HEADER HYDROLASE INHIBITOR 08-JAN-16 5FT0 TITLE CRYSTAL STRUCTURE OF GP37(DIP) FROM BACTERIOPHAGE PHIKZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP37; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHIKZ037; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PHIKZ; SOURCE 3 ORGANISM_TAXID: 169683; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE INHIBITOR, GP37, DIP, PHIKZ, BACTERIOPHAGE, RNASE E, KEYWDS 2 RIBONUCLEASE INHIBITOR, RNA DEGRADOSOME EXPDTA X-RAY DIFFRACTION AUTHOR A.VAN DEN BOSSCHE,S.W.HARDWICK,P.J.CEYSSENS,H.HENDRIX,M.VOET, AUTHOR 2 T.DENDOOVEN,K.J.BANDYRA,M.DE MAEYER,A.AERTSEN,J.P.NOBEN,B.F.LUISI, AUTHOR 3 R.LAVIGNE REVDAT 2 22-MAR-17 5FT0 1 JRNL REVDAT 1 03-AUG-16 5FT0 0 JRNL AUTH A.VAN DEN BOSSCHE,S.W.HARDWICK,P.J.CEYSSENS,H.HENDRIX, JRNL AUTH 2 M.VOET,T.DENDOOVEN,K.J.BANDYRA,M.DE MAEYER,A.AERTSEN, JRNL AUTH 3 J.P.NOBEN,B.F.LUISI,R.LAVIGNE JRNL TITL STRUCTURAL ELUCIDATION OF A NOVEL MECHANISM FOR THE JRNL TITL 2 BACTERIOPHAGE-BASED INHIBITION OF THE RNA DEGRADOSOME. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27447594 JRNL DOI 10.7554/ELIFE.16413 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0353 - 5.2998 0.99 2709 118 0.1953 0.2312 REMARK 3 2 5.2998 - 4.2075 1.00 2617 135 0.1545 0.1683 REMARK 3 3 4.2075 - 3.6759 0.99 2603 152 0.1637 0.1884 REMARK 3 4 3.6759 - 3.3400 1.00 2565 163 0.1713 0.1721 REMARK 3 5 3.3400 - 3.1006 1.00 2607 125 0.1887 0.2273 REMARK 3 6 3.1006 - 2.9178 1.00 2600 141 0.1978 0.2252 REMARK 3 7 2.9178 - 2.7717 1.00 2573 146 0.2134 0.2449 REMARK 3 8 2.7717 - 2.6511 1.00 2591 150 0.2183 0.2495 REMARK 3 9 2.6511 - 2.5490 1.00 2568 150 0.2251 0.2485 REMARK 3 10 2.5490 - 2.4611 1.00 2628 116 0.2291 0.2942 REMARK 3 11 2.4611 - 2.3841 1.00 2566 140 0.2453 0.2725 REMARK 3 12 2.3841 - 2.3160 1.00 2583 120 0.2505 0.2812 REMARK 3 13 2.3160 - 2.2550 1.00 2598 121 0.2615 0.2951 REMARK 3 14 2.2550 - 2.2000 1.00 2588 148 0.2786 0.3208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4165 REMARK 3 ANGLE : 0.655 5671 REMARK 3 CHIRALITY : 0.049 647 REMARK 3 PLANARITY : 0.003 734 REMARK 3 DIHEDRAL : 12.683 2473 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: UNKNOWN LIGAND CAUTIOUSLY MODELLED AS REMARK 3 ARGININE CHAIN C REMARK 4 REMARK 4 5FT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-16. REMARK 100 THE PDBE ID CODE IS EBI-65984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97851 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 68.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM KH2PO4, 100 MM NAH2PO4, 100 MM REMARK 280 MES PH 6.0, 800 MM NACL, 0.2 M SODIUM THIOCYANATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.51000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 VAL A 257 REMARK 465 ARG A 258 REMARK 465 GLN A 259 REMARK 465 ASP A 260 REMARK 465 LEU A 261 REMARK 465 PRO A 262 REMARK 465 ALA A 263 REMARK 465 LYS A 264 REMARK 465 PHE A 265 REMARK 465 VAL A 266 REMARK 465 GLY A 267 REMARK 465 GLY A 268 REMARK 465 VAL A 269 REMARK 465 LEU A 270 REMARK 465 PHE A 271 REMARK 465 ASN A 272 REMARK 465 PHE A 273 REMARK 465 LYS A 274 REMARK 465 GLY A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 MSE B 1 REMARK 465 VAL B 118 REMARK 465 GLY B 119 REMARK 465 GLY B 120 REMARK 465 ARG B 258 REMARK 465 GLN B 259 REMARK 465 ASP B 260 REMARK 465 LEU B 261 REMARK 465 PRO B 262 REMARK 465 ALA B 263 REMARK 465 LYS B 264 REMARK 465 PHE B 265 REMARK 465 VAL B 266 REMARK 465 GLY B 267 REMARK 465 GLY B 268 REMARK 465 VAL B 269 REMARK 465 LEU B 270 REMARK 465 PHE B 271 REMARK 465 ASN B 272 REMARK 465 PHE B 273 REMARK 465 LYS B 274 REMARK 465 GLY B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 HIS A 53 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 122 CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 154 CD CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 THR B 2 OG1 CG2 REMARK 470 LYS B 122 CE NZ REMARK 470 LYS B 142 CD CE NZ REMARK 470 LYS B 145 CD CE NZ REMARK 470 LYS B 154 CE NZ REMARK 470 ASP B 156 CG OD1 OD2 REMARK 470 GLU B 160 CD OE1 OE2 REMARK 470 LYS B 167 CD CE NZ REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 470 LEU B 236 CG CD1 CD2 REMARK 470 ASN B 237 CG OD1 ND2 REMARK 470 SER B 238 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2051 O HOH A 2054 1.84 REMARK 500 O HOH A 2063 O HOH A 2119 1.85 REMARK 500 O HOH B 2006 O HOH B 2007 2.02 REMARK 500 O HOH A 2060 O HOH A 2062 2.05 REMARK 500 O HOH A 2023 O HOH B 2129 2.07 REMARK 500 O HOH B 2119 O HOH B 2123 2.09 REMARK 500 O HOH A 2035 O HOH A 2038 2.09 REMARK 500 O HOH A 2003 O HOH A 2015 2.11 REMARK 500 O HOH B 2074 O HOH B 2123 2.12 REMARK 500 O HOH B 2046 O HOH B 2047 2.12 REMARK 500 ND2 ASN B 121 O HOH A 2120 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2061 O HOH B 2106 1455 1.92 REMARK 500 O HOH A 2015 O HOH B 2011 1455 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 249 CB - CG - CD1 ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 170.49 53.27 REMARK 500 ASP B 166 160.98 74.37 REMARK 500 THR B 239 -120.61 67.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ARG B 1257 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1258 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 103 O REMARK 620 2 ASN A 100 O 77.5 REMARK 620 3 ILE A 97 O 92.5 64.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1258 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2066 O REMARK 620 2 ASN B 100 O 76.3 REMARK 620 3 ILE B 97 O 78.0 66.6 REMARK 620 4 HOH B2068 O 119.4 162.3 121.9 REMARK 620 5 TYR B 103 O 156.3 80.2 96.1 83.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A 1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG B 1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1258 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FT1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GP37(DIP) FROM BACTERIOPHAGE PHIKZ BOUND TO REMARK 900 RNASE E OF PSEUDOMONAS AERUGINOSA DBREF 5FT0 A 1 273 UNP Q8SDC5 Q8SDC5_BPDPK 1 273 DBREF 5FT0 B 1 273 UNP Q8SDC5 Q8SDC5_BPDPK 1 273 SEQADV 5FT0 LYS A 274 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 GLY A 275 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS A 276 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS A 277 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS A 278 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS A 279 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS A 280 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS A 281 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 LYS B 274 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 GLY B 275 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS B 276 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS B 277 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS B 278 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS B 279 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS B 280 UNP Q8SDC5 EXPRESSION TAG SEQADV 5FT0 HIS B 281 UNP Q8SDC5 EXPRESSION TAG SEQRES 1 A 281 MSE THR GLN PHE ASN ILE THR TRP GLU GLU GLN LEU GLN SEQRES 2 A 281 ALA LEU SER LYS LEU ASP GLY LEU HIS HIS PRO HIS LYS SEQRES 3 A 281 LEU GLU ASP ILE SER VAL HIS TRP VAL PHE ASN PRO VAL SEQRES 4 A 281 ASP ILE SER VAL PHE VAL THR CYS ALA THR MSE SER SER SEQRES 5 A 281 HIS ASN THR HIS TYR THR PHE LYS PRO GLN SER SER PRO SEQRES 6 A 281 ASP ASP ALA MSE VAL ARG GLU TYR VAL LEU SER ARG ILE SEQRES 7 A 281 ILE ALA ASP ASN LEU LYS TYR VAL ASP ASN LEU TYR LEU SEQRES 8 A 281 ALA ALA GLY ALA VAL ILE CYS GLY ASN ASP GLU TYR ILE SEQRES 9 A 281 SER ASP GLY ASN VAL VAL GLY ILE HIS ILE ALA ASP GLY SEQRES 10 A 281 VAL GLY GLY ASN LYS LEU ILE LEU PRO VAL ILE GLU PHE SEQRES 11 A 281 MSE PRO GLY VAL HIS VAL ASP ASP ILE SER ASP LYS LEU SEQRES 12 A 281 ILE LYS SER SER SER TYR GLN GLY ILE PHE LYS THR ASP SEQRES 13 A 281 ASN LEU GLU GLU PHE GLU PHE LEU VAL ASP LYS LYS ASN SEQRES 14 A 281 ALA ASN ASN VAL LYS GLU LEU ILE LEU ALA TYR THR ASP SEQRES 15 A 281 TYR PHE ALA ASN LYS LEU ALA PHE LYS ASP PRO ALA GLU SEQRES 16 A 281 PRO ALA VAL GLU MSE TYR GLN PHE ILE ASP ARG THR GLU SEQRES 17 A 281 VAL TYR PHE SER PHE GLU GLY CYS HIS PRO ASP VAL GLU SEQRES 18 A 281 GLU VAL LEU PHE THR ILE LYS ILE VAL ARG TYR ASN GLN SEQRES 19 A 281 PRO LEU ASN SER THR ALA MSE GLN VAL PHE LEU LYS ASN SEQRES 20 A 281 PRO LEU LEU SER HIS ILE ARG THR VAL VAL ARG GLN ASP SEQRES 21 A 281 LEU PRO ALA LYS PHE VAL GLY GLY VAL LEU PHE ASN PHE SEQRES 22 A 281 LYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 281 MSE THR GLN PHE ASN ILE THR TRP GLU GLU GLN LEU GLN SEQRES 2 B 281 ALA LEU SER LYS LEU ASP GLY LEU HIS HIS PRO HIS LYS SEQRES 3 B 281 LEU GLU ASP ILE SER VAL HIS TRP VAL PHE ASN PRO VAL SEQRES 4 B 281 ASP ILE SER VAL PHE VAL THR CYS ALA THR MSE SER SER SEQRES 5 B 281 HIS ASN THR HIS TYR THR PHE LYS PRO GLN SER SER PRO SEQRES 6 B 281 ASP ASP ALA MSE VAL ARG GLU TYR VAL LEU SER ARG ILE SEQRES 7 B 281 ILE ALA ASP ASN LEU LYS TYR VAL ASP ASN LEU TYR LEU SEQRES 8 B 281 ALA ALA GLY ALA VAL ILE CYS GLY ASN ASP GLU TYR ILE SEQRES 9 B 281 SER ASP GLY ASN VAL VAL GLY ILE HIS ILE ALA ASP GLY SEQRES 10 B 281 VAL GLY GLY ASN LYS LEU ILE LEU PRO VAL ILE GLU PHE SEQRES 11 B 281 MSE PRO GLY VAL HIS VAL ASP ASP ILE SER ASP LYS LEU SEQRES 12 B 281 ILE LYS SER SER SER TYR GLN GLY ILE PHE LYS THR ASP SEQRES 13 B 281 ASN LEU GLU GLU PHE GLU PHE LEU VAL ASP LYS LYS ASN SEQRES 14 B 281 ALA ASN ASN VAL LYS GLU LEU ILE LEU ALA TYR THR ASP SEQRES 15 B 281 TYR PHE ALA ASN LYS LEU ALA PHE LYS ASP PRO ALA GLU SEQRES 16 B 281 PRO ALA VAL GLU MSE TYR GLN PHE ILE ASP ARG THR GLU SEQRES 17 B 281 VAL TYR PHE SER PHE GLU GLY CYS HIS PRO ASP VAL GLU SEQRES 18 B 281 GLU VAL LEU PHE THR ILE LYS ILE VAL ARG TYR ASN GLN SEQRES 19 B 281 PRO LEU ASN SER THR ALA MSE GLN VAL PHE LEU LYS ASN SEQRES 20 B 281 PRO LEU LEU SER HIS ILE ARG THR VAL VAL ARG GLN ASP SEQRES 21 B 281 LEU PRO ALA LYS PHE VAL GLY GLY VAL LEU PHE ASN PHE SEQRES 22 B 281 LYS GLY HIS HIS HIS HIS HIS HIS MODRES 5FT0 MSE A 50 MET SELENOMETHIONINE MODRES 5FT0 MSE A 69 MET SELENOMETHIONINE MODRES 5FT0 MSE A 131 MET SELENOMETHIONINE MODRES 5FT0 MSE A 200 MET SELENOMETHIONINE MODRES 5FT0 MSE A 241 MET SELENOMETHIONINE MODRES 5FT0 MSE B 50 MET SELENOMETHIONINE MODRES 5FT0 MSE B 69 MET SELENOMETHIONINE MODRES 5FT0 MSE B 131 MET SELENOMETHIONINE MODRES 5FT0 MSE B 200 MET SELENOMETHIONINE MODRES 5FT0 MSE B 241 MET SELENOMETHIONINE HET MSE A 50 8 HET MSE A 69 8 HET MSE A 131 8 HET MSE A 200 8 HET MSE A 241 8 HET MSE B 50 8 HET MSE B 69 8 HET MSE B 131 8 HET MSE B 200 8 HET MSE B 241 8 HET ARG A1257 12 HET K A1258 1 HET ARG B1257 7 HET K B1258 1 HETNAM MSE SELENOMETHIONINE HETNAM ARG ARGININE HETNAM K POTASSIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 ARG 2(C6 H15 N4 O2 1+) FORMUL 4 K 2(K 1+) FORMUL 7 HOH *250(H2 O) HELIX 1 1 THR A 7 SER A 16 1 10 HELIX 2 2 ASP A 66 LEU A 83 1 18 HELIX 3 3 VAL A 86 GLY A 99 1 14 HELIX 4 4 HIS A 135 ASP A 138 5 4 HELIX 5 5 ILE A 139 SER A 147 1 9 HELIX 6 6 ASN A 157 LEU A 188 1 32 HELIX 7 7 SER A 238 VAL A 243 1 6 HELIX 8 8 PHE A 244 ASN A 247 5 4 HELIX 9 9 PRO A 248 ILE A 253 1 6 HELIX 10 10 THR B 7 SER B 16 1 10 HELIX 11 11 ASP B 66 LEU B 83 1 18 HELIX 12 12 VAL B 86 GLY B 99 1 14 HELIX 13 13 HIS B 135 ASP B 138 5 4 HELIX 14 14 ILE B 139 SER B 147 1 9 HELIX 15 15 ASN B 157 LEU B 188 1 32 HELIX 16 16 THR B 239 LYS B 246 1 8 HELIX 17 17 ASN B 247 ILE B 253 5 7 SHEET 1 AA 4 PHE A 4 ILE A 6 0 SHEET 2 AA 4 ILE A 30 ASN A 37 -1 O ILE A 30 N ILE A 6 SHEET 3 AA 4 SER A 42 ALA A 48 -1 O SER A 42 N ASN A 37 SHEET 4 AA 4 THR A 55 PHE A 59 -1 O THR A 55 N CYS A 47 SHEET 1 AB 7 TYR A 103 ASP A 106 0 SHEET 2 AB 7 VAL A 109 ALA A 115 -1 O VAL A 109 N ASP A 106 SHEET 3 AB 7 LYS A 122 PRO A 132 -1 O LEU A 123 N ILE A 114 SHEET 4 AB 7 VAL A 220 TYR A 232 -1 O THR A 226 N MSE A 131 SHEET 5 AB 7 ARG A 206 HIS A 217 -1 O THR A 207 N ARG A 231 SHEET 6 AB 7 ALA A 197 GLN A 202 -1 O ALA A 197 N SER A 212 SHEET 7 AB 7 TYR A 149 GLY A 151 -1 O TYR A 149 N GLN A 202 SHEET 1 AC 4 TYR A 103 ASP A 106 0 SHEET 2 AC 4 VAL A 109 ALA A 115 -1 O VAL A 109 N ASP A 106 SHEET 3 AC 4 LYS A 122 PRO A 132 -1 O LEU A 123 N ILE A 114 SHEET 4 AC 4 ARG B 254 VAL B 256 1 O ARG B 254 N ILE A 124 SHEET 1 AD 2 ARG A 254 VAL A 256 0 SHEET 2 AD 2 LYS B 122 PRO B 132 -1 O LYS B 122 N VAL A 256 SHEET 1 BA 7 TYR B 103 SER B 105 0 SHEET 2 BA 7 VAL B 109 ASP B 116 1 O GLY B 111 N ILE B 104 SHEET 3 BA 7 LYS B 122 PRO B 132 -1 O LEU B 123 N ILE B 114 SHEET 4 BA 7 VAL B 220 TYR B 232 -1 O THR B 226 N MSE B 131 SHEET 5 BA 7 ARG B 206 HIS B 217 -1 O THR B 207 N ARG B 231 SHEET 6 BA 7 ALA B 197 GLN B 202 -1 O ALA B 197 N SER B 212 SHEET 7 BA 7 TYR B 149 GLY B 151 -1 O TYR B 149 N GLN B 202 SHEET 1 BB 4 TYR B 103 SER B 105 0 SHEET 2 BB 4 VAL B 109 ASP B 116 1 O GLY B 111 N ILE B 104 SHEET 3 BB 4 LYS B 122 PRO B 132 -1 O LEU B 123 N ILE B 114 SHEET 4 BB 4 ARG A 254 VAL A 256 -1 O ARG A 254 N ILE B 124 SHEET 1 BC 4 PHE B 4 ILE B 6 0 SHEET 2 BC 4 ILE B 30 ASN B 37 -1 O ILE B 30 N ILE B 6 SHEET 3 BC 4 SER B 42 ALA B 48 -1 O SER B 42 N ASN B 37 SHEET 4 BC 4 THR B 55 PHE B 59 -1 O THR B 55 N CYS B 47 LINK C THR A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N SER A 51 1555 1555 1.34 LINK C ALA A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N VAL A 70 1555 1555 1.34 LINK C PHE A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N PRO A 132 1555 1555 1.33 LINK C GLU A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N TYR A 201 1555 1555 1.33 LINK C ALA A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N GLN A 242 1555 1555 1.34 LINK K K A1258 O TYR A 103 1555 1555 2.74 LINK K K A1258 O ASN A 100 1555 1555 2.82 LINK K K A1258 O ILE A 97 1555 1555 2.83 LINK C THR B 49 N MSE B 50 1555 1555 1.33 LINK C MSE B 50 N SER B 51 1555 1555 1.33 LINK C ALA B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N VAL B 70 1555 1555 1.34 LINK C PHE B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N PRO B 132 1555 1555 1.33 LINK C GLU B 199 N MSE B 200 1555 1555 1.33 LINK C MSE B 200 N TYR B 201 1555 1555 1.33 LINK C ALA B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N GLN B 242 1555 1555 1.33 LINK K K B1258 O HOH B2066 1555 1555 2.81 LINK K K B1258 O ASN B 100 1555 1555 2.75 LINK K K B1258 O ILE B 97 1555 1555 2.73 LINK K K B1258 O HOH B2068 1555 1555 2.66 LINK K K B1258 O TYR B 103 1555 1555 2.68 CISPEP 1 THR A 2 GLN A 3 0 3.60 CISPEP 2 HIS A 53 ASN A 54 0 0.08 SITE 1 AC1 4 PHE A 190 ASP A 192 ALA A 194 GLU A 214 SITE 1 AC2 3 ILE A 97 ASN A 100 TYR A 103 SITE 1 AC3 4 ASP B 138 GLU B 214 GLU B 222 LEU B 224 SITE 1 AC4 5 ILE B 97 ASN B 100 TYR B 103 HOH B2066 SITE 2 AC4 5 HOH B2068 CRYST1 72.040 65.020 85.400 90.00 107.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013881 0.000000 0.004425 0.00000 SCALE2 0.000000 0.015380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012290 0.00000