HEADER HYDROLASE 09-FEB-16 5FVK TITLE CRYSTAL STRUCTURE OF VPS4-VFA1 COMPLEX FROM S.CEREVISIAE AT 1.66 A TITLE 2 RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MIT DOMAIN, RESIDUES 1-82; COMPND 5 SYNONYM: DOA4-INDEPENDENT DEGRADATION PROTEIN 6, PROTEIN END13, COMPND 6 VACUOLAR PROTEIN-TARGETING PROTEIN 10, VPS4; COMPND 7 EC: 3.6.4.6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: VPS4-ASSOCIATED PROTEIN 1; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: RESIDUES 182-203; COMPND 13 SYNONYM: VFA1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: POPTH; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: POPTG KEYWDS HYDROLASE, VPS4, VFA1, MIT DOMAIN, YEAST, ATPASE EXPDTA X-RAY DIFFRACTION AUTHOR R.KOJIMA,T.OBITA,K.ONOUE,M.MIZUGUCHI REVDAT 4 10-JAN-24 5FVK 1 REMARK REVDAT 3 23-AUG-17 5FVK 1 REMARK REVDAT 2 08-JUN-16 5FVK 1 JRNL REVDAT 1 27-APR-16 5FVK 0 JRNL AUTH R.KOJIMA,T.OBITA,K.ONOUE,M.MIZUGUCHI JRNL TITL STRUCTURAL FINE-TUNING OF MIT INTERACTING MOTIF 2 (MIM2) AND JRNL TITL 2 ALLOSTERIC REGULATION OF ESCRT-III BY VPS4 IN YEAST. JRNL REF J.MOL.BIOL. V. 428 2392 2016 JRNL REFN ISSN 0022-2836 JRNL PMID 27075672 JRNL DOI 10.1016/J.JMB.2016.04.007 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9999 - 3.3150 0.99 2820 143 0.1655 0.1913 REMARK 3 2 3.3150 - 2.6316 1.00 2713 156 0.1887 0.2239 REMARK 3 3 2.6316 - 2.2990 1.00 2694 134 0.1914 0.2561 REMARK 3 4 2.2990 - 2.0889 1.00 2651 150 0.1805 0.2208 REMARK 3 5 2.0889 - 1.9392 1.00 2646 152 0.1900 0.2384 REMARK 3 6 1.9392 - 1.8249 1.00 2656 142 0.1999 0.2611 REMARK 3 7 1.8249 - 1.7335 1.00 2642 152 0.2086 0.2407 REMARK 3 8 1.7335 - 1.6580 1.00 2625 128 0.2264 0.2697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1712 REMARK 3 ANGLE : 0.938 2315 REMARK 3 CHIRALITY : 0.041 255 REMARK 3 PLANARITY : 0.004 298 REMARK 3 DIHEDRAL : 15.209 659 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2800 32.7513 13.3073 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1457 REMARK 3 T33: 0.1376 T12: 0.0275 REMARK 3 T13: -0.0595 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 3.4765 L22: 2.4926 REMARK 3 L33: 2.3376 L12: -1.1191 REMARK 3 L13: 1.5258 L23: -0.2229 REMARK 3 S TENSOR REMARK 3 S11: -0.3636 S12: -0.4887 S13: 0.4785 REMARK 3 S21: 0.3932 S22: 0.2501 S23: -0.3494 REMARK 3 S31: -0.1783 S32: -0.1246 S33: 0.0551 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2021 24.3575 6.2597 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0938 REMARK 3 T33: 0.0740 T12: -0.0121 REMARK 3 T13: 0.0047 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 6.4451 L22: 6.4822 REMARK 3 L33: 1.8185 L12: -4.6569 REMARK 3 L13: 1.8188 L23: -2.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.1291 S12: 0.3570 S13: -0.0309 REMARK 3 S21: -0.1054 S22: -0.1816 S23: -0.3324 REMARK 3 S31: -0.0194 S32: 0.1378 S33: 0.0225 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 183 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3922 41.8586 7.0684 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.2498 REMARK 3 T33: 0.4965 T12: 0.1335 REMARK 3 T13: -0.0455 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.8311 L22: 4.1687 REMARK 3 L33: 3.4269 L12: 3.5739 REMARK 3 L13: -0.0445 L23: -1.6869 REMARK 3 S TENSOR REMARK 3 S11: -0.2659 S12: -0.3035 S13: 1.3156 REMARK 3 S21: 0.4450 S22: -0.1796 S23: 0.1889 REMARK 3 S31: -0.4912 S32: -0.0705 S33: 0.3514 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 189 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0587 46.1561 2.0787 REMARK 3 T TENSOR REMARK 3 T11: 0.6634 T22: 0.2148 REMARK 3 T33: 0.5106 T12: -0.0737 REMARK 3 T13: -0.1519 T23: 0.0903 REMARK 3 L TENSOR REMARK 3 L11: 4.8597 L22: 1.5307 REMARK 3 L33: 2.3797 L12: -0.0272 REMARK 3 L13: 0.5489 L23: 1.8743 REMARK 3 S TENSOR REMARK 3 S11: -0.3640 S12: 0.3284 S13: 1.6002 REMARK 3 S21: -0.0672 S22: 0.6070 S23: -0.4322 REMARK 3 S31: -1.5205 S32: -0.1279 S33: -0.2012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 196 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8126 36.4006 4.7771 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.1740 REMARK 3 T33: 0.3988 T12: -0.0321 REMARK 3 T13: 0.0363 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.9926 L22: 5.9431 REMARK 3 L33: 5.0363 L12: -0.3478 REMARK 3 L13: 2.3800 L23: -0.7996 REMARK 3 S TENSOR REMARK 3 S11: -0.1615 S12: 0.0115 S13: 0.1239 REMARK 3 S21: -0.4155 S22: -0.1790 S23: -0.4644 REMARK 3 S31: -0.2682 S32: 0.4539 S33: 0.3028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2211 33.9686 -24.5377 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.3137 REMARK 3 T33: 0.4836 T12: -0.0309 REMARK 3 T13: 0.0623 T23: -0.1055 REMARK 3 L TENSOR REMARK 3 L11: 5.4820 L22: 4.5897 REMARK 3 L33: 8.7309 L12: -4.1310 REMARK 3 L13: 0.9233 L23: -4.2572 REMARK 3 S TENSOR REMARK 3 S11: 0.4135 S12: 0.1182 S13: 1.2237 REMARK 3 S21: 0.3173 S22: -0.5082 S23: 0.7405 REMARK 3 S31: -0.5616 S32: -0.0490 S33: 0.2354 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6269 27.4264 -12.3642 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.1952 REMARK 3 T33: 0.1570 T12: 0.0340 REMARK 3 T13: -0.0115 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 7.3219 L22: 3.8114 REMARK 3 L33: 4.0240 L12: 2.9388 REMARK 3 L13: -3.4138 L23: -1.7523 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.3615 S13: 0.5576 REMARK 3 S21: -0.0123 S22: 0.3317 S23: 0.7416 REMARK 3 S31: -0.4399 S32: -0.4536 S33: -0.1392 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5718 22.6982 -14.9758 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.1573 REMARK 3 T33: 0.0556 T12: 0.0008 REMARK 3 T13: -0.0021 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.4732 L22: 3.4969 REMARK 3 L33: 2.4982 L12: 0.8316 REMARK 3 L13: -0.7843 L23: -0.9555 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.3785 S13: -0.2555 REMARK 3 S21: -0.1796 S22: 0.1031 S23: -0.0153 REMARK 3 S31: 0.0501 S32: 0.0257 S33: -0.0369 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5659 17.2245 -6.2973 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.0934 REMARK 3 T33: 0.0665 T12: 0.0250 REMARK 3 T13: 0.0109 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 7.4146 L22: 7.3964 REMARK 3 L33: 1.5939 L12: 5.8757 REMARK 3 L13: -1.0881 L23: -0.6441 REMARK 3 S TENSOR REMARK 3 S11: 0.2559 S12: -0.2172 S13: -0.1119 REMARK 3 S21: 0.3987 S22: -0.2083 S23: 0.1240 REMARK 3 S31: 0.0520 S32: -0.0096 S33: 0.0080 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 184 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6511 34.3035 -15.5901 REMARK 3 T TENSOR REMARK 3 T11: 0.2751 T22: 0.3503 REMARK 3 T33: 0.4206 T12: -0.1376 REMARK 3 T13: 0.1053 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 4.3194 L22: 9.4102 REMARK 3 L33: 6.7888 L12: -4.9184 REMARK 3 L13: -4.5906 L23: 7.8554 REMARK 3 S TENSOR REMARK 3 S11: 0.1552 S12: 0.5623 S13: 0.7351 REMARK 3 S21: -0.1808 S22: 0.0175 S23: -0.3362 REMARK 3 S31: -0.6559 S32: 0.1809 S33: -0.1413 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 189 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3306 39.3873 -8.0504 REMARK 3 T TENSOR REMARK 3 T11: 0.3986 T22: 0.1636 REMARK 3 T33: 0.4703 T12: -0.2787 REMARK 3 T13: 0.1875 T23: -0.2282 REMARK 3 L TENSOR REMARK 3 L11: 7.3881 L22: 2.0148 REMARK 3 L33: 1.6640 L12: 2.0665 REMARK 3 L13: 0.2491 L23: 1.2130 REMARK 3 S TENSOR REMARK 3 S11: 0.4523 S12: -0.3301 S13: 1.0632 REMARK 3 S21: -0.1537 S22: 0.1037 S23: -0.4356 REMARK 3 S31: -0.3023 S32: 0.1183 S33: -0.0889 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 196 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8602 30.7811 -6.0117 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.1384 REMARK 3 T33: 0.1801 T12: -0.0222 REMARK 3 T13: 0.0769 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 5.7517 L22: 8.0768 REMARK 3 L33: 5.1758 L12: 2.8373 REMARK 3 L13: -2.0311 L23: -2.7804 REMARK 3 S TENSOR REMARK 3 S11: 0.1685 S12: -0.1799 S13: 0.0853 REMARK 3 S21: 0.2303 S22: -0.0859 S23: 0.0316 REMARK 3 S31: -0.4343 S32: 0.1503 S33: 0.0040 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1290066195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 31.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V6X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 182 REMARK 465 GLU D 182 REMARK 465 ASN D 183 REMARK 465 LYS D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FVL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VPS4-VPS20 COMPLEX FROM S. CEREVISIAE DBREF 5FVK A 1 82 UNP P52917 VPS4_YEAST 1 82 DBREF 5FVK B 1 82 UNP P52917 VPS4_YEAST 1 82 DBREF 5FVK C 182 203 UNP P40080 VFA1_YEAST 182 203 DBREF 5FVK D 182 203 UNP P40080 VFA1_YEAST 182 203 SEQRES 1 A 82 MET SER THR GLY ASP PHE LEU THR LYS GLY ILE GLU LEU SEQRES 2 A 82 VAL GLN LYS ALA ILE ASP LEU ASP THR ALA THR GLN TYR SEQRES 3 A 82 GLU GLU ALA TYR THR ALA TYR TYR ASN GLY LEU ASP TYR SEQRES 4 A 82 LEU MET LEU ALA LEU LYS TYR GLU LYS ASN PRO LYS SER SEQRES 5 A 82 LYS ASP LEU ILE ARG ALA LYS PHE THR GLU TYR LEU ASN SEQRES 6 A 82 ARG ALA GLU GLN LEU LYS LYS HIS LEU GLU SER GLU GLU SEQRES 7 A 82 ALA ASN ALA ALA SEQRES 1 B 82 MET SER THR GLY ASP PHE LEU THR LYS GLY ILE GLU LEU SEQRES 2 B 82 VAL GLN LYS ALA ILE ASP LEU ASP THR ALA THR GLN TYR SEQRES 3 B 82 GLU GLU ALA TYR THR ALA TYR TYR ASN GLY LEU ASP TYR SEQRES 4 B 82 LEU MET LEU ALA LEU LYS TYR GLU LYS ASN PRO LYS SER SEQRES 5 B 82 LYS ASP LEU ILE ARG ALA LYS PHE THR GLU TYR LEU ASN SEQRES 6 B 82 ARG ALA GLU GLN LEU LYS LYS HIS LEU GLU SER GLU GLU SEQRES 7 B 82 ALA ASN ALA ALA SEQRES 1 C 22 GLU ASN TYR SER ASN THR ASP PRO GLU GLU LEU LEU ARG SEQRES 2 C 22 LYS HIS VAL PHE PRO SER VAL PRO LYS SEQRES 1 D 22 GLU ASN TYR SER ASN THR ASP PRO GLU GLU LEU LEU ARG SEQRES 2 D 22 LYS HIS VAL PHE PRO SER VAL PRO LYS FORMUL 5 HOH *107(H2 O) HELIX 1 1 SER A 2 ALA A 23 1 22 HELIX 2 2 GLN A 25 GLU A 47 1 23 HELIX 3 3 ASN A 49 ALA A 82 1 34 HELIX 4 4 ASP B 5 ALA B 23 1 19 HELIX 5 5 GLN B 25 GLU B 47 1 23 HELIX 6 6 ASN B 49 ALA B 82 1 34 HELIX 7 7 ASP C 188 HIS C 196 1 9 HELIX 8 8 ASP D 188 HIS D 196 1 9 CRYST1 38.830 56.460 84.250 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011869 0.00000