HEADER OXIDOREDUCTASE 27-JAN-16 5FUK TITLE CRYSTALLIZATION OF A DIMERIC HEME PEROXYGENASE FROM THE FUNGUS TITLE 2 MARASMIUS ROTULA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MROUPO; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.2.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARASMIUS ROTULA; SOURCE 3 ORGANISM_COMMON: PINWHEEL MUSHROOM; SOURCE 4 ORGANISM_TAXID: 182057; SOURCE 5 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM), ACCESS SOURCE 6 NUMBER DSMZ 25031 KEYWDS OXIDOREDUCTASE, PEROXIDASE/PEROXYGENASE, UNSPECIFIC/AROMATIC KEYWDS 2 PEROXYGENASE, HEME, GLYCOPROTEIN, DIMER, DILSUFIDE BRIDGE, KEYWDS 3 PROPRANOLOL EXPDTA X-RAY DIFFRACTION AUTHOR K.PIONTEK,E.STRITTMATTER,D.A.PLATTNER REVDAT 4 20-NOV-24 5FUK 1 REMARK REVDAT 3 10-JAN-24 5FUK 1 HETSYN REVDAT 2 29-JUL-20 5FUK 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 22-FEB-17 5FUK 0 JRNL AUTH K.PIONTEK,E.STRITTMATTER,D.A.PLATTNER JRNL TITL DIMERIC HEME PEROXYGENASE FROM MARASMIUS ROTULA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 75966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 366 REMARK 3 SOLVENT ATOMS : 643 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.02000 REMARK 3 B22 (A**2) : -1.25000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4108 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3844 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5614 ; 2.061 ; 2.066 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8816 ; 0.968 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.380 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;33.190 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;12.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4485 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1890 ; 1.961 ; 1.976 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1889 ; 1.961 ; 1.976 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2365 ; 2.810 ; 2.959 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2218 ; 3.062 ; 2.448 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5FUK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290066104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5FUJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED IN 18% PEG REMARK 280 4000, 15% GLYCEROL. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.33500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.33500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEM A 1235 O2 PLM A 1237 2.11 REMARK 500 FE HEM B 1235 O2 PLM B 1237 2.12 REMARK 500 O HOH A 2213 O HOH A 2216 2.18 REMARK 500 O HOH A 2316 O HOH A 2317 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 34 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG B 34 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 34 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 99 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 213 CG - CD - NE ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 213 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 19.35 -155.70 REMARK 500 THR A 83 -78.82 -90.15 REMARK 500 ASP B 71 18.18 -149.64 REMARK 500 THR B 83 -78.80 -88.90 REMARK 500 SER B 91 -0.50 -145.46 REMARK 500 ALA B 167 47.85 -104.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 1 ALA B 2 144.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2032 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2080 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A2153 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B2310 DISTANCE = 7.68 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PROTOPORPHYRIN IX CONTAINING FE (HEM): COORDINATED TO THE REMARK 600 PROTEIN VIA CYS17. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1235 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 HEM A1235 NA 91.2 REMARK 620 3 HEM A1235 NB 86.8 88.9 REMARK 620 4 HEM A1235 NC 91.5 177.3 91.2 REMARK 620 5 HEM A1235 ND 95.0 90.9 178.2 88.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1239 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 HIS A 86 O 83.2 REMARK 620 3 SER A 89 OG 175.0 92.2 REMARK 620 4 HEM A1235 O1D 99.6 88.1 82.4 REMARK 620 5 HOH A2163 O 89.6 172.4 95.0 90.8 REMARK 620 6 HOH A2164 O 88.6 87.2 89.1 170.1 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1235 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 17 SG REMARK 620 2 HEM B1235 NA 92.3 REMARK 620 3 HEM B1235 NB 86.3 89.6 REMARK 620 4 HEM B1235 NC 90.5 177.2 90.3 REMARK 620 5 HEM B1235 ND 95.4 90.3 178.2 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1239 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 85 OE2 REMARK 620 2 HIS B 86 O 85.0 REMARK 620 3 SER B 89 OG 175.6 91.6 REMARK 620 4 HEM B1235 O1D 100.1 89.5 82.7 REMARK 620 5 HOH B2137 O 89.1 88.7 88.0 170.4 REMARK 620 6 HOH B2138 O 91.1 175.2 92.5 88.5 94.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FUJ RELATED DB: PDB REMARK 900 CRYSTALLIZATION OF A DIMERIC HEME PEROXYGENASE FROM THE FUNGUS REMARK 900 MARASMIUS ROTULA DBREF 5FUK A 1 234 PDB 5FUK 5FUK 1 234 DBREF 5FUK B 1 234 PDB 5FUK 5FUK 1 234 SEQRES 1 A 234 SER ALA HIS PRO TRP LYS ALA PRO GLY PRO ASN ASP SER SEQRES 2 A 234 ARG GLY PRO CYS PRO GLY LEU ASN THR LEU ALA ASN HIS SEQRES 3 A 234 GLY PHE LEU PRO ARG ASN GLY ARG ASN ILE SER VAL PRO SEQRES 4 A 234 MET ILE VAL LYS ALA GLY PHE GLU GLY TYR ASN VAL GLN SEQRES 5 A 234 SER ASP ILE LEU ILE LEU ALA GLY LYS ILE GLY MET LEU SEQRES 6 A 234 THR SER ARG GLU ALA ASP THR ILE SER LEU GLU ASP LEU SEQRES 7 A 234 LYS LEU HIS GLY THR ILE GLU HIS ASP ALA SER LEU SER SEQRES 8 A 234 ARG GLU ASP VAL ALA ILE GLY ASP ASN LEU HIS PHE ASN SEQRES 9 A 234 GLU ALA ILE PHE THR THR LEU ALA ASN SER ASN PRO GLY SEQRES 10 A 234 ALA ASP VAL TYR ASN ILE SER SER ALA ALA GLN VAL GLN SEQRES 11 A 234 HIS ASP ARG LEU ALA ASP SER LEU ALA ARG ASN PRO ASN SEQRES 12 A 234 VAL THR ASN THR ASP LEU THR ALA THR ILE ARG SER SER SEQRES 13 A 234 GLU SER ALA PHE PHE LEU THR VAL MET SER ALA GLY ASP SEQRES 14 A 234 PRO LEU ARG GLY GLU ALA PRO LYS LYS PHE VAL ASN VAL SEQRES 15 A 234 PHE PHE ARG GLU GLU ARG MET PRO ILE LYS GLU GLY TRP SEQRES 16 A 234 LYS ARG SER THR THR PRO ILE THR ILE PRO LEU LEU GLY SEQRES 17 A 234 PRO ILE ILE GLU ARG ILE THR GLU LEU SER ASP TRP LYS SEQRES 18 A 234 PRO THR GLY ASP ASN CYS GLY ALA ILE VAL LEU SER PRO SEQRES 1 B 234 SER ALA HIS PRO TRP LYS ALA PRO GLY PRO ASN ASP SER SEQRES 2 B 234 ARG GLY PRO CYS PRO GLY LEU ASN THR LEU ALA ASN HIS SEQRES 3 B 234 GLY PHE LEU PRO ARG ASN GLY ARG ASN ILE SER VAL PRO SEQRES 4 B 234 MET ILE VAL LYS ALA GLY PHE GLU GLY TYR ASN VAL GLN SEQRES 5 B 234 SER ASP ILE LEU ILE LEU ALA GLY LYS ILE GLY MET LEU SEQRES 6 B 234 THR SER ARG GLU ALA ASP THR ILE SER LEU GLU ASP LEU SEQRES 7 B 234 LYS LEU HIS GLY THR ILE GLU HIS ASP ALA SER LEU SER SEQRES 8 B 234 ARG GLU ASP VAL ALA ILE GLY ASP ASN LEU HIS PHE ASN SEQRES 9 B 234 GLU ALA ILE PHE THR THR LEU ALA ASN SER ASN PRO GLY SEQRES 10 B 234 ALA ASP VAL TYR ASN ILE SER SER ALA ALA GLN VAL GLN SEQRES 11 B 234 HIS ASP ARG LEU ALA ASP SER LEU ALA ARG ASN PRO ASN SEQRES 12 B 234 VAL THR ASN THR ASP LEU THR ALA THR ILE ARG SER SER SEQRES 13 B 234 GLU SER ALA PHE PHE LEU THR VAL MET SER ALA GLY ASP SEQRES 14 B 234 PRO LEU ARG GLY GLU ALA PRO LYS LYS PHE VAL ASN VAL SEQRES 15 B 234 PHE PHE ARG GLU GLU ARG MET PRO ILE LYS GLU GLY TRP SEQRES 16 B 234 LYS ARG SER THR THR PRO ILE THR ILE PRO LEU LEU GLY SEQRES 17 B 234 PRO ILE ILE GLU ARG ILE THR GLU LEU SER ASP TRP LYS SEQRES 18 B 234 PRO THR GLY ASP ASN CYS GLY ALA ILE VAL LEU SER PRO MODRES 5FUK ASN A 122 ASN GLYCOSYLATION SITE MODRES 5FUK ASN A 143 ASN GLYCOSYLATION SITE MODRES 5FUK ASN B 35 ASN GLYCOSYLATION SITE MODRES 5FUK ASN B 122 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET HEM A1235 43 HET SNP A1236 19 HET PLM A1237 18 HET RNP A1238 19 HET MG A1239 1 HET NAG A1245 14 HET HEM B1235 43 HET SNP B1236 19 HET PLM B1237 18 HET RNP B1238 19 HET MG B1239 1 HET NAG B1240 14 HET PO4 B1247 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SNP 1-(ISOPROPYLAMINO)-3-(1-NAPHTHYLOXY)-2-PROPANOL HETNAM PLM PALMITIC ACID HETNAM RNP (1E,2R)-1-(ISOPROPYLIMINO)-3-(1-NAPHTHYLOXY)PROPAN-2-OL HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN SNP S-PROPRANOLOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 5 HEM 2(C34 H32 FE N4 O4) FORMUL 6 SNP 2(C16 H21 N O2) FORMUL 7 PLM 2(C16 H32 O2) FORMUL 8 RNP 2(C16 H19 N O2) FORMUL 9 MG 2(MG 2+) FORMUL 17 PO4 O4 P 3- FORMUL 18 HOH *643(H2 O) HELIX 1 1 CYS A 17 HIS A 26 1 10 HELIX 2 2 SER A 37 ASN A 50 1 14 HELIX 3 3 GLN A 52 LEU A 65 1 14 HELIX 4 4 SER A 74 LEU A 80 5 7 HELIX 5 5 ASN A 104 ASN A 113 1 10 HELIX 6 6 ILE A 123 ASN A 141 1 19 HELIX 7 7 THR A 147 MET A 165 1 19 HELIX 8 8 ASP A 169 ARG A 172 5 4 HELIX 9 9 LYS A 177 GLU A 187 1 11 HELIX 10 10 THR A 203 SER A 218 1 16 HELIX 11 11 CYS B 17 HIS B 26 1 10 HELIX 12 12 SER B 37 ASN B 50 1 14 HELIX 13 13 GLN B 52 LEU B 65 1 14 HELIX 14 14 SER B 74 LEU B 80 5 7 HELIX 15 15 ASN B 104 ASN B 113 1 10 HELIX 16 16 ILE B 123 ASN B 141 1 19 HELIX 17 17 THR B 147 MET B 165 1 19 HELIX 18 18 ASP B 169 ARG B 172 5 4 HELIX 19 19 LYS B 177 GLU B 187 1 11 HELIX 20 20 THR B 203 SER B 218 1 16 SHEET 1 AA 2 VAL A 120 ASN A 122 0 SHEET 2 AA 2 GLU A 174 PRO A 176 -1 O ALA A 175 N TYR A 121 SHEET 1 BA 2 VAL B 120 ASN B 122 0 SHEET 2 BA 2 GLU B 174 PRO B 176 -1 O ALA B 175 N TYR B 121 SSBOND 1 CYS A 227 CYS B 227 1555 1555 2.15 LINK ND2 ASN A 122 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 143 C1 NAG A1245 1555 1555 1.46 LINK ND2 ASN B 35 C1 NAG B1240 1555 1555 1.45 LINK ND2 ASN B 122 C1 NAG D 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.48 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.42 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.46 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.42 LINK O6 MAN D 4 C1 MAN D 5 1555 1555 1.45 LINK SG CYS A 17 FE HEM A1235 1555 1555 2.36 LINK OE2 GLU A 85 MG MG A1239 1555 1555 2.13 LINK O HIS A 86 MG MG A1239 1555 1555 2.17 LINK OG SER A 89 MG MG A1239 1555 1555 2.10 LINK O1D HEM A1235 MG MG A1239 1555 1555 2.13 LINK MG MG A1239 O HOH A2163 1555 1555 2.12 LINK MG MG A1239 O HOH A2164 1555 1555 2.09 LINK SG CYS B 17 FE HEM B1235 1555 1555 2.34 LINK OE2 GLU B 85 MG MG B1239 1555 1555 2.09 LINK O HIS B 86 MG MG B1239 1555 1555 2.14 LINK OG SER B 89 MG MG B1239 1555 1555 2.13 LINK O1D HEM B1235 MG MG B1239 1555 1555 2.16 LINK MG MG B1239 O HOH B2137 1555 1555 2.10 LINK MG MG B1239 O HOH B2138 1555 1555 2.10 CRYST1 60.010 76.670 120.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008278 0.00000