.99 2884 119 0.1070 0.1050 REMARK 3 7 1.8798 - 1.7859 0.99 2851 129 0.1023 0.1325 REMARK 3 8 1.7859 - 1.7083 0.99 2790 184 0.0997 0.1158 REMARK 3 9 1.7083 - 1.6426 0.99 2848 142 0.0979 0.1204 REMARK 3 10 1.6426 - 1.5860 0.99 2813 161 0.0898 0.1214 REMARK 3 11 1.5860 - 1.5365 0.98 2821 144 0.0884 0.1182 REMARK 3 12 1.5365 - 1.4926 0.98 2776 134 0.0896 0.1127 REMARK 3 13 1.4926 - 1.4533 0.98 2803 131 0.0885 0.1162 REMARK 3 14 1.4533 - 1.4179 0.97 2800 135 0.0899 0.1144 REMARK 3 15 1.4179 - 1.3857 0.97 2769 153 0.0900 0.1135 REMARK 3 16 1.3857 - 1.3562 0.97 2739 151 0.0946 0.1281 REMARK 3 17 1.3562 - 1.3291 0.97 2812 123 0.1002 0.1307 REMARK 3 18 1.3291 - 1.3041 0.97 2746 135 0.1011 0.1286 REMARK 3 19 1.3041 - 1.2808 0.97 2762 125 0.1021 0.1249 REMARK 3 20 1.2808 - 1.2591 0.97 2754 149 0.1027 0.1322 REMARK 3 21 1.2591 - 1.2388 0.97 2740 149 0.1062 0.1259 REMARK 3 22 1.2388 - 1.2198 0.96 2749 138 0.1105 0.1447 REMARK 3 23 1.2198 - 1.2018 0.96 2725 138 0.1102 0.1355 REMARK 3 24 1.2018 - 1.1849 0.96 2731 156 0.1079 0.1446 REMARK 3 25 1.1849 - 1.1689 0.96 2729 125 0.1142 0.1304 REMARK 3 26 1.1689 - 1.1537 0.96 2716 142 0.1178 0.1306 REMARK 3 27 1.1537 - 1.1393 0.96 2735 169 0.1173 0.1437 REMARK 3 28 1.1393 - 1.1256 0.95 2687 118 0.1254 0.1383 REMARK 3 29 1.1256 - 1.1125 0.95 2767 146 0.1383 0.1546 REMARK 3 30 1.1125 - 1.1000 0.95 2656 128 0.1467 0.1646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1899 REMARK 3 ANGLE : 1.568 2607 REMARK 3 CHIRALITY : 0.088 309 REMARK 3 PLANARITY : 0.008 334 REMARK 3 DIHEDRAL : 13.128 706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 14.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4C09 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 TRIS, 25 % W/V PEG 3350 PH 5.5, 1 MM TCEP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.52400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.52400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2153 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2272 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2356 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 GLN A 32 REMARK 465 LYS A 33 REMARK 465 VAL A 34 REMARK 465 THR A 43 REMARK 465 PHE A 64 REMARK 465 ASN A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 465 ALA A 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LEU A 61 CD1 REMARK 470 SER A 63 OG REMARK 470 VAL A 69 CG1 REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 92 CD CE NZ REMARK 470 LYS A 103 NZ REMARK 470 LYS A 126 NZ REMARK 470 LYS A 164 NZ REMARK 470 ASN A 167 CG OD1 ND2 REMARK 470 ASN A 210 OD1 ND2 REMARK 470 ARG A 231 NE CZ NH1 NH2 REMARK 470 GLU A 242 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2244 O HOH A 2328 1.69 REMARK 500 O HOH A 2277 O HOH A 2328 1.77 REMARK 500 OD1 CSD A 198 O OH A 263 1.83 REMARK 500 O HOH A 2342 O HOH A 2343 1.84 REMARK 500 O HOH A 2342 O HOH A 2348 2.06 REMARK 500 O HOH A 2119 O HOH A 2121 2.15 REMARK 500 OE1 GLU A 96 O HOH A 2077 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 217 O HOH A 2078 2556 1.95 REMARK 500 OE2 GLU A 143 O HOH A 2292 2556 2.00 REMARK 500 O HOH A 2134 O HOH A 2344 2656 2.09 REMARK 500 O HOH A 2273 O HOH A 2344 2656 2.11 REMARK 500 O HOH A 2024 O HOH A 2088 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 148.87 75.98 REMARK 500 ASP A 86 151.42 75.98 REMARK 500 SER A 87 -139.00 -91.31 REMARK 500 SER A 87 -114.46 -103.29 REMARK 500 ALA A 117 44.20 -96.58 REMARK 500 ASP A 245 -158.15 -137.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2056 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2057 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2087 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2092 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A2111 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2138 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2153 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2355 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2356 DISTANCE = 7.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 258 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 94.0 REMARK 620 3 HIS A 118 ND1 98.1 7.4 REMARK 620 4 HIS A 179 NE2 97.6 104.4 97.6 REMARK 620 5 CSD A 198 OD1 88.5 168.0 171.5 86.8 REMARK 620 6 OH A 263 O 112.9 118.3 121.6 123.9 50.4 REMARK 620 7 HOH A2144 O 173.2 79.9 76.3 87.0 96.9 68.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 259 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CSD A 198 SG 97.6 REMARK 620 3 HIS A 240 NE2 83.3 98.1 REMARK 620 4 OH A 263 O 86.5 104.6 156.2 REMARK 620 5 HOH A2244 O 170.0 91.1 90.9 95.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C09 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BCII WITH L- REMARK 900 CAPTOPRIL DBREF 5FQA A 31 257 UNP P04190 BLA2_BACCE 31 257 SEQRES 1 A 227 SER GLN LYS VAL GLU LYS THR VAL ILE LYS ASN GLU THR SEQRES 2 A 227 GLY THR ILE SER ILE SER GLN LEU ASN LYS ASN VAL TRP SEQRES 3 A 227 VAL HIS THR GLU LEU GLY SER PHE ASN GLY GLU ALA VAL SEQRES 4 A 227 PRO SER ASN GLY LEU VAL LEU ASN THR SER LYS GLY LEU SEQRES 5 A 227 VAL LEU VAL ASP SER SER TRP ASP ASP LYS LEU THR LYS SEQRES 6 A 227 GLU LEU ILE GLU MET VAL GLU LYS LYS PHE GLN LYS ARG SEQRES 7 A 227 VAL THR ASP VAL ILE ILE THR HIS ALA HIS ALA ASP ARG SEQRES 8 A 227 ILE GLY GLY ILE LYS THR LEU LYS GLU ARG GLY ILE LYS SEQRES 9 A 227 ALA HIS SER THR ALA LEU THR ALA GLU LEU ALA LYS LYS SEQRES 10 A 227 ASN GLY TYR GLU GLU PRO LEU GLY ASP LEU GLN THR VAL SEQRES 11 A 227 THR ASN LEU LYS PHE GLY ASN MET LYS VAL GLU THR PHE SEQRES 12 A 227 TYR PRO GLY LYS GLY HIS THR GLU ASP ASN ILE VAL VAL SEQRES 13 A 227 TRP LEU PRO GLN TYR ASN ILE LEU VAL GLY GLY CSD LEU SEQRES 14 A 227 VAL LYS SER THR SER ALA LYS ASP LEU GLY ASN VAL ALA SEQRES 15 A 227 ASP ALA TYR VAL ASN GLU TRP SER THR SER ILE GLU ASN SEQRES 16 A 227 VAL LEU LYS ARG TYR ARG ASN ILE ASN ALA VAL VAL PRO SEQRES 17 A 227 GLY HIS GLY GLU VAL GLY ASP LYS GLY LEU LEU LEU HIS SEQRES 18 A 227 THR LEU ASP LEU LEU LYS MODRES 5FQA CSD A 198 CYS 3-SULFINOALANINE HET CSD A 198 8 HET FE A 258 1 HET FE A 259 1 HET GOL A 260 6 HET SO4 A 262 5 HET OH A 263 1 HET EDO A 264 4 HETNAM CSD 3-SULFINOALANINE HETNAM FE FE (III) ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM OH HYDROXIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 FE 2(FE 3+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 SO4 O4 S 2- FORMUL 6 OH H O 1- FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *356(H2 O) HELIX 1 1 ASP A 90 GLN A 106 1 17 HELIX 2 2 HIS A 118 GLY A 123 1 6 HELIX 3 3 GLY A 124 GLY A 132 1 9 HELIX 4 4 THR A 138 ASN A 148 1 11 HELIX 5 5 CSD A 198 VAL A 200 5 3 HELIX 6 6 GLU A 218 TYR A 230 1 13 HELIX 7 7 LYS A 246 LEU A 256 1 11 SHEET 1 AA 7 VAL A 38 LYS A 40 0 SHEET 2 AA 7 ILE A 46 ASN A 52 -1 O ILE A 48 N ILE A 39 SHEET 3 AA 7 VAL A 55 LEU A 61 -1 O VAL A 55 N LEU A 51 SHEET 4 AA 7 PRO A 70 THR A 78 -1 O SER A 71 N GLU A 60 SHEET 5 AA 7 GLY A 81 VAL A 85 -1 O GLY A 81 N THR A 78 SHEET 6 AA 7 VAL A 109 ILE A 113 1 N THR A 110 O LEU A 82 SHEET 7 AA 7 LYS A 134 HIS A 136 1 O LYS A 134 N VAL A 112 SHEET 1 AB 5 VAL A 160 PHE A 165 0 SHEET 2 AB 5 MET A 168 PHE A 173 -1 O MET A 168 N PHE A 165 SHEET 3 AB 5 VAL A 185 TRP A 187 -1 O VAL A 185 N PHE A 173 SHEET 4 AB 5 ILE A 193 GLY A 197 -1 O VAL A 195 N VAL A 186 SHEET 5 AB 5 ALA A 235 PRO A 238 1 O ALA A 235 N LEU A 194 LINK C GLY A 197 N CSD A 198 1555 1555 1.31 LINK C CSD A 198 N LEU A 199 1555 1555 1.33 LINK NE2 HIS A 116 FE FE A 258 1555 1555 2.16 LINK ND1AHIS A 118 FE FE A 258 1555 1555 2.08 LINK ND1BHIS A 118 FE FE A 258 1555 1555 2.02 LINK OD2AASP A 120 FE A FE A 259 1555 1555 2.17 LINK NE2 HIS A 179 FE FE A 258 1555 1555 2.10 LINK OD1 CSD A 198 FE FE A 258 1555 1555 2.37 LINK SG CSD A 198 FE A FE A 259 1555 1555 2.34 LINK NE2 HIS A 240 FE A FE A 259 1555 1555 2.14 LINK FE FE A 258 O A OH A 263 1555 1555 1.69 LINK FE FE A 258 O HOH A2144 1555 1555 2.36 LINK FE A FE A 259 O A OH A 263 1555 1555 1.97 LINK FE A FE A 259 O HOH A2244 1555 1555 2.11 SITE 1 AC1 7 HIS A 116 HIS A 118 HIS A 179 CSD A 198 SITE 2 AC1 7 FE A 259 OH A 263 HOH A2144 SITE 1 AC2 6 ASP A 120 CSD A 198 HIS A 240 FE A 258 SITE 2 AC2 6 OH A 263 HOH A2244 SITE 1 AC3 6 LYS A 95 GLU A 130 ARG A 131 HOH A2081 SITE 2 AC3 6 HOH A2099 HOH A2350 SITE 1 AC4 5 LYS A 103 LYS A 169 GLN A 190 HOH A2352 SITE 2 AC4 5 HOH A2353 SITE 1 AC5 9 HIS A 116 HIS A 118 ASP A 120 HIS A 179 SITE 2 AC5 9 CSD A 198 FE A 258 FE A 259 HOH A2144 SITE 3 AC5 9 HOH A2244 SITE 1 AC6 5 HIS A 118 ASN A 148 HOH A2140 HOH A2192 SITE 2 AC6 5 HOH A2285 CRYST1 53.048 61.500 69.469 90.00 92.98 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018851 0.000000 0.000981 0.00000 SCALE2 0.000000 0.016260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014414 0.00000