HEADER HYDROLASE 17-FEB-16 5FWI TITLE STRUCTURE OF USP7 CATALYTIC DOMAIN AND THREE UBL-DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: RESIDUES 207-882; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 7, HERPESVIRUS-ASSOCIATED UBIQUITIN COMPND 6 -SPECIFIC PROTEASE, UBIQUITIN THIOESTERASE 7, UBIQUITIN-SPECIFIC-P COMPND 7 ROCESSING PROTEASE 7, USP7; COMPND 8 EC: 3.4.19.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX6P-1 KEYWDS HYDROLASE, DEUBIQUITINASE, USP, UBIQUITIN-LIKE EXPDTA X-RAY DIFFRACTION AUTHOR R.Q.KIM,W.J.VAN DIJK,T.K.SIXMA REVDAT 3 10-JAN-24 5FWI 1 REMARK REVDAT 2 29-JUN-16 5FWI 1 TITLE AUTHOR REVDAT 1 22-JUN-16 5FWI 0 JRNL AUTH R.Q.KIM,W.J.VAN DIJK,T.K.SIXMA JRNL TITL STRUCTURE OF USP7 CATALYTIC DOMAIN AND THREE UBL-DOMAINS JRNL TITL 2 REVEALS A CONNECTOR ALPHA-HELIX WITH REGULATORY ROLE. JRNL REF J.STRUCT.BIOL. V. 195 11 2016 JRNL REFN ISSN 1047-8477 JRNL PMID 27183903 JRNL DOI 10.1016/J.JSB.2016.05.005 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 109.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1172 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 171.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.84000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : -9.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.528 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.465 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 69.893 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5467 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5143 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7386 ; 1.278 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11870 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 659 ; 6.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;38.283 ;24.982 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 985 ;13.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.983 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 795 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6201 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1248 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2645 ; 1.313 ;10.468 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2644 ; 1.312 ;10.468 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3301 ; 2.372 ;15.703 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2820 ; 1.016 ;10.490 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 210 C 554 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3980 180.8003 89.6967 REMARK 3 T TENSOR REMARK 3 T11: 0.9890 T22: 0.6748 REMARK 3 T33: 1.0394 T12: 0.4733 REMARK 3 T13: 0.1073 T23: -0.2117 REMARK 3 L TENSOR REMARK 3 L11: 2.3019 L22: 1.7476 REMARK 3 L33: 4.9989 L12: 0.3043 REMARK 3 L13: -0.3519 L23: -0.0894 REMARK 3 S TENSOR REMARK 3 S11: -0.1962 S12: -0.6786 S13: 0.9076 REMARK 3 S21: 1.0085 S22: 0.6617 S23: 0.6807 REMARK 3 S31: -0.1476 S32: -0.1777 S33: -0.4655 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 555 C 793 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5931 228.7119 61.9743 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.0387 REMARK 3 T33: 0.1834 T12: -0.0083 REMARK 3 T13: 0.1012 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 5.2057 L22: 4.3946 REMARK 3 L33: 2.8567 L12: 1.3802 REMARK 3 L13: 1.0314 L23: 0.3269 REMARK 3 S TENSOR REMARK 3 S11: -0.3631 S12: 0.2138 S13: -0.3193 REMARK 3 S21: -0.4805 S22: 0.1233 S23: 0.4191 REMARK 3 S31: 0.1899 S32: -0.1496 S33: 0.2398 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 794 C 881 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9012 227.0449 97.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.5638 T22: 0.7066 REMARK 3 T33: 0.2028 T12: -0.1143 REMARK 3 T13: 0.3039 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 6.9586 L22: 3.2395 REMARK 3 L33: 8.6747 L12: -1.4244 REMARK 3 L13: -0.3976 L23: 0.2140 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: -0.0383 S13: -0.1130 REMARK 3 S21: 0.0949 S22: 0.0852 S23: 0.2968 REMARK 3 S31: 0.4821 S32: -0.6596 S33: -0.0243 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1290066251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17198 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1NB8, 2YLM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350 0.2M NA CITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 97.52000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.89000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.52000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.89000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.52000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.89000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 97.52000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.89000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 109.89000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 109.89000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.89000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 109.89000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 97.52000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 97.52000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 97.52000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 57.59150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 97.52000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 203 REMARK 465 PRO C 204 REMARK 465 LEU C 205 REMARK 465 GLY C 206 REMARK 465 SER C 207 REMARK 465 LYS C 208 REMARK 465 LYS C 209 REMARK 465 ASP C 459 REMARK 465 ASN C 460 REMARK 465 ASP C 502 REMARK 465 ASP C 503 REMARK 465 ASP C 504 REMARK 465 LEU C 505 REMARK 465 SER C 506 REMARK 465 VAL C 507 REMARK 465 ARG C 508 REMARK 465 HIS C 509 REMARK 465 LYS C 882 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS C 210 CG ND1 CD2 CE1 NE2 REMARK 470 TYR C 411 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 412 CG OD1 OD2 REMARK 470 GLN C 414 CG CD OE1 NE2 REMARK 470 THR C 415 OG1 CG2 REMARK 470 ASP C 416 CG OD1 OD2 REMARK 470 GLN C 417 CG CD OE1 NE2 REMARK 470 ASN C 418 CG OD1 ND2 REMARK 470 HIS C 461 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 871 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS C 223 -123.96 64.44 REMARK 500 ASP C 376 -2.86 73.42 REMARK 500 PRO C 413 -172.64 -64.52 REMARK 500 THR C 415 -40.37 153.42 REMARK 500 ASP C 416 136.92 160.55 REMARK 500 LYS C 443 -4.22 79.40 REMARK 500 ASP C 482 -117.30 53.25 REMARK 500 ASN C 497 53.75 -118.81 REMARK 500 GLN C 529 134.70 -36.16 REMARK 500 ASP C 582 -177.38 74.28 REMARK 500 ASN C 741 15.86 55.01 REMARK 500 ASN C 831 -2.07 62.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 5FWI C 207 882 UNP Q93009 UBP7_HUMAN 207 882 SEQADV 5FWI GLY C 203 UNP Q93009 EXPRESSION TAG SEQADV 5FWI PRO C 204 UNP Q93009 EXPRESSION TAG SEQADV 5FWI LEU C 205 UNP Q93009 EXPRESSION TAG SEQADV 5FWI GLY C 206 UNP Q93009 EXPRESSION TAG SEQRES 1 C 680 GLY PRO LEU GLY SER LYS LYS HIS THR GLY TYR VAL GLY SEQRES 2 C 680 LEU LYS ASN GLN GLY ALA THR CYS TYR MET ASN SER LEU SEQRES 3 C 680 LEU GLN THR LEU PHE PHE THR ASN GLN LEU ARG LYS ALA SEQRES 4 C 680 VAL TYR MET MET PRO THR GLU GLY ASP ASP SER SER LYS SEQRES 5 C 680 SER VAL PRO LEU ALA LEU GLN ARG VAL PHE TYR GLU LEU SEQRES 6 C 680 GLN HIS SER ASP LYS PRO VAL GLY THR LYS LYS LEU THR SEQRES 7 C 680 LYS SER PHE GLY TRP GLU THR LEU ASP SER PHE MET GLN SEQRES 8 C 680 HIS ASP VAL GLN GLU LEU CYS ARG VAL LEU LEU ASP ASN SEQRES 9 C 680 VAL GLU ASN LYS MET LYS GLY THR CYS VAL GLU GLY THR SEQRES 10 C 680 ILE PRO LYS LEU PHE ARG GLY LYS MET VAL SER TYR ILE SEQRES 11 C 680 GLN CYS LYS GLU VAL ASP TYR ARG SER ASP ARG ARG GLU SEQRES 12 C 680 ASP TYR TYR ASP ILE GLN LEU SER ILE LYS GLY LYS LYS SEQRES 13 C 680 ASN ILE PHE GLU SER PHE VAL ASP TYR VAL ALA VAL GLU SEQRES 14 C 680 GLN LEU ASP GLY ASP ASN LYS TYR ASP ALA GLY GLU HIS SEQRES 15 C 680 GLY LEU GLN GLU ALA GLU LYS GLY VAL LYS PHE LEU THR SEQRES 16 C 680 LEU PRO PRO VAL LEU HIS LEU GLN LEU MET ARG PHE MET SEQRES 17 C 680 TYR ASP PRO GLN THR ASP GLN ASN ILE LYS ILE ASN ASP SEQRES 18 C 680 ARG PHE GLU PHE PRO GLU GLN LEU PRO LEU ASP GLU PHE SEQRES 19 C 680 LEU GLN LYS THR ASP PRO LYS ASP PRO ALA ASN TYR ILE SEQRES 20 C 680 LEU HIS ALA VAL LEU VAL HIS SER GLY ASP ASN HIS GLY SEQRES 21 C 680 GLY HIS TYR VAL VAL TYR LEU ASN PRO LYS GLY ASP GLY SEQRES 22 C 680 LYS TRP CYS LYS PHE ASP ASP ASP VAL VAL SER ARG CYS SEQRES 23 C 680 THR LYS GLU GLU ALA ILE GLU HIS ASN TYR GLY GLY HIS SEQRES 24 C 680 ASP ASP ASP LEU SER VAL ARG HIS CYS THR ASN ALA TYR SEQRES 25 C 680 MET LEU VAL TYR ILE ARG GLU SER LYS LEU SER GLU VAL SEQRES 26 C 680 LEU GLN ALA VAL THR ASP HIS ASP ILE PRO GLN GLN LEU SEQRES 27 C 680 VAL GLU ARG LEU GLN GLU GLU LYS ARG ILE GLU ALA GLN SEQRES 28 C 680 LYS ARG LYS GLU ARG GLN GLU ALA HIS LEU TYR MET GLN SEQRES 29 C 680 VAL GLN ILE VAL ALA GLU ASP GLN PHE CYS GLY HIS GLN SEQRES 30 C 680 GLY ASN ASP MET TYR ASP GLU GLU LYS VAL LYS TYR THR SEQRES 31 C 680 VAL PHE LYS VAL LEU LYS ASN SER SER LEU ALA GLU PHE SEQRES 32 C 680 VAL GLN SER LEU SER GLN THR MET GLY PHE PRO GLN ASP SEQRES 33 C 680 GLN ILE ARG LEU TRP PRO MET GLN ALA ARG SER ASN GLY SEQRES 34 C 680 THR LYS ARG PRO ALA MET LEU ASP ASN GLU ALA ASP GLY SEQRES 35 C 680 ASN LYS THR MET ILE GLU LEU SER ASP ASN GLU ASN PRO SEQRES 36 C 680 TRP THR ILE PHE LEU GLU THR VAL ASP PRO GLU LEU ALA SEQRES 37 C 680 ALA SER GLY ALA THR LEU PRO LYS PHE ASP LYS ASP HIS SEQRES 38 C 680 ASP VAL MET LEU PHE LEU LYS MET TYR ASP PRO LYS THR SEQRES 39 C 680 ARG SER LEU ASN TYR CYS GLY HIS ILE TYR THR PRO ILE SEQRES 40 C 680 SER CYS LYS ILE ARG ASP LEU LEU PRO VAL MET CYS ASP SEQRES 41 C 680 ARG ALA GLY PHE ILE GLN ASP THR SER LEU ILE LEU TYR SEQRES 42 C 680 GLU GLU VAL LYS PRO ASN LEU THR GLU ARG ILE GLN ASP SEQRES 43 C 680 TYR ASP VAL SER LEU ASP LYS ALA LEU ASP GLU LEU MET SEQRES 44 C 680 ASP GLY ASP ILE ILE VAL PHE GLN LYS ASP ASP PRO GLU SEQRES 45 C 680 ASN ASP ASN SER GLU LEU PRO THR ALA LYS GLU TYR PHE SEQRES 46 C 680 ARG ASP LEU TYR HIS ARG VAL ASP VAL ILE PHE CYS ASP SEQRES 47 C 680 LYS THR ILE PRO ASN ASP PRO GLY PHE VAL VAL THR LEU SEQRES 48 C 680 SER ASN ARG MET ASN TYR PHE GLN VAL ALA LYS THR VAL SEQRES 49 C 680 ALA GLN ARG LEU ASN THR ASP PRO MET LEU LEU GLN PHE SEQRES 50 C 680 PHE LYS SER GLN GLY TYR ARG ASP GLY PRO GLY ASN PRO SEQRES 51 C 680 LEU ARG HIS ASN TYR GLU GLY THR LEU ARG ASP LEU LEU SEQRES 52 C 680 GLN PHE PHE LYS PRO ARG GLN PRO LYS LYS LEU TYR TYR SEQRES 53 C 680 GLN GLN LEU LYS HELIX 1 1 CYS C 223 PHE C 234 1 12 HELIX 2 2 THR C 235 MET C 244 1 10 HELIX 3 3 SER C 255 SER C 270 1 16 HELIX 4 4 THR C 276 GLY C 284 1 9 HELIX 5 5 THR C 287 HIS C 294 1 8 HELIX 6 6 ASP C 295 MET C 311 1 17 HELIX 7 7 GLY C 318 ARG C 325 1 8 HELIX 8 8 ASN C 359 ALA C 369 1 11 HELIX 9 9 ASP C 434 PHE C 436 5 3 HELIX 10 10 THR C 489 ILE C 494 1 6 HELIX 11 11 GLU C 495 TYR C 498 5 4 HELIX 12 12 LYS C 523 LEU C 528 1 6 HELIX 13 13 THR C 532 ILE C 536 5 5 HELIX 14 14 PRO C 537 LEU C 563 1 27 HELIX 15 15 GLU C 572 CYS C 576 1 5 HELIX 16 16 SER C 601 GLY C 614 1 14 HELIX 17 17 PRO C 616 ASP C 618 5 3 HELIX 18 18 ASP C 639 GLY C 644 1 6 HELIX 19 19 THR C 647 SER C 652 1 6 HELIX 20 20 ASP C 666 ALA C 671 1 6 HELIX 21 21 LYS C 712 GLY C 725 1 14 HELIX 22 22 SER C 752 LEU C 757 1 6 HELIX 23 23 ASP C 772 SER C 778 5 7 HELIX 24 24 THR C 782 HIS C 792 1 11 HELIX 25 25 ASN C 818 LEU C 830 1 13 HELIX 26 26 ASP C 833 MET C 835 5 3 HELIX 27 27 THR C 860 GLN C 866 1 7 SHEET 1 CA 4 ARG C 340 TYR C 347 0 SHEET 2 CA 4 GLY C 326 CYS C 334 -1 O GLY C 326 N TYR C 347 SHEET 3 CA 4 ALA C 389 PHE C 395 -1 O GLU C 390 N GLN C 333 SHEET 4 CA 4 GLU C 371 LEU C 373 -1 O GLU C 371 N LYS C 391 SHEET 1 CB 7 ILE C 350 LEU C 352 0 SHEET 2 CB 7 VAL C 401 LEU C 406 1 O HIS C 403 N ILE C 350 SHEET 3 CB 7 THR C 511 ARG C 520 -1 O TYR C 514 N LEU C 406 SHEET 4 CB 7 ASN C 447 SER C 457 -1 O ILE C 449 N ILE C 519 SHEET 5 CB 7 TYR C 465 LEU C 469 -1 O VAL C 466 N VAL C 455 SHEET 6 CB 7 TRP C 477 ASP C 481 -1 O CYS C 478 N LEU C 469 SHEET 7 CB 7 VAL C 484 CYS C 488 -1 O VAL C 484 N ASP C 481 SHEET 1 CC 5 ILE C 350 LEU C 352 0 SHEET 2 CC 5 VAL C 401 LEU C 406 1 O HIS C 403 N ILE C 350 SHEET 3 CC 5 THR C 511 ARG C 520 -1 O TYR C 514 N LEU C 406 SHEET 4 CC 5 ASN C 447 SER C 457 -1 O ILE C 449 N ILE C 519 SHEET 5 CC 5 GLN C 430 PRO C 432 -1 O LEU C 431 N TYR C 448 SHEET 1 CD 2 TYR C 379 ASP C 380 0 SHEET 2 CD 2 LEU C 386 GLN C 387 -1 O GLN C 387 N TYR C 379 SHEET 1 CE 5 THR C 592 LEU C 597 0 SHEET 2 CE 5 TYR C 564 ALA C 571 -1 O MET C 565 N VAL C 596 SHEET 3 CE 5 PRO C 657 THR C 664 1 O TRP C 658 N GLN C 568 SHEET 4 CE 5 ILE C 620 ALA C 627 -1 O ARG C 621 N GLU C 663 SHEET 5 CE 5 LYS C 633 PRO C 635 -1 O ARG C 634 N GLN C 626 SHEET 1 CF 5 SER C 698 PRO C 708 0 SHEET 2 CF 5 ASP C 684 ASP C 693 -1 O VAL C 685 N THR C 707 SHEET 3 CF 5 ILE C 765 LYS C 770 1 O ILE C 766 N LYS C 690 SHEET 4 CF 5 LEU C 732 LYS C 739 -1 O ILE C 733 N GLN C 769 SHEET 5 CF 5 LEU C 742 ARG C 745 -1 O LEU C 742 N VAL C 738 SHEET 1 CG 5 PHE C 809 SER C 814 0 SHEET 2 CG 5 ARG C 793 ASP C 800 -1 O VAL C 794 N LEU C 813 SHEET 3 CG 5 LYS C 874 GLN C 880 1 O LYS C 874 N ILE C 797 SHEET 4 CG 5 LEU C 837 SER C 842 -1 O GLN C 838 N GLN C 879 SHEET 5 CG 5 PRO C 849 LEU C 853 -1 N GLY C 850 O LYS C 841 CRYST1 115.183 195.040 219.780 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004550 0.00000