HEADER TRANSFERASE 23-MAR-16 5G15 TITLE STRUCTURE AURORA A (122-403) BOUND TO ACTIVATING MONOBODY MB1 AND TITLE 2 AMPPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA A KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 122-403; COMPND 5 SYNONYM: AURORA 2, AURORA/IPL1-RELATED KINASE 1, ARK-1, AURORA- COMPND 6 RELATED KINASE 1, HARK1, BREAST TUMOR-AMPLIFIED KINASE, SERINE/THREO COMPND 7 -PROTEIN KINASE 15, SERINE/THREONINE-PROTEIN KINASE 6, SERINE/ COMPND 8 THREONINE-PROTEIN KINASE AURORA-A, AURORA A KINASE; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: MB1 MONOBODY; COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE, AURORA A, MONOBODY, AMPPCP, KINASE, ACTIVATION, KEYWDS 2 ALLOSTERY, CELL CYCLE, CANCER EXPDTA X-RAY DIFFRACTION AUTHOR A.ZORBA,S.KUTTER,D.KERN,S.KOIDE,A.KOIDE REVDAT 4 10-JAN-24 5G15 1 REMARK LINK REVDAT 3 24-JUL-19 5G15 1 AUTHOR JRNL REVDAT 2 08-MAY-19 5G15 1 REMARK REVDAT 1 14-MAR-18 5G15 0 JRNL AUTH A.ZORBA,V.NGUYEN,A.KOIDE,M.HOEMBERGER,Y.ZHENG,S.KUTTER, JRNL AUTH 2 C.KIM,S.KOIDE,D.KERN JRNL TITL ALLOSTERIC MODULATION OF A HUMAN PROTEIN KINASE WITH JRNL TITL 2 MONOBODIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 13937 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31239342 JRNL DOI 10.1073/PNAS.1906024116 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2170 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.4250 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2873 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3019 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2809 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4113 ; 1.916 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6472 ; 1.046 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 7.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;35.402 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;16.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3337 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 717 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 2.914 ; 3.189 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1417 ; 2.895 ; 3.187 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1771 ; 4.450 ; 4.764 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1600 ; 3.536 ; 3.600 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5G15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99992 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30879 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 58.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 4C3R AND 3K2M REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AURORA A AND MONOBODIES WERE ALIQUOTED REMARK 280 IN STORAGE BUFFER (20MM TRISHCL, 200MM NACL, 10% (V/V) GLYCEROL, REMARK 280 20MM MGCL2, 5MM TCEP, PH 7.50) AND KEPT AT -80C. AMPPCP WAS REMARK 280 PREPARED FRESH FROM POWDER THE DAY OF CRYSTALLIZATION IN REMARK 280 CONCENTRATIONS OF 100-120MM IN STORAGE BUFFER. CRYSTALS OF AURA REMARK 280 IN COMPLEX WITH AMPPCP AND ACTIVATING MONOBODY, MB1, WERE REMARK 280 OBTAINED BY COMBINING 0.5UL OF [300UM AURA WITH 5MM AMPPCP AND REMARK 280 300UM MB1] WITH 0.5UL OF MOTHER LIQUOR (0.1M MES SODIUM SALT PH REMARK 280 6.50, 0.2M AMMONIUM SULFATE, 4% (V/V) 1,3-PROPANEDIOL, 30% (W/V) REMARK 280 PEG8000). CRYSTALS WERE GROWN AT 18C BY VAPOR DIFFUSION AND THE REMARK 280 SITTING DROP METHOD. THE CRYSTALS WERE WASHED WITH MOTHER LIQUOR REMARK 280 AND FLASH FROZEN IN LIQUID NITROGEN IN PREPARATION FOR DATA REMARK 280 COLLECTION., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.66950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.68050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.85750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.66950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.68050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.85750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.66950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.68050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.85750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.66950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.68050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.85750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2110 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 CYS A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 VAL B 6 REMARK 465 PRO B 7 REMARK 465 THR B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2070 O HOH A 2075 2.10 REMARK 500 O HOH A 2032 O HOH A 2132 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 376 OE2 GLU A 376 2555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 202 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 229 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 226 -40.98 58.79 REMARK 500 ASP A 256 42.03 -151.43 REMARK 500 LEU A 364 52.72 -95.10 REMARK 500 MET B 31 127.97 -33.41 REMARK 500 THR B 45 120.06 -33.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 47 ASN B 48 -144.70 REMARK 500 ASN B 48 SER B 49 147.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2072 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1392 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 274 OD1 REMARK 620 2 ACP A1391 O3G 90.3 REMARK 620 3 HOH A2019 O 137.8 111.2 REMARK 620 4 HOH A2026 O 101.8 106.1 106.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1097 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G16 RELATED DB: PDB REMARK 900 STRUCTURE AURORA A (122-403) BOUND TO INHIBITORY MONOBODY MB2 AND REMARK 900 AMPPCP DBREF 5G15 A 122 403 UNP O14965 AURKA_HUMAN 122 403 DBREF 5G15 B 1 96 PDB 5G15 5G15 1 96 SEQRES 1 A 282 GLU SER LYS LYS ARG GLN TRP ALA LEU GLU ASP PHE GLU SEQRES 2 A 282 ILE GLY ARG PRO LEU GLY LYS GLY LYS PHE GLY ASN VAL SEQRES 3 A 282 TYR LEU ALA ARG GLU LYS GLN SER LYS PHE ILE LEU ALA SEQRES 4 A 282 LEU LYS VAL LEU PHE LYS ALA GLN LEU GLU LYS ALA GLY SEQRES 5 A 282 VAL GLU HIS GLN LEU ARG ARG GLU VAL GLU ILE GLN SER SEQRES 6 A 282 HIS LEU ARG HIS PRO ASN ILE LEU ARG LEU TYR GLY TYR SEQRES 7 A 282 PHE HIS ASP ALA THR ARG VAL TYR LEU ILE LEU GLU TYR SEQRES 8 A 282 ALA PRO LEU GLY THR VAL TYR ARG GLU LEU GLN LYS LEU SEQRES 9 A 282 SER LYS PHE ASP GLU GLN ARG THR ALA THR TYR ILE THR SEQRES 10 A 282 GLU LEU ALA ASN ALA LEU SER TYR CYS HIS SER LYS ARG SEQRES 11 A 282 VAL ILE HIS ARG ASP ILE LYS PRO GLU ASN LEU LEU LEU SEQRES 12 A 282 GLY SER ALA GLY GLU LEU LYS ILE ALA ASP PHE GLY TRP SEQRES 13 A 282 SER VAL HIS ALA PRO SER SER ARG ARG THR THR LEU CYS SEQRES 14 A 282 GLY THR LEU ASP TYR LEU PRO PRO GLU MET ILE GLU GLY SEQRES 15 A 282 ARG MET HIS ASP GLU LYS VAL ASP LEU TRP SER LEU GLY SEQRES 16 A 282 VAL LEU CYS TYR GLU PHE LEU VAL GLY LYS PRO PRO PHE SEQRES 17 A 282 GLU ALA ASN THR TYR GLN GLU THR TYR LYS ARG ILE SER SEQRES 18 A 282 ARG VAL GLU PHE THR PHE PRO ASP PHE VAL THR GLU GLY SEQRES 19 A 282 ALA ARG ASP LEU ILE SER ARG LEU LEU LYS HIS ASN PRO SEQRES 20 A 282 SER GLN ARG PRO MET LEU ARG GLU VAL LEU GLU HIS PRO SEQRES 21 A 282 TRP ILE THR ALA ASN SER SER LYS PRO SER ASN CYS GLN SEQRES 22 A 282 ASN LYS GLU SER ALA SER LYS GLN SER SEQRES 1 B 96 GLY SER VAL SER SER VAL PRO THR LYS LEU GLU VAL VAL SEQRES 2 B 96 ALA ALA THR PRO THR SER LEU LEU ILE SER TRP ASP ALA SEQRES 3 B 96 GLN THR TYR GLN MET TYR ASP TYR VAL SER TYR TYR ARG SEQRES 4 B 96 ILE THR TYR GLY GLU THR GLY GLY ASN SER PRO VAL GLN SEQRES 5 B 96 GLU PHE THR VAL PRO GLY TYR TYR SER THR ALA THR ILE SEQRES 6 B 96 SER GLY LEU LYS PRO GLY VAL ASP TYR THR ILE THR VAL SEQRES 7 B 96 TYR ALA GLU GLY TYR TYR SER SER TYR SER PRO ILE SER SEQRES 8 B 96 ILE ASN TYR ARG THR HET ACP A1391 31 HET MG A1392 1 HET SO4 A1393 5 HET SO4 A1394 5 HET SO4 A1395 5 HET SO4 B1097 5 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 ACP C11 H18 N5 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *145(H2 O) HELIX 1 1 ALA A 129 GLU A 131 5 3 HELIX 2 2 LYS A 166 GLY A 173 1 8 HELIX 3 3 VAL A 174 SER A 186 1 13 HELIX 4 4 THR A 217 SER A 226 1 10 HELIX 5 5 ASP A 229 LYS A 250 1 22 HELIX 6 6 LYS A 258 GLU A 260 5 3 HELIX 7 7 ASP A 274 SER A 278 5 5 HELIX 8 8 PRO A 282 SER A 284 5 3 HELIX 9 9 THR A 292 LEU A 296 5 5 HELIX 10 10 PRO A 297 GLU A 302 1 6 HELIX 11 11 GLU A 308 GLY A 325 1 18 HELIX 12 12 THR A 333 ARG A 343 1 11 HELIX 13 13 THR A 353 LEU A 364 1 12 HELIX 14 14 ASN A 367 ARG A 371 5 5 HELIX 15 15 MET A 373 HIS A 380 1 8 HELIX 16 16 HIS A 380 SER A 387 1 8 SHEET 1 AA 5 PHE A 133 LYS A 141 0 SHEET 2 AA 5 GLY A 145 GLU A 152 -1 O VAL A 147 N LEU A 139 SHEET 3 AA 5 PHE A 157 PHE A 165 -1 O PHE A 157 N GLU A 152 SHEET 4 AA 5 ARG A 205 LEU A 210 -1 O VAL A 206 N LEU A 164 SHEET 5 AA 5 LEU A 196 HIS A 201 -1 N TYR A 197 O ILE A 209 SHEET 1 AB 2 VAL A 252 ILE A 253 0 SHEET 2 AB 2 VAL A 279 HIS A 280 -1 O VAL A 279 N ILE A 253 SHEET 1 AC 2 LEU A 262 LEU A 264 0 SHEET 2 AC 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 SHEET 1 BA 3 GLU B 11 ALA B 15 0 SHEET 2 BA 3 LEU B 20 SER B 23 -1 O LEU B 21 N VAL B 13 SHEET 3 BA 3 THR B 62 ILE B 65 -1 O ALA B 63 N ILE B 22 SHEET 1 BB 4 GLN B 52 PRO B 57 0 SHEET 2 BB 4 VAL B 35 GLU B 44 -1 O TYR B 38 N VAL B 56 SHEET 3 BB 4 ASP B 73 GLY B 82 -1 O THR B 75 N GLY B 43 SHEET 4 BB 4 ILE B 90 ARG B 95 -1 O ILE B 90 N VAL B 78 LINK OD1 ASP A 274 MG MG A1392 1555 1555 2.54 LINK O3G ACP A1391 MG MG A1392 1555 1555 2.38 LINK MG MG A1392 O HOH A2019 1555 1555 2.85 LINK MG MG A1392 O HOH A2026 1555 1555 2.66 SITE 1 AC1 13 GLY A 140 LYS A 141 GLY A 142 LYS A 143 SITE 2 AC1 13 VAL A 147 LYS A 162 GLU A 211 ALA A 213 SITE 3 AC1 13 ASP A 274 MG A1392 HOH A2011 HOH A2012 SITE 4 AC1 13 HOH A2132 SITE 1 AC2 6 LYS A 162 GLU A 181 ASP A 274 ACP A1391 SITE 2 AC2 6 HOH A2019 HOH A2026 SITE 1 AC3 7 LYS A 153 PRO A 349 ASP A 350 PHE A 351 SITE 2 AC3 7 HOH A2106 HOH A2133 HOH A2134 SITE 1 AC4 4 ARG A 180 ARG A 255 SER A 284 HOH A2025 SITE 1 AC5 7 HIS A 248 GLU A 308 MET A 373 LEU A 374 SITE 2 AC5 7 HOH A2066 HOH A2095 HOH A2125 SITE 1 AC6 5 TYR B 42 PHE B 54 THR B 64 ILE B 65 SITE 2 AC6 5 SER B 66 CRYST1 75.339 91.361 143.715 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006958 0.00000