HEADER TOXIN 15-MAR-16 5FZW TITLE HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE U3- TITLE 2 SCYTOTOXIN-STH1H COMPND MOL_ID: 1; COMPND 2 MOLECULE: VENOM PEPTIDE U3-SYTX-STH1H; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCYTODES THORACICA; SOURCE 3 ORGANISM_TAXID: 1112478; SOURCE 4 ORGAN: VENOM GLAND; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLIC-MBP; SOURCE 10 OTHER_DETAILS: TRANSCRIPT IDENTIFIED FROM CDNA LIBRARY CONSTRUCTED SOURCE 11 FROM VENOM GLAND MRNA KEYWDS TOXIN, SPIDER VENOM PEPTIDE, ICK EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.M.LOENING REVDAT 3 14-JUN-23 5FZW 1 REMARK REVDAT 2 14-JUN-17 5FZW 1 SEQADV REVDAT 1 08-JUN-16 5FZW 0 JRNL AUTH N.K.ARIKI,L.E.MUNOZ,E.L.ARMITAGE,F.R.GOODSTEIN,K.G.GEORGE, JRNL AUTH 2 V.L.SMITH,I.VETTER,V.HERZIG,G.F.KING,N.M.LOENING JRNL TITL CHARACTERIZATION OF THREE VENOM PEPTIDES FROM THE SPITTING JRNL TITL 2 SPIDER SCYTODES THORACICA. JRNL REF PLOS ONE V. 11 56291 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27227898 JRNL DOI 10.1371/JOURNAL.PONE.0156291 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 PAPER CITATION. REMARK 4 REMARK 4 5FZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066493. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 0.03; 0.03 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% H2O/5% D2O; 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C ARO HSQC NOESY; 13C AROMATIC REMARK 210 HSQC; 13C CT-HSQC; 13C HSQC; 13C REMARK 210 HSQC NOESY; 15N HMQC; 15N HMQC 2; REMARK 210 15N HSQC NOESY; 1H NOESY (120MS) REMARK 210 ; 1H TOCSY; HCCH TOCSY; HNCACB; REMARK 210 HNCACO; HNCO; HNCOCACB; 15N HSQC REMARK 210 (15N SAMPLE); 1H TOCSY (15N REMARK 210 SAMPLE); NOESY 120MS (15N SAMPLE) REMARK 210 ; NOESY 200MS (15N SAMPLE) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4, TALOS-N REMARK 210 4.12 REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 14 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C,15N-LABELED U3-SCYTOTOXIN-STH1H, AND REMARK 210 CALCULATED USING ARIA2 WITH WATER REFINEMENT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 3 154.68 76.84 REMARK 500 1 GLU A 4 139.96 78.21 REMARK 500 1 SER A 5 167.31 73.98 REMARK 500 1 LEU A 29 88.23 -41.09 REMARK 500 2 ILE A 3 67.33 68.60 REMARK 500 2 GLU A 4 -55.53 -146.24 REMARK 500 2 ILE A 6 44.73 -98.43 REMARK 500 2 LEU A 29 88.48 -41.28 REMARK 500 3 ILE A 3 80.45 62.92 REMARK 500 3 GLU A 4 -71.87 -135.69 REMARK 500 3 SER A 5 53.82 -170.93 REMARK 500 3 LEU A 29 86.74 -41.37 REMARK 500 3 CYS A 31 105.27 -55.68 REMARK 500 4 ILE A 3 74.25 61.18 REMARK 500 4 GLU A 4 -40.61 -150.89 REMARK 500 4 LEU A 29 89.11 -41.30 REMARK 500 4 CYS A 31 105.97 -57.18 REMARK 500 5 ILE A 3 86.02 37.79 REMARK 500 5 LEU A 29 88.48 -40.90 REMARK 500 6 LEU A 2 151.21 70.77 REMARK 500 6 ILE A 3 76.13 66.22 REMARK 500 6 GLU A 4 -62.15 -139.63 REMARK 500 6 LEU A 29 87.73 -41.03 REMARK 500 6 CYS A 31 109.04 -58.33 REMARK 500 7 ILE A 3 65.50 72.72 REMARK 500 7 GLU A 4 -72.52 -139.57 REMARK 500 7 ILE A 6 56.38 -103.19 REMARK 500 7 LEU A 29 86.31 -43.35 REMARK 500 8 LEU A 2 154.51 69.75 REMARK 500 8 ILE A 3 81.40 58.99 REMARK 500 8 GLU A 4 -44.07 -136.27 REMARK 500 8 LEU A 29 88.31 -40.95 REMARK 500 9 LEU A 2 129.37 70.40 REMARK 500 9 ILE A 3 90.22 67.66 REMARK 500 9 GLU A 4 -44.51 -142.01 REMARK 500 9 SER A 28 70.03 60.33 REMARK 500 9 LEU A 29 87.75 -40.11 REMARK 500 10 ILE A 3 82.86 54.77 REMARK 500 10 GLU A 4 -70.99 -132.61 REMARK 500 10 SER A 5 118.70 -176.71 REMARK 500 10 LEU A 29 88.16 -43.22 REMARK 500 10 CYS A 31 106.38 -59.85 REMARK 500 11 ILE A 3 71.06 66.92 REMARK 500 11 GLU A 4 -80.96 -113.91 REMARK 500 11 SER A 5 31.38 -179.49 REMARK 500 11 LEU A 29 86.47 -41.34 REMARK 500 12 ILE A 3 56.06 72.29 REMARK 500 12 GLU A 4 -91.31 -119.30 REMARK 500 12 SER A 5 138.38 -175.73 REMARK 500 12 ILE A 6 169.46 174.59 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 28 LEU A 29 1 -139.93 REMARK 500 SER A 28 LEU A 29 2 -140.09 REMARK 500 SER A 28 LEU A 29 3 -137.10 REMARK 500 SER A 28 LEU A 29 4 -141.74 REMARK 500 SER A 28 LEU A 29 5 -140.09 REMARK 500 SER A 28 LEU A 29 6 -142.03 REMARK 500 SER A 28 LEU A 29 7 -140.64 REMARK 500 SER A 28 LEU A 29 8 -140.47 REMARK 500 SER A 28 LEU A 29 9 -142.91 REMARK 500 SER A 28 LEU A 29 10 -140.64 REMARK 500 SER A 28 LEU A 29 11 -137.45 REMARK 500 SER A 28 LEU A 29 12 -141.10 REMARK 500 SER A 28 LEU A 29 13 -139.97 REMARK 500 SER A 28 LEU A 29 14 -140.32 REMARK 500 SER A 28 LEU A 29 15 -142.14 REMARK 500 SER A 28 LEU A 29 16 -138.69 REMARK 500 SER A 28 LEU A 29 17 -141.61 REMARK 500 SER A 28 LEU A 29 18 -141.27 REMARK 500 SER A 28 LEU A 29 19 -137.22 REMARK 500 SER A 28 LEU A 29 20 -137.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FZV RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE REMARK 900 U3-SCYTOTOXIN-STH1A REMARK 900 RELATED ID: 5FZX RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE REMARK 900 U5-SCYTOTOXIN-STH1A REMARK 900 RELATED ID: 26003 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DEPOSITED IN THE ARACHNOSERVER SPIDER TOXIN REMARK 999 DATABASE (WWW.ARACHNOSERVER.ORG) DBREF1 5FZW A 2 33 UNP A0A0A0VBR5_9ARAC DBREF2 5FZW A A0A0A0VBR5 40 71 SEQADV 5FZW GLY A 1 UNP A0A0A0VBR EXPRESSION TAG SEQRES 1 A 33 GLY LEU ILE GLU SER ILE ALA CYS MET GLN LYS GLY LEU SEQRES 2 A 33 PRO CYS MET GLU HIS VAL ASP CYS CYS HIS GLY VAL CYS SEQRES 3 A 33 ASP SER LEU PHE CYS LEU TYR HELIX 1 AA1 GLU A 17 CYS A 21 5 5 SHEET 1 AA1 2 CYS A 26 ASP A 27 0 SHEET 2 AA1 2 PHE A 30 CYS A 31 -1 O PHE A 30 N ASP A 27 SSBOND 1 CYS A 8 CYS A 22 1555 1555 2.03 SSBOND 2 CYS A 15 CYS A 26 1555 1555 2.04 SSBOND 3 CYS A 21 CYS A 31 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1