HEADER STRUCTURAL PROTEIN 23-MAR-16 5G0Z TITLE STRUCTURE OF NATIVE GRANULOVIRUS POLYHEDRIN DETERMINED USING AN X-RAY TITLE 2 FREE-ELECTRON LASER COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MATRIX PROTEIN, GRANULOVIRUS POLYHEDRIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYDIA POMONELLA GRANULOVIRUS; SOURCE 3 ORGANISM_COMMON: CPGV; SOURCE 4 ORGANISM_TAXID: 28289 KEYWDS STRUCTURAL PROTEIN, FEL, NATIVE CRYSTALS, NANO CRYSTALLOGRAPHY, KEYWDS 2 SERIAL CRYSTALLOGRAPHY EXPDTA X-RAY DIFFRACTION AUTHOR C.GATI,R.D.BUNKER,D.OBERTHUR,P.METCALF,C.HENRY REVDAT 7 23-OCT-24 5G0Z 1 REMARK REVDAT 6 10-JAN-24 5G0Z 1 REMARK REVDAT 5 28-AUG-19 5G0Z 1 REMARK REVDAT 4 14-NOV-18 5G0Z 1 REMARK ATOM REVDAT 3 17-JAN-18 5G0Z 1 REMARK REVDAT 2 15-MAR-17 5G0Z 1 JRNL REVDAT 1 22-FEB-17 5G0Z 0 JRNL AUTH C.GATI,D.OBERTHUER,O.YEFANOV,R.D.BUNKER,F.STELLATO,E.CHIU, JRNL AUTH 2 S.M.YEH,A.AQUILA,S.BASU,R.BEAN,K.R.BEYERLEIN,S.BOTHA, JRNL AUTH 3 S.BOUTET,D.P.DEPONTE,R.B.DOAK,R.FROMME,L.GALLI,I.GROTJOHANN, JRNL AUTH 4 D.R.JAMES,C.KUPITZ,L.LOMB,M.MESSERSCHMIDT,K.NASS,K.RENDEK, JRNL AUTH 5 R.L.SHOEMAN,D.WANG,U.WEIERSTALL,T.A.WHITE,G.J.WILLIAMS, JRNL AUTH 6 N.A.ZATSEPIN,P.FROMME,J.C.SPENCE,K.N.GOLDIE,J.A.JEHLE, JRNL AUTH 7 P.METCALF,A.BARTY,H.N.CHAPMAN JRNL TITL ATOMIC STRUCTURE OF GRANULIN DETERMINED FROM NATIVE JRNL TITL 2 NANOCRYSTALLINE GRANULOVIRUS USING AN X-RAY FREE-ELECTRON JRNL TITL 3 LASER. JRNL REF PROC. NATL. ACAD. SCI. V. 114 2247 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28202732 JRNL DOI 10.1073/PNAS.1609243114 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5635 - 4.1606 1.00 1328 136 0.1150 0.1544 REMARK 3 2 4.1606 - 3.3031 1.00 1257 148 0.1079 0.1373 REMARK 3 3 3.3031 - 2.8857 1.00 1247 140 0.1391 0.1801 REMARK 3 4 2.8857 - 2.6220 1.00 1270 140 0.1598 0.2252 REMARK 3 5 2.6220 - 2.4341 1.00 1256 129 0.1777 0.2399 REMARK 3 6 2.4341 - 2.2906 1.00 1237 139 0.1802 0.2241 REMARK 3 7 2.2906 - 2.1759 1.00 1277 121 0.2309 0.2744 REMARK 3 8 2.1759 - 2.0812 1.00 1215 150 0.2620 0.2790 REMARK 3 9 2.0812 - 2.0011 1.00 1275 128 0.3664 0.4228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2090 REMARK 3 ANGLE : 0.739 2841 REMARK 3 CHIRALITY : 0.069 299 REMARK 3 PLANARITY : 0.004 371 REMARK 3 DIHEDRAL : 19.520 780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1-5 ARE DISORDERED REMARK 4 REMARK 4 5G0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 82603 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CORNELL-SLAC PIXEL ARRAY REMARK 200 DETECTOR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL V. 0.5.2 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL V. 0.5.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6008. REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1258. REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3JVB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 23.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN VIVO REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.70000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.70000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.70000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.70000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.70000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.70000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.70000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.70000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.70000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.70000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.70000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.70000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.70000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.70000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.70000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.70000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.70000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.70000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.70000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.70000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.70000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.70000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.70000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.70000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 75110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 128450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -369.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 12 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 -1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2093 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 TYR A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 177 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2058 O HOH A 2060 2.09 REMARK 500 O LEU A 183 O HOH A 2051 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH21 ARG A 36 OE2 GLU A 43 4555 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -122.07 56.41 REMARK 500 ASN A 21 -18.89 79.20 REMARK 500 ASN A 91 27.83 -141.17 REMARK 500 LYS A 177 98.90 -67.75 REMARK 500 CYS A 185 -167.91 -122.97 REMARK 500 ARG A 208 131.40 -172.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 5G0Z A 1 248 UNP P87577 GRAN_GVCPM 1 248 SEQRES 1 A 248 MET GLY TYR ASN LYS SER LEU ARG TYR SER ARG HIS ASP SEQRES 2 A 248 GLY THR SER CYS VAL ILE ASP ASN HIS HIS LEU LYS SER SEQRES 3 A 248 LEU GLY ALA VAL LEU ASN ASP VAL ARG ARG LYS LYS ASP SEQRES 4 A 248 ARG ILE ARG GLU ALA GLU TYR GLU PRO ILE ILE ASP ILE SEQRES 5 A 248 ALA ASP GLN TYR MET VAL THR GLU ASP PRO PHE ARG GLY SEQRES 6 A 248 PRO GLY LYS ASN VAL ARG ILE THR LEU PHE LYS GLU ILE SEQRES 7 A 248 ARG ARG VAL HIS PRO ASP THR MET LYS LEU VAL CYS ASN SEQRES 8 A 248 TRP SER GLY LYS GLU PHE LEU ARG GLU THR TRP THR ARG SEQRES 9 A 248 PHE ILE SER GLU GLU PHE PRO ILE THR THR ASP GLN GLU SEQRES 10 A 248 ILE MET ASP LEU TRP PHE GLU LEU GLN LEU ARG PRO MET SEQRES 11 A 248 HIS PRO ASN ARG CYS TYR LYS PHE THR MET GLN TYR ALA SEQRES 12 A 248 LEU GLY ALA HIS PRO ASP TYR VAL ALA HIS ASP VAL ILE SEQRES 13 A 248 ARG GLN GLN ASP PRO TYR TYR VAL GLY PRO ASN ASN ILE SEQRES 14 A 248 GLU ARG ILE ASN LEU SER LYS LYS GLY PHE ALA PHE PRO SEQRES 15 A 248 LEU THR CYS LEU GLN SER VAL TYR ASN ASP ASN PHE GLU SEQRES 16 A 248 ARG PHE PHE ASP ASP VAL LEU TRP PRO TYR PHE TYR ARG SEQRES 17 A 248 PRO LEU VAL TYR VAL GLY THR THR SER ALA GLU ILE GLU SEQRES 18 A 248 GLU ILE MET ILE GLU VAL SER LEU LEU PHE LYS ILE LYS SEQRES 19 A 248 GLU PHE ALA PRO ASP VAL PRO LEU PHE THR GLY PRO ALA SEQRES 20 A 248 TYR FORMUL 2 HOH *97(H2 O) HELIX 1 1 SER A 26 ASP A 54 1 29 HELIX 2 2 SER A 93 PHE A 110 1 18 HELIX 3 3 ASN A 193 VAL A 201 1 9 SHEET 1 AA 2 SER A 16 ILE A 19 0 SHEET 2 AA 2 HIS A 22 LYS A 25 -1 O HIS A 22 N ILE A 19 SHEET 1 AB 4 LYS A 68 VAL A 81 0 SHEET 2 AB 4 GLU A 221 PHE A 236 -1 O GLU A 221 N VAL A 81 SHEET 3 AB 4 ASP A 115 PRO A 129 -1 O ASP A 115 N PHE A 236 SHEET 4 AB 4 ILE A 169 LEU A 174 -1 O GLU A 170 N LEU A 125 SHEET 1 AC 5 VAL A 155 ARG A 157 0 SHEET 2 AC 5 THR A 85 LEU A 88 -1 O MET A 86 N ILE A 156 SHEET 3 AC 5 TYR A 207 THR A 215 -1 O VAL A 213 N LYS A 87 SHEET 4 AC 5 PHE A 138 GLY A 145 -1 O THR A 139 N GLY A 214 SHEET 5 AC 5 TYR A 162 TYR A 163 -1 O TYR A 162 N MET A 140 SSBOND 1 CYS A 135 CYS A 135 1555 2555 2.03 CISPEP 1 PHE A 110 PRO A 111 0 1.82 CISPEP 2 GLY A 245 PRO A 246 0 -8.22 CRYST1 103.400 103.400 103.400 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009671 0.00000