HEADER HYDROLASE 02-MAR-16 5FXL TITLE STRUCTURE OF TRYPSIN SOLVED BY MR FROM DATA COLLECTED BY DIRECT DATA TITLE 2 COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-TRYPSIN, TRYPSIN; COMPND 5 EC: 3.4.21.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: COW; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.BOWLER,D.NURIZZO REVDAT 5 13-NOV-24 5FXL 1 REMARK REVDAT 4 10-JAN-24 5FXL 1 REMARK LINK REVDAT 3 23-AUG-17 5FXL 1 REMARK REVDAT 2 17-AUG-16 5FXL 1 JRNL REVDAT 1 16-MAR-16 5FXL 0 JRNL AUTH D.NURIZZO,M.W.BOWLER,H.CASEROTTO,F.DOBIAS,T.GIRAUD,J.SURR, JRNL AUTH 2 N.GUICHARD,G.PAPP,M.GUIJARRO,C.MUELLER-DIECKMANN,D.FLOT, JRNL AUTH 3 S.MCSWEENEY,F.CIPRIANI,P.THEVENEAU,G.A.LEONARD JRNL TITL ROBODIFF: COMBINING A SAMPLE CHANGER AND GONIOMETER FOR JRNL TITL 2 HIGHLY AUTOMATED MACROMOLECULAR CRYSTALLOGRAPHY EXPERIMENTS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 72 966 2016 JRNL REFN ISSN 0907-4449 JRNL PMID 27487827 JRNL DOI 10.1107/S205979831601158X REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 25130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1662 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.567 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1684 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1553 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2280 ; 1.893 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3583 ; 1.020 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;39.583 ;25.862 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 270 ;12.252 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;14.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 258 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1909 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 370 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 887 ; 1.387 ; 2.058 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 886 ; 1.377 ; 2.056 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1097 ; 2.179 ; 3.072 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 797 ; 2.249 ; 2.364 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2330 0.4343 7.9878 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.0653 REMARK 3 T33: 0.0021 T12: 0.0077 REMARK 3 T13: 0.0031 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.7729 L22: 1.9442 REMARK 3 L33: 2.1347 L12: -0.1374 REMARK 3 L13: -0.7751 L23: 0.1346 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.0056 S13: 0.0062 REMARK 3 S21: -0.0871 S22: 0.0540 S23: -0.0556 REMARK 3 S31: 0.0789 S32: 0.1140 S33: 0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : C110 REMARK 200 OPTICS : BE CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4I8G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.41750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.41750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 LYS A -6 REMARK 465 THR A -5 REMARK 465 PHE A -4 REMARK 465 ILE A -3 REMARK 465 PHE A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 34 C SER A 37 N 0.191 REMARK 500 LEU A 67 C GLY A 69 N 0.197 REMARK 500 LYS A 206 C LEU A 211 N 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 -67.84 -124.48 REMARK 500 ASN A 79 -17.63 78.65 REMARK 500 ASN A 115 -157.48 -158.34 REMARK 500 SER A 147 -71.31 -90.14 REMARK 500 SER A 216 -66.09 -120.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 206 -15.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 ASN A 72 O 87.3 REMARK 620 3 VAL A 75 O 164.1 84.3 REMARK 620 4 GLU A 80 OE2 104.5 155.6 88.4 REMARK 620 5 HOH A2032 O 82.3 102.3 86.3 100.5 REMARK 620 6 HOH A2033 O 88.0 86.9 105.0 72.5 166.2 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FXM RELATED DB: PDB REMARK 900 STRUCTURE OF FAE SOLVED BY SAD FROM DATA COLLECTED BY DIRECT DATA REMARK 900 COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER REMARK 900 RELATED ID: 5FXN RELATED DB: PDB REMARK 900 STRUCTURE OF THERMOLYSIN SOLVED BY SAD FROM DATA COLLECTED BY REMARK 900 DIRECT DATA COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER DBREF 5FXL A -7 248 UNP P00760 TRY1_BOVIN 1 246 SEQRES 1 A 246 MET LYS THR PHE ILE PHE LEU ALA LEU LEU GLY ALA ALA SEQRES 2 A 246 VAL ALA PHE PRO VAL ASP ASP ASP ASP LYS ILE VAL GLY SEQRES 3 A 246 GLY TYR THR CYS GLY ALA ASN THR VAL PRO TYR GLN VAL SEQRES 4 A 246 SER LEU ASN SER GLY TYR HIS PHE CYS GLY GLY SER LEU SEQRES 5 A 246 ILE ASN SER GLN TRP VAL VAL SER ALA ALA HIS CYS TYR SEQRES 6 A 246 LYS SER GLY ILE GLN VAL ARG LEU GLY GLU ASP ASN ILE SEQRES 7 A 246 ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SER ALA SER SEQRES 8 A 246 LYS SER ILE VAL HIS PRO SER TYR ASN SER ASN THR LEU SEQRES 9 A 246 ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SER ALA ALA SEQRES 10 A 246 SER LEU ASN SER ARG VAL ALA SER ILE SER LEU PRO THR SEQRES 11 A 246 SER CYS ALA SER ALA GLY THR GLN CYS LEU ILE SER GLY SEQRES 12 A 246 TRP GLY ASN THR LYS SER SER GLY THR SER TYR PRO ASP SEQRES 13 A 246 VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SER ASP SER SEQRES 14 A 246 SER CYS LYS SER ALA TYR PRO GLY GLN ILE THR SER ASN SEQRES 15 A 246 MET PHE CYS ALA GLY TYR LEU GLU GLY GLY LYS ASP SER SEQRES 16 A 246 CYS GLN GLY ASP SER GLY GLY PRO VAL VAL CYS SER GLY SEQRES 17 A 246 LYS LEU GLN GLY ILE VAL SER TRP GLY SER GLY CYS ALA SEQRES 18 A 246 GLN LYS ASN LYS PRO GLY VAL TYR THR LYS VAL CYS ASN SEQRES 19 A 246 TYR VAL SER TRP ILE LYS GLN THR ILE ALA SER ASN HET CA A 301 1 HET BEN A 302 9 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A1001 5 HETNAM CA CALCIUM ION HETNAM BEN BENZAMIDINE HETNAM SO4 SULFATE ION FORMUL 2 CA CA 2+ FORMUL 3 BEN C7 H8 N2 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *85(H2 O) HELIX 1 1 ALA A 55 TYR A 59 5 5 HELIX 2 2 SER A 164 TYR A 172 1 9 HELIX 3 3 TYR A 237 ASN A 248 1 12 SHEET 1 AA 7 TYR A 20 THR A 21 0 SHEET 2 AA 7 LYS A 156 PRO A 161 -1 O CYS A 157 N TYR A 20 SHEET 3 AA 7 GLN A 135 GLY A 140 -1 O CYS A 136 N ALA A 160 SHEET 4 AA 7 PRO A 200 CYS A 203 -1 O PRO A 200 N SER A 139 SHEET 5 AA 7 LYS A 206 TRP A 217 -1 O LYS A 206 N CYS A 203 SHEET 6 AA 7 GLY A 229 LYS A 233 -1 O VAL A 230 N TRP A 217 SHEET 7 AA 7 MET A 180 ALA A 183 -1 O PHE A 181 N TYR A 231 SHEET 1 AB 7 GLN A 30 ASN A 34 0 SHEET 2 AB 7 HIS A 40 ASN A 48 -1 N PHE A 41 O LEU A 33 SHEET 3 AB 7 TRP A 51 SER A 54 -1 O TRP A 51 N ILE A 47 SHEET 4 AB 7 MET A 104 LEU A 108 -1 O MET A 104 N SER A 54 SHEET 5 AB 7 GLN A 81 VAL A 90 -1 N SER A 86 O LYS A 107 SHEET 6 AB 7 GLN A 64 LEU A 67 -1 O VAL A 65 N ILE A 83 SHEET 7 AB 7 GLN A 30 ASN A 34 -1 O SER A 32 N ARG A 66 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.10 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.10 SSBOND 3 CYS A 128 CYS A 235 1555 1555 2.92 SSBOND 4 CYS A 136 CYS A 203 1555 1555 2.10 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.10 SSBOND 6 CYS A 193 CYS A 222 1555 1555 2.15 LINK OE1 GLU A 70 CA CA A 301 1555 1555 2.31 LINK O ASN A 72 CA CA A 301 1555 1555 2.38 LINK O VAL A 75 CA CA A 301 1555 1555 2.34 LINK OE2 GLU A 80 CA CA A 301 1555 1555 2.38 LINK CA CA A 301 O HOH A2032 1555 1555 2.21 LINK CA CA A 301 O HOH A2033 1555 1555 2.43 SITE 1 AC1 6 GLU A 70 ASN A 72 VAL A 75 GLU A 80 SITE 2 AC1 6 HOH A2032 HOH A2033 SITE 1 AC2 7 ASP A 191 SER A 192 SER A 197 TRP A 217 SITE 2 AC2 7 GLY A 221 GLY A 229 SO4 A 303 SITE 1 AC3 5 HIS A 57 GLN A 194 GLY A 195 SER A 197 SITE 2 AC3 5 BEN A 302 SITE 1 AC4 4 LYS A 169 PRO A 173 GLY A 174 HOH A2069 SITE 1 AC5 4 PRO A 152 ASP A 153 VAL A 154 LYS A 156 CRYST1 60.835 64.682 69.960 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014294 0.00000