data_5FZW # _entry.id 5FZW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5FZW pdb_00005fzw 10.2210/pdb5fzw/pdb PDBE EBI-66493 ? ? WWPDB D_1290066493 ? ? BMRB 26003 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5FZV unspecified 'HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE U3-SCYTOTOXIN-STH1A' PDB 5FZX unspecified 'HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE U5-SCYTOTOXIN-STH1A' BMRB 26003 unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5FZW _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2016-03-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # _audit_author.name 'Loening, N.M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Characterization of Three Venom Peptides from the Spitting Spider Scytodes Thoracica.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 11 _citation.page_first 56291 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27227898 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PONE.0156291 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ariki, N.K.' 1 ? primary 'Munoz, L.E.' 2 ? primary 'Armitage, E.L.' 3 ? primary 'Goodstein, F.R.' 4 ? primary 'George, K.G.' 5 ? primary 'Smith, V.L.' 6 ? primary 'Vetter, I.' 7 ? primary 'Herzig, V.' 8 ? primary 'King, G.F.' 9 ? primary 'Loening, N.M.' 10 ? # _cell.entry_id 5FZW _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FZW _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Venom peptide U3-SYTX-Sth1h' _entity.formula_weight 3622.329 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GLIESIACMQKGLPCMEHVDCCHGVCDSLFCLY _entity_poly.pdbx_seq_one_letter_code_can GLIESIACMQKGLPCMEHVDCCHGVCDSLFCLY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 ILE n 1 4 GLU n 1 5 SER n 1 6 ILE n 1 7 ALA n 1 8 CYS n 1 9 MET n 1 10 GLN n 1 11 LYS n 1 12 GLY n 1 13 LEU n 1 14 PRO n 1 15 CYS n 1 16 MET n 1 17 GLU n 1 18 HIS n 1 19 VAL n 1 20 ASP n 1 21 CYS n 1 22 CYS n 1 23 HIS n 1 24 GLY n 1 25 VAL n 1 26 CYS n 1 27 ASP n 1 28 SER n 1 29 LEU n 1 30 PHE n 1 31 CYS n 1 32 LEU n 1 33 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 33 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Scytodes thoracica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1112478 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ 'VENOM GLAND' _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PLIC-MBP _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'TRANSCRIPT IDENTIFIED FROM CDNA LIBRARY CONSTRUCTED FROM VENOM GLAND MRNA' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A0A0VBR5_9ARAC _struct_ref.pdbx_db_accession A0A0A0VBR5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LIESIACMQKGLPCMEHVDCCHGVCDSLFCLY _struct_ref.pdbx_align_begin 40 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5FZW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 33 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A0A0VBR5 _struct_ref_seq.db_align_beg 40 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 71 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 33 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5FZW _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A0A0A0VBR5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '13C ARO HSQC NOESY' 1 2 1 '13C AROMATIC HSQC' 1 3 1 '13C CT-HSQC' 1 4 1 '13C HSQC' 1 5 1 '13C HSQC NOESY' 1 6 1 '15N HMQC' 1 7 1 '15N HMQC 2' 1 8 1 '15N HSQC NOESY' 1 9 1 '1H NOESY (120MS)' 1 10 1 '1H TOCSY' 1 11 1 'HCCH TOCSY' 1 12 1 HNCACB 1 13 1 HNCACO 1 14 1 HNCO 1 15 1 HNCOCACB 1 16 2 '15N HSQC (15N SAMPLE)' 2 17 2 '1H TOCSY (15N SAMPLE)' 2 18 2 'NOESY 120MS (15N SAMPLE)' 2 19 2 'NOESY 200MS (15N SAMPLE)' 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298.0 atm 1.0 6.5 0.03 ? pH K 2 298.0 atm 1.0 6.5 0.03 ? pH K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents 1 '95% H2O/5% D2O' 2 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 AVANCE Bruker 600 2 AVANCE Bruker 600 # _pdbx_nmr_refine.entry_id 5FZW _pdbx_nmr_refine.method CNS _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE PAPER CITATION.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 5FZW _pdbx_nmr_details.text ;THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C,15N-LABELED U3-SCYTOTOXIN-STH1H, AND CALCULATED USING ARIA2 WITH WATER REFINEMENT. ; # _pdbx_nmr_ensemble.entry_id 5FZW _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'TOTAL ENERGY' # _pdbx_nmr_representative.entry_id 5FZW _pdbx_nmr_representative.conformer_id 14 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS 1.2 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' 'CcpNmr Analysis' 2.4 ? 2 'structure solution' TALOS-N 4.12 ? 3 # _exptl.entry_id 5FZW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 5FZW _struct.title 'High resolution solution NMR structure of the spider venom peptide U3- scytotoxin-Sth1h' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5FZW _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, SPIDER VENOM PEPTIDE, ICK' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 17 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id CYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 21 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 17 _struct_conf.end_auth_comp_id CYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 21 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 8 A CYS 22 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 15 A CYS 26 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf3 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 21 A CYS 31 1_555 ? ? ? ? ? ? ? 2.029 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 26 ? ASP A 27 ? CYS A 26 ASP A 27 AA1 2 PHE A 30 ? CYS A 31 ? PHE A 30 CYS A 31 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ASP _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 27 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ASP _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 27 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 30 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 30 # _database_PDB_matrix.entry_id 5FZW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5FZW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 MET 9 9 9 MET MET A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 HIS 23 23 23 HIS HIS A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 TYR 33 33 33 TYR TYR A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-08 2 'Structure model' 2 0 2017-06-14 3 'Structure model' 2 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Source and taxonomy' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' entity 3 2 'Structure model' entity_src_gen 4 2 'Structure model' pdbx_struct_sheet_hbond 5 2 'Structure model' struct_conf 6 2 'Structure model' struct_ref 7 2 'Structure model' struct_ref_seq 8 2 'Structure model' struct_ref_seq_dif 9 2 'Structure model' struct_sheet 10 2 'Structure model' struct_sheet_order 11 2 'Structure model' struct_sheet_range 12 3 'Structure model' database_2 13 3 'Structure model' pdbx_database_status 14 3 'Structure model' pdbx_nmr_software 15 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.Cartn_x' 2 2 'Structure model' '_atom_site.Cartn_y' 3 2 'Structure model' '_atom_site.Cartn_z' 4 2 'Structure model' '_entity.pdbx_description' 5 2 'Structure model' '_entity_src_gen.gene_src_common_name' 6 2 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 7 2 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 8 2 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 9 2 'Structure model' '_entity_src_gen.pdbx_seq_type' 10 2 'Structure model' '_pdbx_struct_sheet_hbond.sheet_id' 11 2 'Structure model' '_struct_conf.end_auth_comp_id' 12 2 'Structure model' '_struct_conf.end_auth_seq_id' 13 2 'Structure model' '_struct_conf.end_label_comp_id' 14 2 'Structure model' '_struct_conf.end_label_seq_id' 15 2 'Structure model' '_struct_conf.pdbx_PDB_helix_id' 16 2 'Structure model' '_struct_conf.pdbx_PDB_helix_length' 17 2 'Structure model' '_struct_ref.db_code' 18 2 'Structure model' '_struct_ref.pdbx_align_begin' 19 2 'Structure model' '_struct_ref.pdbx_db_accession' 20 2 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 21 2 'Structure model' '_struct_ref_seq.db_align_beg' 22 2 'Structure model' '_struct_ref_seq.db_align_end' 23 2 'Structure model' '_struct_ref_seq.pdbx_db_accession' 24 2 'Structure model' '_struct_ref_seq_dif.db_mon_id' 25 2 'Structure model' '_struct_ref_seq_dif.pdbx_seq_db_accession_code' 26 2 'Structure model' '_struct_sheet.id' 27 2 'Structure model' '_struct_sheet_order.sheet_id' 28 2 'Structure model' '_struct_sheet_range.sheet_id' 29 3 'Structure model' '_database_2.pdbx_DOI' 30 3 'Structure model' '_database_2.pdbx_database_accession' 31 3 'Structure model' '_pdbx_database_status.status_code_cs' 32 3 'Structure model' '_pdbx_database_status.status_code_mr' 33 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 34 3 'Structure model' '_pdbx_nmr_software.name' 35 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_entry_details.entry_id 5FZW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE DEPOSITED IN THE ARACHNOSERVER SPIDER TOXIN DATABASE (WWW.ARACHNOSERVER.ORG) ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 O A ASP 27 ? ? HG A SER 28 ? ? 1.59 2 5 HD1 A HIS 23 ? ? OXT A TYR 33 ? ? 1.55 3 5 H A GLU 4 ? ? OE1 A GLU 17 ? ? 1.60 4 6 HD1 A HIS 23 ? ? OXT A TYR 33 ? ? 1.54 5 7 H A ILE 3 ? ? OE2 A GLU 17 ? ? 1.59 6 10 O A ASP 27 ? ? HG A SER 28 ? ? 1.59 7 13 H A MET 9 ? ? O A ASP 20 ? ? 1.56 8 13 HD1 A HIS 23 ? ? O A TYR 33 ? ? 1.57 9 14 HD1 A HIS 23 ? ? OXT A TYR 33 ? ? 1.59 10 15 HD1 A HIS 23 ? ? OXT A TYR 33 ? ? 1.55 11 16 HD1 A HIS 23 ? ? O A TYR 33 ? ? 1.53 12 17 HD1 A HIS 23 ? ? OXT A TYR 33 ? ? 1.59 13 18 HD1 A HIS 23 ? ? OXT A TYR 33 ? ? 1.59 14 19 HZ1 A LYS 11 ? ? O A TYR 33 ? ? 1.57 15 20 HD1 A HIS 23 ? ? O A TYR 33 ? ? 1.55 16 20 H A MET 9 ? ? O A ASP 20 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 3 ? ? 76.84 154.68 2 1 GLU A 4 ? ? 78.21 139.96 3 1 SER A 5 ? ? 73.98 167.31 4 1 LEU A 29 ? ? -41.09 88.23 5 2 ILE A 3 ? ? 68.60 67.33 6 2 GLU A 4 ? ? -146.24 -55.53 7 2 ILE A 6 ? ? -98.43 44.73 8 2 LEU A 29 ? ? -41.28 88.48 9 3 ILE A 3 ? ? 62.92 80.45 10 3 GLU A 4 ? ? -135.69 -71.87 11 3 SER A 5 ? ? -170.93 53.82 12 3 LEU A 29 ? ? -41.37 86.74 13 3 CYS A 31 ? ? -55.68 105.27 14 4 ILE A 3 ? ? 61.18 74.25 15 4 GLU A 4 ? ? -150.89 -40.61 16 4 LEU A 29 ? ? -41.30 89.11 17 4 CYS A 31 ? ? -57.18 105.97 18 5 ILE A 3 ? ? 37.79 86.02 19 5 LEU A 29 ? ? -40.90 88.48 20 6 LEU A 2 ? ? 70.77 151.21 21 6 ILE A 3 ? ? 66.22 76.13 22 6 GLU A 4 ? ? -139.63 -62.15 23 6 LEU A 29 ? ? -41.03 87.73 24 6 CYS A 31 ? ? -58.33 109.04 25 7 ILE A 3 ? ? 72.72 65.50 26 7 GLU A 4 ? ? -139.57 -72.52 27 7 ILE A 6 ? ? -103.19 56.38 28 7 LEU A 29 ? ? -43.35 86.31 29 8 LEU A 2 ? ? 69.75 154.51 30 8 ILE A 3 ? ? 58.99 81.40 31 8 GLU A 4 ? ? -136.27 -44.07 32 8 LEU A 29 ? ? -40.95 88.31 33 9 LEU A 2 ? ? 70.40 129.37 34 9 ILE A 3 ? ? 67.66 90.22 35 9 GLU A 4 ? ? -142.01 -44.51 36 9 SER A 28 ? ? 60.33 70.03 37 9 LEU A 29 ? ? -40.11 87.75 38 10 ILE A 3 ? ? 54.77 82.86 39 10 GLU A 4 ? ? -132.61 -70.99 40 10 SER A 5 ? ? -176.71 118.70 41 10 LEU A 29 ? ? -43.22 88.16 42 10 CYS A 31 ? ? -59.85 106.38 43 11 ILE A 3 ? ? 66.92 71.06 44 11 GLU A 4 ? ? -113.91 -80.96 45 11 SER A 5 ? ? -179.49 31.38 46 11 LEU A 29 ? ? -41.34 86.47 47 12 ILE A 3 ? ? 72.29 56.06 48 12 GLU A 4 ? ? -119.30 -91.31 49 12 SER A 5 ? ? -175.73 138.38 50 12 ILE A 6 ? ? 174.59 169.46 51 12 LEU A 29 ? ? -40.31 87.95 52 12 CYS A 31 ? ? -59.84 105.09 53 13 ILE A 3 ? ? 64.83 65.72 54 13 GLU A 4 ? ? -137.26 -75.89 55 13 LEU A 29 ? ? -42.99 88.38 56 14 ILE A 3 ? ? 64.88 67.65 57 14 GLU A 4 ? ? -143.79 -41.01 58 14 LEU A 29 ? ? -41.48 87.49 59 14 CYS A 31 ? ? -57.36 106.07 60 15 LEU A 2 ? ? 57.83 -156.53 61 15 ILE A 3 ? ? 58.97 87.20 62 15 GLU A 4 ? ? -149.56 -61.11 63 15 LEU A 29 ? ? -42.76 87.56 64 16 ILE A 3 ? ? 68.98 66.61 65 16 GLU A 4 ? ? -133.58 -69.75 66 16 LEU A 29 ? ? -42.92 87.89 67 16 CYS A 31 ? ? -56.67 108.63 68 17 ILE A 3 ? ? 58.84 79.55 69 17 GLU A 4 ? ? -135.68 -50.40 70 17 SER A 28 ? ? 60.73 69.53 71 17 LEU A 29 ? ? -41.07 87.52 72 18 ILE A 3 ? ? 73.49 51.64 73 18 GLU A 4 ? ? -131.40 -147.01 74 18 SER A 5 ? ? -79.38 -133.27 75 18 ILE A 6 ? ? 80.75 138.75 76 18 LEU A 29 ? ? -40.80 88.47 77 18 CYS A 31 ? ? -57.73 104.33 78 19 ILE A 3 ? ? 59.80 73.90 79 19 SER A 5 ? ? 61.16 -150.57 80 19 ILE A 6 ? ? 75.47 130.17 81 19 LEU A 29 ? ? -41.21 85.93 82 20 ILE A 3 ? ? 70.50 48.97 83 20 GLU A 4 ? ? -129.35 -101.37 84 20 LEU A 29 ? ? -40.51 86.72 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 28 ? ? LEU A 29 ? ? -139.93 2 2 SER A 28 ? ? LEU A 29 ? ? -140.09 3 3 SER A 28 ? ? LEU A 29 ? ? -137.10 4 4 SER A 28 ? ? LEU A 29 ? ? -141.74 5 5 SER A 28 ? ? LEU A 29 ? ? -140.09 6 6 SER A 28 ? ? LEU A 29 ? ? -142.03 7 7 SER A 28 ? ? LEU A 29 ? ? -140.64 8 8 SER A 28 ? ? LEU A 29 ? ? -140.47 9 9 SER A 28 ? ? LEU A 29 ? ? -142.91 10 10 SER A 28 ? ? LEU A 29 ? ? -140.64 11 11 SER A 28 ? ? LEU A 29 ? ? -137.45 12 12 SER A 28 ? ? LEU A 29 ? ? -141.10 13 13 SER A 28 ? ? LEU A 29 ? ? -139.97 14 14 SER A 28 ? ? LEU A 29 ? ? -140.32 15 15 SER A 28 ? ? LEU A 29 ? ? -142.14 16 16 SER A 28 ? ? LEU A 29 ? ? -138.69 17 17 SER A 28 ? ? LEU A 29 ? ? -141.61 18 18 SER A 28 ? ? LEU A 29 ? ? -141.27 19 19 SER A 28 ? ? LEU A 29 ? ? -137.22 20 20 SER A 28 ? ? LEU A 29 ? ? -137.92 #