HEADER HYDROLASE 08-DEC-15 5FQB TITLE CRYSTAL STRUCTURE OF BACILLUS CEREUS METALLO-BETA-LACTAMASE WITH 2C COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-257; COMPND 5 SYNONYM: BETA-LACTAMASE II, CEPHALOSPORINASE, PENICILLINASE, METALLO- COMPND 6 BETA-LACTAMASE II; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: (R)-3-(4-(AMINOMETHYL)BENZAMIDO)-8-CARBOXY-2,2- COMPND 10 DIHYDROXY-3,4-DIHYDRO-2H-BENZO(E)(1,2)OXABORININ-2-UIDE BOUND AT COMPND 11 ACTIVE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET9A KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE, LACTAMASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.CAHILL,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 6 10-JAN-24 5FQB 1 REMARK LINK REVDAT 5 30-OCT-19 5FQB 1 COMPND REMARK HETNAM FORMUL REVDAT 4 21-FEB-18 5FQB 1 JRNL REVDAT 3 28-JUN-17 5FQB 1 REMARK REVDAT 2 17-AUG-16 5FQB 1 JRNL REVDAT 1 10-AUG-16 5FQB 0 JRNL AUTH J.BREM,R.CAIN,S.CAHILL,M.A.MCDONOUGH,I.J.CLIFTON, JRNL AUTH 2 J.C.JIMENEZ-CASTELLANOS,M.B.AVISON,J.SPENCER,C.W.FISHWICK, JRNL AUTH 3 C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE, JRNL TITL 2 SERINE-BETA-LACTAMASE AND PENICILLIN-BINDING PROTEIN JRNL TITL 3 INHIBITION BY CYCLIC BORONATES. JRNL REF NAT COMMUN V. 7 12406 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27499424 JRNL DOI 10.1038/NCOMMS12406 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 17332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.6438 - 4.3359 1.00 1356 149 0.1433 0.1489 REMARK 3 2 4.3359 - 3.4461 1.00 1338 145 0.1211 0.1540 REMARK 3 3 3.4461 - 3.0118 1.00 1333 145 0.1410 0.2032 REMARK 3 4 3.0118 - 2.7370 0.99 1293 153 0.1630 0.1918 REMARK 3 5 2.7370 - 2.5411 0.99 1296 147 0.1531 0.2123 REMARK 3 6 2.5411 - 2.3915 0.99 1292 150 0.1400 0.1907 REMARK 3 7 2.3915 - 2.2719 0.98 1312 141 0.1318 0.1756 REMARK 3 8 2.2719 - 2.1731 0.98 1291 151 0.1371 0.1864 REMARK 3 9 2.1731 - 2.0895 0.98 1287 133 0.1319 0.2088 REMARK 3 10 2.0895 - 2.0174 0.97 1253 148 0.1408 0.1958 REMARK 3 11 2.0174 - 1.9544 0.97 1304 136 0.1503 0.2014 REMARK 3 12 1.9544 - 1.8986 0.95 1237 142 0.1578 0.2078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1754 REMARK 3 ANGLE : 1.245 2393 REMARK 3 CHIRALITY : 0.048 283 REMARK 3 PLANARITY : 0.006 301 REMARK 3 DIHEDRAL : 14.134 630 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6388 4.5191 10.0623 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.4195 REMARK 3 T33: 0.2208 T12: -0.0729 REMARK 3 T13: -0.0165 T23: 0.0949 REMARK 3 L TENSOR REMARK 3 L11: 6.1562 L22: 4.3810 REMARK 3 L33: 5.1739 L12: -0.1509 REMARK 3 L13: -0.9516 L23: 0.5627 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: 0.5128 S13: 0.4231 REMARK 3 S21: -0.2833 S22: -0.1264 S23: -0.6248 REMARK 3 S31: -0.6967 S32: 0.9952 S33: 0.0255 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.1505 3.5671 8.1147 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.1727 REMARK 3 T33: 0.1353 T12: -0.0114 REMARK 3 T13: -0.0363 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.4812 L22: 2.4842 REMARK 3 L33: 7.3144 L12: 0.0775 REMARK 3 L13: -0.6985 L23: -0.7925 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.1401 S13: 0.1518 REMARK 3 S21: -0.1052 S22: -0.0775 S23: -0.0087 REMARK 3 S31: -0.4487 S32: 0.4276 S33: 0.0936 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.8848 3.6469 12.9193 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1393 REMARK 3 T33: 0.1289 T12: 0.0143 REMARK 3 T13: -0.0097 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.4475 L22: 2.4082 REMARK 3 L33: 9.1112 L12: -0.5274 REMARK 3 L13: 1.7926 L23: -3.4873 REMARK 3 S TENSOR REMARK 3 S11: -0.1770 S12: 0.1679 S13: 0.2057 REMARK 3 S21: -0.0055 S22: -0.0453 S23: -0.0211 REMARK 3 S31: -0.4395 S32: -0.1751 S33: 0.1247 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8726 -4.6622 24.2413 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.0796 REMARK 3 T33: 0.1177 T12: -0.0037 REMARK 3 T13: 0.0240 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.1738 L22: 1.5900 REMARK 3 L33: 4.0554 L12: -0.3951 REMARK 3 L13: 0.7382 L23: 0.4150 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: 0.0179 S13: -0.0825 REMARK 3 S21: 0.0599 S22: -0.0085 S23: -0.0216 REMARK 3 S31: 0.1459 S32: 0.1583 S33: 0.0252 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.3367 -1.3392 28.6781 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.2564 REMARK 3 T33: 0.1605 T12: -0.0176 REMARK 3 T13: -0.0274 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.5468 L22: 3.0679 REMARK 3 L33: 5.9757 L12: -0.6633 REMARK 3 L13: -0.3987 L23: 1.0218 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: 0.1006 S13: 0.1245 REMARK 3 S21: 0.0619 S22: 0.1710 S23: -0.1723 REMARK 3 S31: 0.1260 S32: 0.8130 S33: -0.0588 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC HF MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 21.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4C09 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 TRIS, 25 % W/V PEG 3350 PH 5.5, 1 MM TCEP., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.57350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.55850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.57350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.55850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 GLN A 32 REMARK 465 LYS A 33 REMARK 465 VAL A 34 REMARK 465 GLU A 35 REMARK 465 ASN A 66 REMARK 465 GLY A 67 REMARK 465 GLU A 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 40 CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LEU A 62 CD1 CD2 REMARK 470 SER A 64 OG REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 93 CD CE NZ REMARK 470 LYS A 150 CE NZ REMARK 470 LYS A 151 CE NZ REMARK 470 LYS A 184 NZ REMARK 470 ASN A 187 CG OD1 ND2 REMARK 470 ARG A 257 CZ NH1 NH2 REMARK 470 GLU A 268 OE1 OE2 REMARK 470 LYS A 294 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 243 O HOH A 2155 2.12 REMARK 500 O HOH A 2139 O HOH A 2181 2.14 REMARK 500 O HOH A 2163 O HOH A 2164 2.15 REMARK 500 O HOH A 2185 O HOH A 2186 2.16 REMARK 500 O HOH A 2061 O HOH A 2091 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2087 O HOH A 2151 2756 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 149.23 69.55 REMARK 500 SER A 88 -131.45 -95.06 REMARK 500 ALA A 120 30.70 -91.43 REMARK 500 ASP A 282 -155.40 -131.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2063 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 296 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HIS A 121 ND1 102.1 REMARK 620 3 HIS A 199 NE2 100.8 115.8 REMARK 620 4 OK3 A 297 O18 98.7 109.1 125.2 REMARK 620 5 HOH A2059 O 106.5 121.1 107.8 17.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 295 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 123 OD2 REMARK 620 2 CYS A 224 SG 94.2 REMARK 620 3 HIS A 266 NE2 77.0 112.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OK3 A 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FQA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS CEREUS METALLO-BETA- LACTAMASE II DBREF 5FQB A 31 294 UNP P04190 BLA2_BACCE 31 257 SEQRES 1 A 227 SER GLN LYS VAL GLU LYS THR VAL ILE LYS ASN GLU THR SEQRES 2 A 227 GLY THR ILE SER ILE SER GLN LEU ASN LYS ASN VAL TRP SEQRES 3 A 227 VAL HIS THR GLU LEU GLY SER PHE ASN GLY GLU ALA VAL SEQRES 4 A 227 PRO SER ASN GLY LEU VAL LEU ASN THR SER LYS GLY LEU SEQRES 5 A 227 VAL LEU VAL ASP SER SER TRP ASP ASP LYS LEU THR LYS SEQRES 6 A 227 GLU LEU ILE GLU MET VAL GLU LYS LYS PHE GLN LYS ARG SEQRES 7 A 227 VAL THR ASP VAL ILE ILE THR HIS ALA HIS ALA ASP ARG SEQRES 8 A 227 ILE GLY GLY ILE LYS THR LEU LYS GLU ARG GLY ILE LYS SEQRES 9 A 227 ALA HIS SER THR ALA LEU THR ALA GLU LEU ALA LYS LYS SEQRES 10 A 227 ASN GLY TYR GLU GLU PRO LEU GLY ASP LEU GLN THR VAL SEQRES 11 A 227 THR ASN LEU LYS PHE GLY ASN MET LYS VAL GLU THR PHE SEQRES 12 A 227 TYR PRO GLY LYS GLY HIS THR GLU ASP ASN ILE VAL VAL SEQRES 13 A 227 TRP LEU PRO GLN TYR ASN ILE LEU VAL GLY GLY CYS LEU SEQRES 14 A 227 VAL LYS SER THR SER ALA LYS ASP LEU GLY ASN VAL ALA SEQRES 15 A 227 ASP ALA TYR VAL ASN GLU TRP SER THR SER ILE GLU ASN SEQRES 16 A 227 VAL LEU LYS ARG TYR ARG ASN ILE ASN ALA VAL VAL PRO SEQRES 17 A 227 GLY HIS GLY GLU VAL GLY ASP LYS GLY LEU LEU LEU HIS SEQRES 18 A 227 THR LEU ASP LEU LEU LYS HET ZN A 295 1 HET ZN A 296 1 HET OK3 A 297 26 HET SO4 A 298 5 HET GOL A 299 6 HETNAM ZN ZINC ION HETNAM OK3 (4~{R})-4-[[4-(AMINOMETHYL)PHENYL]CARBONYLAMINO]-3,3- HETNAM 2 OK3 BIS(OXIDANYL)-2-OXA-3-BORANUIDABICYCLO[4.4.0]DECA- HETNAM 3 OK3 1(10),6,8-TRIENE-10-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 OK3 C17 H18 B N2 O6 1- FORMUL 5 SO4 O4 S 2- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *189(H2 O) HELIX 1 1 ASP A 91 GLN A 108 1 17 HELIX 2 2 HIS A 121 GLY A 126 1 6 HELIX 3 3 GLY A 127 GLY A 136 1 9 HELIX 4 4 THR A 142 ASN A 152 1 11 HELIX 5 5 CYS A 224 VAL A 226 5 3 HELIX 6 6 TYR A 241 TYR A 256 1 16 HELIX 7 7 LYS A 283 LEU A 293 1 11 SHEET 1 AA 7 VAL A 38 LYS A 40 0 SHEET 2 AA 7 ILE A 46 ASN A 53 -1 O ILE A 48 N ILE A 39 SHEET 3 AA 7 VAL A 56 GLY A 63 -1 O VAL A 56 N LEU A 52 SHEET 4 AA 7 VAL A 70 THR A 79 -1 O VAL A 70 N GLY A 63 SHEET 5 AA 7 GLY A 82 VAL A 86 -1 O GLY A 82 N THR A 79 SHEET 6 AA 7 VAL A 112 ILE A 116 1 N THR A 113 O LEU A 83 SHEET 7 AA 7 LYS A 138 HIS A 140 1 O LYS A 138 N VAL A 115 SHEET 1 AB 5 VAL A 180 PHE A 185 0 SHEET 2 AB 5 MET A 188 PHE A 193 -1 O MET A 188 N PHE A 185 SHEET 3 AB 5 VAL A 205 TRP A 207 -1 O VAL A 205 N PHE A 193 SHEET 4 AB 5 ILE A 219 GLY A 223 -1 O VAL A 221 N VAL A 206 SHEET 5 AB 5 ALA A 261 PRO A 264 1 O ALA A 261 N LEU A 220 LINK NE2 HIS A 119 ZN ZN A 296 1555 1555 2.09 LINK ND1 HIS A 121 ZN ZN A 296 1555 1555 2.00 LINK OD2 ASP A 123 ZN ZN A 295 1555 1555 2.57 LINK NE2 HIS A 199 ZN ZN A 296 1555 1555 2.02 LINK SG CYS A 224 ZN ZN A 295 1555 1555 2.22 LINK NE2 HIS A 266 ZN ZN A 295 1555 1555 2.23 LINK ZN ZN A 296 O18AOK3 A 297 1555 1555 1.81 LINK ZN ZN A 296 O BHOH A2059 1555 1555 2.17 SITE 1 AC1 4 ASP A 123 CYS A 224 HIS A 266 OK3 A 297 SITE 1 AC2 4 HIS A 119 HIS A 121 HIS A 199 OK3 A 297 SITE 1 AC3 17 PHE A 65 TRP A 90 HIS A 119 HIS A 121 SITE 2 AC3 17 ALA A 122 ASP A 123 HIS A 199 CYS A 224 SITE 3 AC3 17 LYS A 227 ASN A 236 ASP A 239 HIS A 266 SITE 4 AC3 17 ZN A 295 ZN A 296 HOH A2120 HOH A2132 SITE 5 AC3 17 HOH A2150 SITE 1 AC4 4 LYS A 105 LYS A 189 GLN A 213 HOH A2126 SITE 1 AC5 4 GLU A 100 GLU A 133 ARG A 134 HOH A2190 CRYST1 53.147 61.117 69.390 90.00 93.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018816 0.000000 0.001026 0.00000 SCALE2 0.000000 0.016362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014433 0.00000