HEADER RECOMBINATION 18-DEC-15 5FRM TITLE CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN TITLE 2 COMPLEX WITH MAGNESIUM AND THE INSTI XZ384 (COMPOUND 4A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PFV INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PRO-POL POLYPROTEIN PR125POL, P87PRO-RT-RNASEH, P65PRO-RT, COMPND 5 P42IN, PFV INTEGRASE; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP COMPND 9 *TP*CP*GP*CP*A)-3'; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP *AP*CP*A)- COMPND 14 3'; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SPUMARETROVIRUS; SOURCE 3 ORGANISM_TAXID: 11963; SOURCE 4 STRAIN: HSRV2; SOURCE 5 VARIANT: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PC2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSSH6P-PFV-INFL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS RECOMBINATION, VIRAL PROTEIN/DNA, PROTEIN-DNA COMPLEX, TETRAMER, DNA KEYWDS 2 INTEGRATION, ENDONUCLEASE, METAL-BINDING, MULTIFUNCTIONAL ENZYME, KEYWDS 3 NUCLEASE, NUCLEOTIDYLTRANSFERASE, NUCLEUS, TRANSFERASE, VIRAL KEYWDS 4 NUCLEOPROTEIN, VIRION, DNA- BINDING, ZINC BINDING, HHCC MOTIF, VIRAL KEYWDS 5 PROTEIN, INHIBITOR, DNA-BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.P.MASKELL,V.E.PYE,P.CHEREPANOV REVDAT 6 10-JAN-24 5FRM 1 REMARK LINK REVDAT 5 10-APR-19 5FRM 1 SOURCE REVDAT 4 06-FEB-19 5FRM 1 REMARK REVDAT 3 30-JAN-19 5FRM 1 REMARK REVDAT 2 27-APR-16 5FRM 1 JRNL REVDAT 1 17-FEB-16 5FRM 0 JRNL AUTH X.Z.ZHAO,S.J.SMITH,D.P.MASKELL,M.METIFIOT,V.E.PYE,K.FESEN, JRNL AUTH 2 C.MARCHAND,Y.POMMIER,P.CHEREPANOV,S.H.HUGHES,T.R.J.BURKE JRNL TITL HIV-1 INTEGRASE STRAND TRANSFER INHIBITORS WITH REDUCED JRNL TITL 2 SUSCEPTIBILITY TO DRUG RESISTANT MUTANT INTEGRASES. JRNL REF ACS CHEM.BIOL. V. 11 1074 2016 JRNL REFN ISSN 1554-8929 JRNL PMID 26808478 JRNL DOI 10.1021/ACSCHEMBIO.5B00948 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9054 - 8.0054 1.00 3032 159 0.1719 0.1591 REMARK 3 2 8.0054 - 6.3585 1.00 3071 141 0.1603 0.1680 REMARK 3 3 6.3585 - 5.5560 1.00 3033 153 0.1771 0.1999 REMARK 3 4 5.5560 - 5.0486 1.00 3019 172 0.1623 0.1907 REMARK 3 5 5.0486 - 4.6871 1.00 3048 165 0.1463 0.1493 REMARK 3 6 4.6871 - 4.4109 1.00 3044 165 0.1435 0.1526 REMARK 3 7 4.4109 - 4.1901 1.00 3031 185 0.1464 0.1465 REMARK 3 8 4.1901 - 4.0078 1.00 3045 173 0.1548 0.1669 REMARK 3 9 4.0078 - 3.8536 1.00 3010 167 0.1808 0.2169 REMARK 3 10 3.8536 - 3.7207 1.00 3023 172 0.1840 0.2007 REMARK 3 11 3.7207 - 3.6044 1.00 3062 149 0.1840 0.2236 REMARK 3 12 3.6044 - 3.5014 1.00 3034 158 0.2038 0.2200 REMARK 3 13 3.5014 - 3.4092 1.00 3060 164 0.2047 0.2497 REMARK 3 14 3.4092 - 3.3261 1.00 2985 197 0.1989 0.2530 REMARK 3 15 3.3261 - 3.2505 1.00 3078 123 0.2060 0.2446 REMARK 3 16 3.2505 - 3.1813 1.00 3050 156 0.2200 0.2360 REMARK 3 17 3.1813 - 3.1177 1.00 3058 158 0.2226 0.2697 REMARK 3 18 3.1177 - 3.0588 1.00 3001 145 0.2297 0.2592 REMARK 3 19 3.0588 - 3.0042 1.00 3073 155 0.2482 0.2466 REMARK 3 20 3.0042 - 2.9533 1.00 3065 125 0.2349 0.2911 REMARK 3 21 2.9533 - 2.9057 1.00 3061 164 0.2455 0.3086 REMARK 3 22 2.9057 - 2.8610 1.00 3005 177 0.2574 0.2783 REMARK 3 23 2.8610 - 2.8189 1.00 3039 194 0.2473 0.3143 REMARK 3 24 2.8189 - 2.7792 1.00 3039 160 0.2474 0.2969 REMARK 3 25 2.7792 - 2.7416 1.00 3057 156 0.2701 0.2938 REMARK 3 26 2.7416 - 2.7060 1.00 3009 171 0.2792 0.3302 REMARK 3 27 2.7060 - 2.6722 1.00 3055 175 0.2893 0.2893 REMARK 3 28 2.6722 - 2.6400 1.00 2995 185 0.2887 0.3281 REMARK 3 29 2.6400 - 2.6093 1.00 3044 156 0.2894 0.3069 REMARK 3 30 2.6093 - 2.5800 1.00 3036 156 0.3010 0.3333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5413 REMARK 3 ANGLE : 0.643 7537 REMARK 3 CHIRALITY : 0.043 835 REMARK 3 PLANARITY : 0.005 820 REMARK 3 DIHEDRAL : 15.722 3086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:98) REMARK 3 ORIGIN FOR THE GROUP (A): -70.2920 26.5289 -57.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.7746 T22: 0.8822 REMARK 3 T33: 0.9334 T12: -0.0993 REMARK 3 T13: -0.0811 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 1.8287 L22: 1.9197 REMARK 3 L33: 2.0683 L12: 0.4190 REMARK 3 L13: -0.9733 L23: 1.4149 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.1879 S13: -0.1325 REMARK 3 S21: -0.2890 S22: -0.1845 S23: 0.6683 REMARK 3 S31: 0.0148 S32: -0.8090 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 99:280) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0186 36.6149 -8.5544 REMARK 3 T TENSOR REMARK 3 T11: 0.6384 T22: 0.6482 REMARK 3 T33: 0.6542 T12: -0.0245 REMARK 3 T13: 0.0587 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.5721 L22: 0.3155 REMARK 3 L33: 1.5827 L12: 0.1741 REMARK 3 L13: 0.5388 L23: 0.2764 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.1125 S13: -0.0963 REMARK 3 S21: 0.0261 S22: -0.0063 S23: 0.0080 REMARK 3 S31: 0.2578 S32: 0.0022 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 281:316) REMARK 3 ORIGIN FOR THE GROUP (A): -47.0080 50.7067 -2.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.7456 T22: 0.7919 REMARK 3 T33: 0.8583 T12: -0.0085 REMARK 3 T13: 0.0630 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.7992 L22: 0.4264 REMARK 3 L33: 0.6718 L12: -0.1763 REMARK 3 L13: -0.2717 L23: -0.0844 REMARK 3 S TENSOR REMARK 3 S11: -0.2628 S12: -0.3552 S13: 0.1652 REMARK 3 S21: -0.1453 S22: -0.0112 S23: 0.1555 REMARK 3 S31: -0.5657 S32: -0.4531 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 317:345) REMARK 3 ORIGIN FOR THE GROUP (A): -52.5817 24.2462 -29.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.7507 T22: 0.7330 REMARK 3 T33: 0.7609 T12: -0.1649 REMARK 3 T13: 0.0560 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.5383 L22: 0.1085 REMARK 3 L33: 0.5530 L12: 0.0972 REMARK 3 L13: 0.3013 L23: -0.1696 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.3846 S13: 0.0844 REMARK 3 S21: -0.0435 S22: 0.0656 S23: 0.2163 REMARK 3 S31: 0.5808 S32: 0.0597 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 346:375) REMARK 3 ORIGIN FOR THE GROUP (A): -55.6955 26.3073 -24.0708 REMARK 3 T TENSOR REMARK 3 T11: 0.8758 T22: 0.7580 REMARK 3 T33: 0.7653 T12: -0.1795 REMARK 3 T13: 0.0874 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.0003 L22: 0.2340 REMARK 3 L33: 0.9355 L12: 0.4022 REMARK 3 L13: -0.2582 L23: -0.3509 REMARK 3 S TENSOR REMARK 3 S11: -0.1705 S12: -0.3090 S13: -0.3529 REMARK 3 S21: -0.0458 S22: -0.0566 S23: 0.0366 REMARK 3 S31: 0.7064 S32: -0.3735 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 116:212) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8490 40.9529 13.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.6574 T22: 0.8441 REMARK 3 T33: 0.6271 T12: 0.0184 REMARK 3 T13: 0.0396 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 3.7265 L22: 1.3802 REMARK 3 L33: 3.0200 L12: -0.4682 REMARK 3 L13: 0.2167 L23: -0.5516 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: -0.3359 S13: -0.0093 REMARK 3 S21: -0.0336 S22: -0.0198 S23: -0.1023 REMARK 3 S31: 0.0350 S32: 0.4191 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 213:277) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7637 33.0033 18.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.8617 T22: 1.0225 REMARK 3 T33: 0.7030 T12: -0.0304 REMARK 3 T13: 0.0853 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.2716 L22: 2.1979 REMARK 3 L33: 2.1039 L12: 0.4513 REMARK 3 L13: 0.2265 L23: -0.7639 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: -0.8158 S13: -0.2511 REMARK 3 S21: 0.4646 S22: 0.0974 S23: 0.0252 REMARK 3 S31: 0.1984 S32: -0.1106 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 278:299) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2731 19.0401 26.9497 REMARK 3 T TENSOR REMARK 3 T11: 1.7612 T22: 1.5930 REMARK 3 T33: 1.6994 T12: -0.1570 REMARK 3 T13: 0.0368 T23: 0.1070 REMARK 3 L TENSOR REMARK 3 L11: 0.2338 L22: 0.2677 REMARK 3 L33: -0.0042 L12: 0.2832 REMARK 3 L13: 0.0730 L23: 0.0693 REMARK 3 S TENSOR REMARK 3 S11: -0.3600 S12: -0.4683 S13: 0.0103 REMARK 3 S21: 0.5723 S22: 0.4653 S23: 0.6180 REMARK 3 S31: 0.8321 S32: -0.7030 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -50.9739 32.5975 -13.2903 REMARK 3 T TENSOR REMARK 3 T11: 0.9343 T22: 0.9317 REMARK 3 T33: 0.8869 T12: -0.2366 REMARK 3 T13: 0.0573 T23: 0.1530 REMARK 3 L TENSOR REMARK 3 L11: 0.4326 L22: 0.3713 REMARK 3 L33: 0.3280 L12: -0.3066 REMARK 3 L13: 0.0508 L23: 0.1752 REMARK 3 S TENSOR REMARK 3 S11: -0.1459 S12: -0.6695 S13: -0.9037 REMARK 3 S21: 1.1162 S22: 0.1975 S23: -0.3377 REMARK 3 S31: 1.1030 S32: -1.1359 S33: -0.0006 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 5:19) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8950 66.3557 -14.1082 REMARK 3 T TENSOR REMARK 3 T11: 0.8416 T22: 0.6830 REMARK 3 T33: 0.8612 T12: -0.0158 REMARK 3 T13: 0.0097 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: -0.0349 L22: 0.4854 REMARK 3 L33: 0.4154 L12: 0.5326 REMARK 3 L13: -0.2924 L23: -0.3187 REMARK 3 S TENSOR REMARK 3 S11: 0.1553 S12: -0.0279 S13: 0.1606 REMARK 3 S21: 0.1173 S22: -0.2303 S23: 0.2310 REMARK 3 S31: -0.4911 S32: -0.2245 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN D AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0224 80.2822 -13.0934 REMARK 3 T TENSOR REMARK 3 T11: 1.1159 T22: 0.7764 REMARK 3 T33: 0.9838 T12: -0.0241 REMARK 3 T13: 0.1225 T23: -0.0597 REMARK 3 L TENSOR REMARK 3 L11: 0.2155 L22: 0.5145 REMARK 3 L33: 0.5564 L12: 0.1386 REMARK 3 L13: 0.2631 L23: -0.3143 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.3267 S13: 0.2154 REMARK 3 S21: 0.2174 S22: -0.2751 S23: 0.1817 REMARK 3 S31: 0.3100 S32: -0.3504 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN D AND RESID 8:17) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5779 52.1534 -19.6226 REMARK 3 T TENSOR REMARK 3 T11: 0.7095 T22: 0.6635 REMARK 3 T33: 0.7589 T12: -0.0534 REMARK 3 T13: -0.0061 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.3797 L22: 0.3297 REMARK 3 L33: 0.4603 L12: 0.3837 REMARK 3 L13: 0.2338 L23: -0.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.2107 S12: 0.3746 S13: 0.0240 REMARK 3 S21: -0.0116 S22: -0.6108 S23: -0.0344 REMARK 3 S31: -0.0492 S32: -0.2964 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50773 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4BDZ REMARK 200 REMARK 200 REMARK: PROTEIN AND DNA COMPONENTS USED FROM 4BDZ REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35 M AMMONIUM SULFATE, 25% (V/V) REMARK 280 GLYCEROL, 4.8% (V/V) 1,6-HEXANEDIOL, 50 MM MES-NAOH, 1MM EDTA, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.76400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 79.86850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.86850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.88200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.86850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 79.86850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.64600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.86850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.86850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.88200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 79.86850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.86850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.64600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.76400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -346.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.76400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 CYS A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ASN A 376 REMARK 465 GLY A 377 REMARK 465 THR A 378 REMARK 465 THR A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 THR A 382 REMARK 465 ALA A 383 REMARK 465 THR A 384 REMARK 465 MET A 385 REMARK 465 ASP A 386 REMARK 465 HIS A 387 REMARK 465 LEU A 388 REMARK 465 GLU A 389 REMARK 465 LYS A 390 REMARK 465 ASN A 391 REMARK 465 GLU A 392 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 CYS B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 13 REMARK 465 GLN B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 TYR B 20 REMARK 465 ILE B 21 REMARK 465 LYS B 22 REMARK 465 GLY B 23 REMARK 465 TYR B 24 REMARK 465 PRO B 25 REMARK 465 LYS B 26 REMARK 465 GLN B 27 REMARK 465 TYR B 28 REMARK 465 THR B 29 REMARK 465 TYR B 30 REMARK 465 PHE B 31 REMARK 465 LEU B 32 REMARK 465 GLU B 33 REMARK 465 ASP B 34 REMARK 465 GLY B 35 REMARK 465 LYS B 36 REMARK 465 VAL B 37 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLY B 44 REMARK 465 VAL B 45 REMARK 465 LYS B 46 REMARK 465 ILE B 47 REMARK 465 ILE B 48 REMARK 465 PRO B 49 REMARK 465 PRO B 50 REMARK 465 GLN B 51 REMARK 465 SER B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 GLN B 55 REMARK 465 LYS B 56 REMARK 465 ILE B 57 REMARK 465 VAL B 58 REMARK 465 LEU B 59 REMARK 465 GLN B 60 REMARK 465 ALA B 61 REMARK 465 HIS B 62 REMARK 465 ASN B 63 REMARK 465 LEU B 64 REMARK 465 ALA B 65 REMARK 465 HIS B 66 REMARK 465 THR B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 GLU B 70 REMARK 465 ALA B 71 REMARK 465 THR B 72 REMARK 465 LEU B 73 REMARK 465 LEU B 74 REMARK 465 LYS B 75 REMARK 465 ILE B 76 REMARK 465 ALA B 77 REMARK 465 ASN B 78 REMARK 465 LEU B 79 REMARK 465 TYR B 80 REMARK 465 TRP B 81 REMARK 465 TRP B 82 REMARK 465 PRO B 83 REMARK 465 ASN B 84 REMARK 465 MET B 85 REMARK 465 ARG B 86 REMARK 465 LYS B 87 REMARK 465 ASP B 88 REMARK 465 VAL B 89 REMARK 465 VAL B 90 REMARK 465 LYS B 91 REMARK 465 GLN B 92 REMARK 465 LEU B 93 REMARK 465 GLY B 94 REMARK 465 ARG B 95 REMARK 465 CYS B 96 REMARK 465 GLN B 97 REMARK 465 GLN B 98 REMARK 465 CYS B 99 REMARK 465 LEU B 100 REMARK 465 ILE B 101 REMARK 465 THR B 102 REMARK 465 ASN B 103 REMARK 465 ALA B 104 REMARK 465 SER B 105 REMARK 465 ASN B 106 REMARK 465 LYS B 107 REMARK 465 ALA B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 PRO B 111 REMARK 465 ILE B 112 REMARK 465 LEU B 113 REMARK 465 ARG B 114 REMARK 465 PRO B 115 REMARK 465 ARG B 299 REMARK 465 THR B 300 REMARK 465 SER B 301 REMARK 465 LEU B 302 REMARK 465 TYR B 303 REMARK 465 HIS B 304 REMARK 465 PRO B 305 REMARK 465 SER B 306 REMARK 465 THR B 307 REMARK 465 PRO B 308 REMARK 465 PRO B 309 REMARK 465 ALA B 310 REMARK 465 SER B 311 REMARK 465 SER B 312 REMARK 465 ARG B 313 REMARK 465 SER B 314 REMARK 465 TRP B 315 REMARK 465 SER B 316 REMARK 465 PRO B 317 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 GLY B 320 REMARK 465 GLN B 321 REMARK 465 LEU B 322 REMARK 465 VAL B 323 REMARK 465 GLN B 324 REMARK 465 GLU B 325 REMARK 465 ARG B 326 REMARK 465 VAL B 327 REMARK 465 ALA B 328 REMARK 465 ARG B 329 REMARK 465 PRO B 330 REMARK 465 ALA B 331 REMARK 465 SER B 332 REMARK 465 LEU B 333 REMARK 465 ARG B 334 REMARK 465 PRO B 335 REMARK 465 ARG B 336 REMARK 465 TRP B 337 REMARK 465 HIS B 338 REMARK 465 LYS B 339 REMARK 465 PRO B 340 REMARK 465 SER B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 LEU B 344 REMARK 465 LYS B 345 REMARK 465 VAL B 346 REMARK 465 LEU B 347 REMARK 465 ASN B 348 REMARK 465 PRO B 349 REMARK 465 ARG B 350 REMARK 465 THR B 351 REMARK 465 VAL B 352 REMARK 465 VAL B 353 REMARK 465 ILE B 354 REMARK 465 LEU B 355 REMARK 465 ASP B 356 REMARK 465 HIS B 357 REMARK 465 LEU B 358 REMARK 465 GLY B 359 REMARK 465 ASN B 360 REMARK 465 ASN B 361 REMARK 465 ARG B 362 REMARK 465 THR B 363 REMARK 465 VAL B 364 REMARK 465 SER B 365 REMARK 465 ILE B 366 REMARK 465 ASP B 367 REMARK 465 ASN B 368 REMARK 465 LEU B 369 REMARK 465 LYS B 370 REMARK 465 PRO B 371 REMARK 465 THR B 372 REMARK 465 SER B 373 REMARK 465 HIS B 374 REMARK 465 GLN B 375 REMARK 465 ASN B 376 REMARK 465 GLY B 377 REMARK 465 THR B 378 REMARK 465 THR B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 THR B 382 REMARK 465 ALA B 383 REMARK 465 THR B 384 REMARK 465 MET B 385 REMARK 465 ASP B 386 REMARK 465 HIS B 387 REMARK 465 LEU B 388 REMARK 465 GLU B 389 REMARK 465 LYS B 390 REMARK 465 ASN B 391 REMARK 465 GLU B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 LEU B 292 CG CD1 CD2 REMARK 470 LEU B 294 CG CD1 CD2 REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 GLN B 296 CG CD OE1 NE2 REMARK 470 ILE B 298 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 174 0.41 -69.59 REMARK 500 GLN A 186 34.26 -92.59 REMARK 500 HIS A 213 71.37 -155.93 REMARK 500 SER A 217 32.40 -93.93 REMARK 500 ARG A 329 73.80 -118.81 REMARK 500 GLN B 186 40.52 -83.00 REMARK 500 SER B 216 -86.16 -142.17 REMARK 500 PHE B 278 79.05 -103.17 REMARK 500 ASN B 280 89.82 -66.87 REMARK 500 LEU B 284 -23.39 78.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 66 ND1 106.6 REMARK 620 3 CYS A 96 SG 107.5 107.5 REMARK 620 4 CYS A 99 SG 99.8 117.9 116.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1377 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 ASP A 185 OD2 85.4 REMARK 620 3 HOH A2027 O 89.1 81.3 REMARK 620 4 HOH A2028 O 83.0 160.2 82.5 REMARK 620 5 WA5 D1018 NAN 163.6 96.4 107.3 99.3 REMARK 620 6 WA5 D1018 OAD 83.6 101.3 172.0 93.3 80.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1378 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD2 REMARK 620 2 GLU A 221 OE1 102.6 REMARK 620 3 GLU A 221 OE2 91.7 62.8 REMARK 620 4 HOH A2029 O 80.0 102.4 161.2 REMARK 620 5 WA5 D1018 OAD 90.6 155.7 96.9 99.9 REMARK 620 6 WA5 D1018 OAC 169.2 86.1 86.8 104.5 79.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WA5 D 1018 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1383 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1387 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1020 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1388 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FRN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN REMARK 900 COMPLEX WITH MAGNESIUM AND THE INSTI XZ419 (COMPOUND 4C) REMARK 900 RELATED ID: 5FRO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN REMARK 900 COMPLEX WITH MAGNESIUM AND THE INSTI XZ446 (COMPOUND 4F) REMARK 999 REMARK 999 SEQUENCE REMARK 999 SYNTHETIC CONSTRUCT DBREF 5FRM A 1 392 UNP P14350 POL_FOAMV 752 1143 DBREF 5FRM B 1 392 UNP P14350 POL_FOAMV 752 1143 DBREF 5FRM C 1 19 PDB 5FRM 5FRM 1 19 DBREF 5FRM D 1 17 PDB 5FRM 5FRM 1 17 SEQADV 5FRM GLY A -2 UNP P14350 EXPRESSION TAG SEQADV 5FRM PRO A -1 UNP P14350 EXPRESSION TAG SEQADV 5FRM GLY A 0 UNP P14350 EXPRESSION TAG SEQADV 5FRM SER A 217 UNP P14350 GLY 968 VARIANT SEQADV 5FRM GLY A 218 UNP P14350 SER 969 VARIANT SEQADV 5FRM GLY B -2 UNP P14350 EXPRESSION TAG SEQADV 5FRM PRO B -1 UNP P14350 EXPRESSION TAG SEQADV 5FRM GLY B 0 UNP P14350 EXPRESSION TAG SEQADV 5FRM SER B 217 UNP P14350 GLY 968 VARIANT SEQADV 5FRM GLY B 218 UNP P14350 SER 969 VARIANT SEQRES 1 A 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 A 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 A 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 A 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 A 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 A 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 A 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 A 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 A 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 A 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 A 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 A 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 A 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 A 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 A 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 A 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 A 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 A 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 A 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 A 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 A 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 A 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 A 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 A 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 A 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 A 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 A 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 A 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 A 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 A 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 A 395 LEU GLU LYS ASN GLU SEQRES 1 B 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 B 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 B 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 B 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 B 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 B 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 B 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 B 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 B 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 B 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 B 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 B 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 B 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 B 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 B 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 B 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 B 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 B 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 B 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 B 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 B 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 B 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 B 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 B 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 B 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 B 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 B 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 B 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 B 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 B 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 B 395 LEU GLU LYS ASN GLU SEQRES 1 C 19 DA DT DT DG DT DC DA DT DG DG DA DA DT SEQRES 2 C 19 DT DT DC DG DC DA SEQRES 1 D 17 DT DG DC DG DA DA DA DT DT DC DC DA DT SEQRES 2 D 17 DG DA DC DA HET ZN A1376 1 HET MG A1377 1 HET MG A1378 1 HET SO4 A1379 5 HET MES A1380 12 HET GOL A1381 6 HET GOL A1382 6 HET SO4 A1383 5 HET SO4 A1384 5 HET SO4 A1385 5 HET GOL A1386 6 HET GOL A1387 6 HET GOL A1388 6 HET SO4 B1299 5 HET GOL B1300 6 HET GOL B1301 6 HET GOL C1020 6 HET WA5 D1018 25 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM WA5 4-AZANYLIDENE-N-[[2,4-BIS(FLUORANYL)PHENYL]METHYL]-1- HETNAM 2 WA5 OXIDANYL-2-OXIDANYLIDENE-1,8-NAPHTHYRIDINE-3- HETNAM 3 WA5 CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN ZN 2+ FORMUL 6 MG 2(MG 2+) FORMUL 8 SO4 5(O4 S 2-) FORMUL 9 MES C6 H13 N O4 S FORMUL 10 GOL 8(C3 H8 O3) FORMUL 22 WA5 C16 H12 F2 N4 O3 FORMUL 23 HOH *135(H2 O) HELIX 1 1 ASP A 9 GLY A 18 1 10 HELIX 2 2 PRO A 50 SER A 52 5 3 HELIX 3 3 ASP A 53 LEU A 64 1 12 HELIX 4 4 GLY A 68 TYR A 80 1 13 HELIX 5 5 ASN A 84 GLY A 94 1 11 HELIX 6 6 CYS A 96 ASN A 103 1 8 HELIX 7 7 SER A 162 THR A 174 1 13 HELIX 8 8 GLY A 187 SER A 192 1 6 HELIX 9 9 SER A 192 ARG A 202 1 11 HELIX 10 10 HIS A 213 SER A 216 5 4 HELIX 11 11 SER A 217 LEU A 235 1 19 HELIX 12 12 TRP A 242 ASP A 244 5 3 HELIX 13 13 LEU A 245 ASN A 255 1 11 HELIX 14 14 THR A 264 GLY A 271 1 8 HELIX 15 15 THR A 287 SER A 301 1 15 HELIX 16 16 SER B 162 THR B 174 1 13 HELIX 17 17 GLY B 187 SER B 192 1 6 HELIX 18 18 SER B 192 ARG B 202 1 11 HELIX 19 19 SER B 217 VAL B 236 1 20 HELIX 20 20 LEU B 245 ASN B 255 1 11 HELIX 21 21 THR B 264 GLY B 271 1 8 HELIX 22 22 THR B 287 ILE B 298 1 12 SHEET 1 AA 3 TYR A 30 GLU A 33 0 SHEET 2 AA 3 LYS A 36 ARG A 41 -1 O LYS A 36 N GLU A 33 SHEET 3 AA 3 GLY A 44 ILE A 47 -1 O GLY A 44 N ARG A 41 SHEET 1 AB 2 ALA A 108 SER A 109 0 SHEET 2 AB 2 SER A 314 TRP A 315 1 N TRP A 315 O ALA A 108 SHEET 1 AC 5 THR A 153 THR A 158 0 SHEET 2 AC 5 TYR A 141 ASP A 147 -1 O TYR A 141 N THR A 158 SHEET 3 AC 5 LYS A 124 ILE A 130 -1 O PHE A 126 N VAL A 146 SHEET 4 AC 5 VAL A 181 SER A 184 1 O VAL A 181 N PHE A 125 SHEET 5 AC 5 HIS A 205 PHE A 208 1 O HIS A 205 N ILE A 182 SHEET 1 AD 5 ASN A 361 SER A 365 0 SHEET 2 AD 5 THR A 351 LEU A 355 -1 O VAL A 352 N VAL A 364 SHEET 3 AD 5 SER A 341 ASN A 348 -1 O THR A 342 N LEU A 355 SHEET 4 AD 5 LEU A 322 GLU A 325 -1 O VAL A 323 N SER A 341 SHEET 5 AD 5 LEU A 369 PRO A 371 -1 O LYS A 370 N GLN A 324 SHEET 1 BA 5 THR B 153 THR B 158 0 SHEET 2 BA 5 TYR B 141 ASP B 147 -1 O TYR B 141 N THR B 158 SHEET 3 BA 5 LYS B 124 ILE B 130 -1 O PHE B 126 N VAL B 146 SHEET 4 BA 5 VAL B 181 SER B 184 1 O VAL B 181 N PHE B 125 SHEET 5 BA 5 HIS B 205 PHE B 208 1 O HIS B 205 N ILE B 182 LINK NE2 HIS A 62 ZN ZN A1376 1555 1555 2.02 LINK ND1 HIS A 66 ZN ZN A1376 1555 1555 2.02 LINK SG CYS A 96 ZN ZN A1376 1555 1555 2.26 LINK SG CYS A 99 ZN ZN A1376 1555 1555 2.28 LINK OD1 ASP A 128 MG MG A1377 1555 1555 2.21 LINK OD2 ASP A 128 MG MG A1378 1555 1555 2.13 LINK OD2 ASP A 185 MG MG A1377 1555 1555 2.16 LINK OE1 GLU A 221 MG MG A1378 1555 1555 2.11 LINK OE2 GLU A 221 MG MG A1378 1555 1555 2.09 LINK MG MG A1377 O HOH A2027 1555 1555 2.10 LINK MG MG A1377 O HOH A2028 1555 1555 2.10 LINK MG MG A1377 NAN WA5 D1018 1555 1555 1.97 LINK MG MG A1377 OAD WA5 D1018 1555 1555 2.12 LINK MG MG A1378 O HOH A2029 1555 1555 2.07 LINK MG MG A1378 OAD WA5 D1018 1555 1555 1.98 LINK MG MG A1378 OAC WA5 D1018 1555 1555 2.12 CISPEP 1 GLY A 131 PRO A 132 0 3.20 CISPEP 2 GLY B 131 PRO B 132 0 3.38 SITE 1 AC1 4 HIS A 62 HIS A 66 CYS A 96 CYS A 99 SITE 1 AC2 5 ASP A 128 ASP A 185 HOH A2027 HOH A2028 SITE 2 AC2 5 WA5 D1018 SITE 1 AC3 4 ASP A 128 GLU A 221 HOH A2029 WA5 D1018 SITE 1 AC4 5 LYS B 219 ARG B 222 SER B 258 PRO B 259 SITE 2 AC4 5 VAL B 260 SITE 1 AC5 13 ASP A 128 ASP A 185 PRO A 214 GLN A 215 SITE 2 AC5 13 GLU A 221 MG A1377 MG A1378 MES A1380 SITE 3 AC5 13 SO4 A1383 HOH A2028 DG C 4 DC D 16 SITE 4 AC5 13 DA D 17 SITE 1 AC6 4 PRO A 135 SER A 136 GLN A 137 LYS A 241 SITE 1 AC7 6 GLN A 186 GLY A 187 PRO A 211 TYR A 212 SITE 2 AC7 6 SO4 A1383 WA5 D1018 SITE 1 AC8 5 SER A 225 THR A 232 ARG A 336 HOH A2017 SITE 2 AC8 5 DC D 16 SITE 1 AC9 5 GLN A 60 LEU A 79 TYR A 80 PRO A 277 SITE 2 AC9 5 PHE A 278 SITE 1 BC1 5 GLY A 187 ALA A 188 MES A1380 DA D 17 SITE 2 BC1 5 WA5 D1018 SITE 1 BC2 4 LYS A 228 SER A 332 LEU A 333 ARG A 336 SITE 1 BC3 3 HIS A 338 LYS A 339 HIS A 357 SITE 1 BC4 3 THR A 163 SER A 164 HOH A2037 SITE 1 BC5 5 LEU A 292 GLN A 296 TYR B 263 GLY B 271 SITE 2 BC5 5 ASP B 273 SITE 1 BC6 2 ASP A 116 DT C 3 SITE 1 BC7 7 TYR A 303 GOL A1388 HOH A2067 DC C 6 SITE 2 BC7 7 DA C 7 DT C 8 DC D 11 SITE 1 BC8 6 SER A 175 LEU B 155 PRO B 157 TYR B 243 SITE 2 BC8 6 PRO B 247 GLN B 250 SITE 1 BC9 6 ARG A 114 TYR A 303 PRO A 305 HOH A2095 SITE 2 BC9 6 DC C 6 GOL C1020 CRYST1 159.737 159.737 123.528 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008095 0.00000