HEADER TRANSFERASE 27-JAN-16 5FUL TITLE CRYSTAL STRUCTURE OF MUS MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE 2 TITLE 2 WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 2; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.125; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PDEST20 KEYWDS TRANSFERASE, S-ADENOSYL-L-METHIONINE, S-ADENOSYL-L-HOMOCYSTEINE EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,N.TROFFER-CHARLIER,N.MARECHAL,L.BONNEFOND,J.CAVARELLI REVDAT 5 10-JAN-24 5FUL 1 REMARK LINK REVDAT 4 24-APR-19 5FUL 1 SOURCE REVDAT 3 01-MAR-17 5FUL 1 JRNL REVDAT 2 07-DEC-16 5FUL 1 JRNL REVDAT 1 09-NOV-16 5FUL 0 JRNL AUTH V.CURA,N.MARECHAL,N.TROFFER-CHARLIER,J.M.STRUB, JRNL AUTH 2 M.J.VAN HAREN,N.I.MARTIN,S.CIANFERANI,L.BONNEFOND, JRNL AUTH 3 J.CAVARELLI JRNL TITL STRUCTURAL STUDIES OF PROTEIN ARGININE METHYLTRANSFERASE 2 JRNL TITL 2 REVEAL ITS INTERACTIONS WITH POTENTIAL SUBSTRATES AND JRNL TITL 3 INHIBITORS. JRNL REF FEBS J. V. 284 77 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 27879050 JRNL DOI 10.1111/FEBS.13953 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2708 - 4.6630 1.00 2724 150 0.1548 0.1931 REMARK 3 2 4.6630 - 3.7018 1.00 2617 130 0.1339 0.1375 REMARK 3 3 3.7018 - 3.2340 1.00 2593 151 0.1524 0.1896 REMARK 3 4 3.2340 - 2.9384 1.00 2597 133 0.1668 0.1838 REMARK 3 5 2.9384 - 2.7278 1.00 2551 132 0.1689 0.1989 REMARK 3 6 2.7278 - 2.5670 1.00 2571 133 0.1698 0.2044 REMARK 3 7 2.5670 - 2.4385 1.00 2580 123 0.1615 0.1889 REMARK 3 8 2.4385 - 2.3323 1.00 2554 132 0.1645 0.2210 REMARK 3 9 2.3323 - 2.2425 1.00 2551 152 0.1732 0.1968 REMARK 3 10 2.2425 - 2.1652 1.00 2547 127 0.1878 0.2224 REMARK 3 11 2.1652 - 2.0975 1.00 2534 138 0.2116 0.2380 REMARK 3 12 2.0975 - 2.0375 1.00 2544 130 0.2185 0.2463 REMARK 3 13 2.0375 - 1.9839 1.00 2537 142 0.2351 0.2875 REMARK 3 14 1.9839 - 1.9355 1.00 2536 121 0.2553 0.2660 REMARK 3 15 1.9355 - 1.8915 0.97 2462 136 0.2955 0.2964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2856 REMARK 3 ANGLE : 1.289 3868 REMARK 3 CHIRALITY : 0.088 434 REMARK 3 PLANARITY : 0.009 483 REMARK 3 DIHEDRAL : 12.015 1662 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2570 13.2895 -23.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.2395 REMARK 3 T33: 0.2435 T12: -0.0062 REMARK 3 T13: 0.0166 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.8716 L22: 2.0152 REMARK 3 L33: 1.5808 L12: -0.3545 REMARK 3 L13: 0.5748 L23: -0.1581 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.1083 S13: 0.1478 REMARK 3 S21: 0.0414 S22: -0.0092 S23: -0.0746 REMARK 3 S31: -0.1600 S32: 0.1810 S33: 0.0717 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3087 -15.8957 -2.2169 REMARK 3 T TENSOR REMARK 3 T11: 0.3364 T22: 0.2748 REMARK 3 T33: 0.3502 T12: 0.0279 REMARK 3 T13: 0.0311 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 0.6734 L22: 0.3652 REMARK 3 L33: 4.2463 L12: 0.0580 REMARK 3 L13: -0.9639 L23: -1.1072 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0672 S13: 0.0460 REMARK 3 S21: -0.0154 S22: -0.0575 S23: -0.1728 REMARK 3 S31: 0.2288 S32: 0.1409 S33: 0.0970 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2912 -10.5526 -21.3996 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.3206 REMARK 3 T33: 0.2662 T12: 0.0726 REMARK 3 T13: 0.0523 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.5625 L22: 2.2735 REMARK 3 L33: 0.4633 L12: -0.3970 REMARK 3 L13: 0.4677 L23: -0.6466 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: 0.1741 S13: -0.0590 REMARK 3 S21: -0.2582 S22: -0.1584 S23: -0.1962 REMARK 3 S31: 0.2270 S32: 0.1876 S33: 0.0856 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 427 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5892 -23.6902 -15.1284 REMARK 3 T TENSOR REMARK 3 T11: 0.3266 T22: 0.2622 REMARK 3 T33: 0.3354 T12: 0.0182 REMARK 3 T13: 0.0379 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 6.8083 L22: 3.1383 REMARK 3 L33: 2.4263 L12: -4.5615 REMARK 3 L13: -0.8710 L23: 0.7480 REMARK 3 S TENSOR REMARK 3 S11: -0.1626 S12: 0.0563 S13: -0.6285 REMARK 3 S21: 0.3870 S22: -0.0463 S23: 0.5783 REMARK 3 S31: 0.2517 S32: 0.0577 S33: 0.3562 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1-106 ARE DISORDERED. REMARK 4 REMARK 4 5FUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290066076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5FUB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG6000, 100MM CACL2, 100MM HEPES REMARK 280 PH7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.48150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.48150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.75350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.70700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.75350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.70700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.48150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.75350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.70700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.48150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.75350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.70700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2116 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 CYS A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 VAL A 14 REMARK 465 ILE A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ASP A 21 REMARK 465 PRO A 22 REMARK 465 VAL A 23 REMARK 465 ASP A 24 REMARK 465 TYR A 25 REMARK 465 GLY A 26 REMARK 465 CYS A 27 REMARK 465 GLU A 28 REMARK 465 MET A 29 REMARK 465 GLN A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 GLN A 33 REMARK 465 ASP A 34 REMARK 465 GLY A 35 REMARK 465 ALA A 36 REMARK 465 GLN A 37 REMARK 465 LEU A 38 REMARK 465 GLN A 39 REMARK 465 LEU A 40 REMARK 465 GLN A 41 REMARK 465 LEU A 42 REMARK 465 GLN A 43 REMARK 465 PRO A 44 REMARK 465 GLU A 45 REMARK 465 GLU A 46 REMARK 465 PHE A 47 REMARK 465 VAL A 48 REMARK 465 ALA A 49 REMARK 465 ILE A 50 REMARK 465 ALA A 51 REMARK 465 ASP A 52 REMARK 465 TYR A 53 REMARK 465 THR A 54 REMARK 465 ALA A 55 REMARK 465 THR A 56 REMARK 465 ASP A 57 REMARK 465 GLU A 58 REMARK 465 THR A 59 REMARK 465 GLN A 60 REMARK 465 LEU A 61 REMARK 465 SER A 62 REMARK 465 PHE A 63 REMARK 465 LEU A 64 REMARK 465 ARG A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 465 LYS A 68 REMARK 465 ILE A 69 REMARK 465 LEU A 70 REMARK 465 ILE A 71 REMARK 465 LEU A 72 REMARK 465 ARG A 73 REMARK 465 GLN A 74 REMARK 465 THR A 75 REMARK 465 THR A 76 REMARK 465 ALA A 77 REMARK 465 ASP A 78 REMARK 465 TRP A 79 REMARK 465 TRP A 80 REMARK 465 TRP A 81 REMARK 465 GLY A 82 REMARK 465 GLU A 83 REMARK 465 ARG A 84 REMARK 465 ALA A 85 REMARK 465 GLY A 86 REMARK 465 CYS A 87 REMARK 465 CYS A 88 REMARK 465 GLY A 89 REMARK 465 TYR A 90 REMARK 465 ILE A 91 REMARK 465 PRO A 92 REMARK 465 ALA A 93 REMARK 465 ASN A 94 REMARK 465 HIS A 95 REMARK 465 LEU A 96 REMARK 465 GLY A 97 REMARK 465 LYS A 98 REMARK 465 GLN A 99 REMARK 465 LEU A 100 REMARK 465 GLU A 101 REMARK 465 GLU A 102 REMARK 465 TYR A 103 REMARK 465 ASP A 104 REMARK 465 PRO A 105 REMARK 465 GLU A 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 228 CB CYS A 228 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 229 -58.62 69.75 REMARK 500 GLU A 232 -27.15 88.77 REMARK 500 ALA A 266 52.95 -152.30 REMARK 500 VAL A 274 -63.18 -124.87 REMARK 500 ASN A 279 76.31 -152.39 REMARK 500 ASN A 303 40.23 -107.16 REMARK 500 LYS A 383 -137.46 43.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2072 DISTANCE = 6.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1447 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 196 O REMARK 620 2 ASP A 199 OD2 123.9 REMARK 620 3 ASP A 199 OD1 79.9 48.8 REMARK 620 4 HOH A2085 O 81.9 153.8 155.2 REMARK 620 5 HOH A2090 O 110.6 85.8 81.5 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1448 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 225 O REMARK 620 2 HOH A2015 O 99.1 REMARK 620 3 HOH A2016 O 171.7 85.0 REMARK 620 4 HOH A2023 O 100.2 137.5 72.2 REMARK 620 5 HOH A2126 O 80.8 144.3 100.1 76.4 REMARK 620 6 HOH A2128 O 88.4 73.5 99.7 144.2 70.7 REMARK 620 7 HOH A2132 O 91.0 70.9 83.5 71.3 144.6 143.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1452 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FUB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF A METHYL TRANSFERASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 G0 COMES FROM THE TEV CLEAVAGE SITE. MUTATION R445W DBREF 5FUL A 1 444 UNP Q3UKX1 Q3UKX1_MOUSE 1 444 SEQADV 5FUL GLY A 0 UNP Q3UKX1 EXPRESSION TAG SEQADV 5FUL TRP A 445 UNP Q3UKX1 ARG 445 ENGINEERED MUTATION SEQRES 1 A 446 GLY MET GLU ALA PRO GLY GLU GLY PRO CYS SER GLU SER SEQRES 2 A 446 GLN VAL ILE PRO VAL LEU GLU GLU ASP PRO VAL ASP TYR SEQRES 3 A 446 GLY CYS GLU MET GLN LEU LEU GLN ASP GLY ALA GLN LEU SEQRES 4 A 446 GLN LEU GLN LEU GLN PRO GLU GLU PHE VAL ALA ILE ALA SEQRES 5 A 446 ASP TYR THR ALA THR ASP GLU THR GLN LEU SER PHE LEU SEQRES 6 A 446 ARG GLY GLU LYS ILE LEU ILE LEU ARG GLN THR THR ALA SEQRES 7 A 446 ASP TRP TRP TRP GLY GLU ARG ALA GLY CYS CYS GLY TYR SEQRES 8 A 446 ILE PRO ALA ASN HIS LEU GLY LYS GLN LEU GLU GLU TYR SEQRES 9 A 446 ASP PRO GLU ASP THR TRP GLN ASP GLU GLU TYR PHE ASP SEQRES 10 A 446 SER TYR GLY THR LEU LYS LEU HIS LEU GLU MET LEU ALA SEQRES 11 A 446 ASP GLN PRO ARG THR THR LYS TYR HIS SER VAL ILE LEU SEQRES 12 A 446 GLN ASN LYS GLU SER LEU LYS ASP LYS VAL ILE LEU ASP SEQRES 13 A 446 VAL GLY CYS GLY THR GLY ILE ILE SER LEU PHE CYS ALA SEQRES 14 A 446 HIS HIS ALA ARG PRO LYS ALA VAL TYR ALA VAL GLU ALA SEQRES 15 A 446 SER ASP MET ALA GLN HIS THR SER GLN LEU VAL LEU GLN SEQRES 16 A 446 ASN GLY PHE ALA ASP THR ILE THR VAL PHE GLN GLN LYS SEQRES 17 A 446 VAL GLU ASP VAL VAL LEU PRO GLU LYS VAL ASP VAL LEU SEQRES 18 A 446 VAL SER GLU TRP MET GLY THR CYS LEU LEU PHE GLU PHE SEQRES 19 A 446 MET ILE GLU SER ILE LEU TYR ALA ARG ASP THR TRP LEU SEQRES 20 A 446 LYS GLY ASP GLY ILE ILE TRP PRO THR THR ALA ALA LEU SEQRES 21 A 446 HIS LEU VAL PRO CYS SER ALA GLU LYS ASP TYR HIS SER SEQRES 22 A 446 LYS VAL LEU PHE TRP ASP ASN ALA TYR GLU PHE ASN LEU SEQRES 23 A 446 SER ALA LEU LYS SER LEU ALA ILE LYS GLU PHE PHE SER SEQRES 24 A 446 ARG PRO LYS SER ASN HIS ILE LEU LYS PRO GLU ASP CYS SEQRES 25 A 446 LEU SER GLU PRO CYS THR ILE LEU GLN LEU ASP MET ARG SEQRES 26 A 446 THR VAL GLN VAL PRO ASP LEU GLU THR MET ARG GLY GLU SEQRES 27 A 446 LEU ARG PHE ASP ILE GLN LYS ALA GLY THR LEU HIS GLY SEQRES 28 A 446 PHE THR ALA TRP PHE SER VAL TYR PHE GLN SER LEU GLU SEQRES 29 A 446 GLU GLY GLN PRO GLN GLN VAL LEU SER THR GLY PRO LEU SEQRES 30 A 446 HIS PRO THR THR HIS TRP LYS GLN THR LEU PHE MET MET SEQRES 31 A 446 ASP ASP PRO VAL PRO VAL HIS THR GLY ASP VAL VAL THR SEQRES 32 A 446 GLY SER VAL VAL LEU GLN ARG ASN PRO VAL TRP ARG ARG SEQRES 33 A 446 HIS MET SER VAL SER LEU SER TRP VAL VAL THR SER ALA SEQRES 34 A 446 LEU ASP PRO THR SER GLN ARG VAL GLY GLU LYS VAL PHE SEQRES 35 A 446 PRO ILE TRP TRP HET SAH A1446 26 HET CA A1447 1 HET CA A1448 1 HET PG4 A1449 13 HET CL A1450 1 HET EDO A1451 4 HET EDO A1452 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CA CALCIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 CA 2(CA 2+) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 CL CL 1- FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *309(H2 O) HELIX 1 1 GLN A 110 THR A 120 1 11 HELIX 2 2 LEU A 121 ALA A 129 1 9 HELIX 3 3 ASP A 130 ASN A 144 1 15 HELIX 4 4 LYS A 145 LYS A 149 5 5 HELIX 5 5 GLY A 161 ALA A 171 1 11 HELIX 6 6 ASP A 183 ASN A 195 1 13 HELIX 7 7 MET A 234 TRP A 245 1 12 HELIX 8 8 ALA A 266 VAL A 274 1 9 HELIX 9 9 LEU A 275 ASN A 279 5 5 HELIX 10 10 LEU A 285 ALA A 287 5 3 HELIX 11 11 LEU A 288 SER A 298 1 11 HELIX 12 12 LYS A 307 ASP A 310 5 4 HELIX 13 13 GLN A 327 LEU A 331 5 5 SHEET 1 AA 5 ILE A 201 PHE A 204 0 SHEET 2 AA 5 ALA A 175 VAL A 179 1 O VAL A 176 N THR A 202 SHEET 3 AA 5 VAL A 152 VAL A 156 1 O ILE A 153 N TYR A 177 SHEET 4 AA 5 VAL A 217 VAL A 221 1 N ASP A 218 O VAL A 152 SHEET 5 AA 5 LEU A 246 TRP A 253 1 N LYS A 247 O VAL A 217 SHEET 1 AB 4 LYS A 301 HIS A 304 0 SHEET 2 AB 4 GLN A 384 VAL A 395 -1 O GLN A 384 N HIS A 304 SHEET 3 AB 4 GLY A 346 PHE A 359 -1 O GLY A 346 N VAL A 395 SHEET 4 AB 4 GLN A 369 SER A 372 -1 O GLN A 369 N PHE A 359 SHEET 1 AC 5 LYS A 301 HIS A 304 0 SHEET 2 AC 5 GLN A 384 VAL A 395 -1 O GLN A 384 N HIS A 304 SHEET 3 AC 5 GLY A 346 PHE A 359 -1 O GLY A 346 N VAL A 395 SHEET 4 AC 5 THR A 256 CYS A 264 -1 O THR A 256 N TYR A 358 SHEET 5 AC 5 CYS A 316 ASP A 322 -1 O CYS A 316 N LEU A 261 SHEET 1 AD 2 GLN A 369 SER A 372 0 SHEET 2 AD 2 GLY A 346 PHE A 359 -1 O VAL A 357 N LEU A 371 SHEET 1 AE 4 THR A 333 ASP A 341 0 SHEET 2 AE 4 VAL A 400 ARG A 409 -1 O VAL A 401 N PHE A 340 SHEET 3 AE 4 MET A 417 THR A 426 -1 O SER A 418 N GLN A 408 SHEET 4 AE 4 GLN A 434 ILE A 443 -1 O ARG A 435 N VAL A 425 LINK O GLY A 196 CA CA A1447 1555 1555 2.50 LINK OD2 ASP A 199 CA CA A1447 1555 1555 2.66 LINK OD1 ASP A 199 CA CA A1447 1555 1555 2.63 LINK O MET A 225 CA CA A1448 1555 1555 2.41 LINK CA CA A1447 O HOH A2085 1555 1555 2.45 LINK CA CA A1447 O HOH A2090 1555 1555 2.33 LINK CA CA A1448 O HOH A2015 1555 1555 2.51 LINK CA CA A1448 O HOH A2016 1555 1555 2.51 LINK CA CA A1448 O HOH A2023 1555 1555 2.31 LINK CA CA A1448 O HOH A2126 1555 1555 2.32 LINK CA CA A1448 O HOH A2128 1555 1555 2.36 LINK CA CA A1448 O HOH A2132 1555 1555 2.50 CISPEP 1 TRP A 253 PRO A 254 0 -6.35 CISPEP 2 ILE A 443 TRP A 444 0 2.65 SITE 1 AC1 22 TYR A 114 PHE A 115 TYR A 118 HIS A 124 SITE 2 AC1 22 MET A 127 ARG A 133 GLY A 157 CYS A 158 SITE 3 AC1 22 ILE A 162 GLU A 180 ALA A 181 GLN A 206 SITE 4 AC1 22 LYS A 207 VAL A 208 GLU A 209 GLU A 223 SITE 5 AC1 22 MET A 234 SER A 237 HOH A2021 HOH A2050 SITE 6 AC1 22 HOH A2051 HOH A2142 SITE 1 AC2 4 GLY A 196 ASP A 199 HOH A2085 HOH A2090 SITE 1 AC3 7 MET A 225 HOH A2015 HOH A2016 HOH A2023 SITE 2 AC3 7 HOH A2126 HOH A2128 HOH A2132 SITE 1 AC4 6 LYS A 151 ASP A 218 ASP A 249 LEU A 362 SITE 2 AC4 6 GLU A 363 HOH A2039 SITE 1 AC5 4 GLY A 374 PRO A 375 LEU A 376 HIS A 377 SITE 1 AC6 4 GLN A 110 HIS A 416 TRP A 445 HOH A2004 SITE 1 AC7 1 ARG A 299 CRYST1 65.507 115.414 132.963 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015266 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007521 0.00000